|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
1-562 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 931.59 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK05563 1 MMYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHMLERVIVDDQFRKLSEE 320
Cdd:PRK05563 241 TGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELFKELSEK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 321 MQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLCQQFMMQANGTDRLQAIMNRMQQLEKELEQVKKNGVPAGVQQE 400
Cdd:PRK05563 321 LDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQAAASPEYDTELEVLLQRVEQLEQELKQLKAQPVGVAPEQK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 401 vrETRATPKPVRTGSMKIPVGRVNEVLKQAKRQDLEQLKAVWGELLGRLKSYNKVAFAvLLENSEPVAASDDTYVLAFQY 480
Cdd:PRK05563 401 --EKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLELLKNVWGEILESLKAQRKSLRA-LLVNSEPVAASEDTVVLAFEY 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 481 EIHCKMASENREAMDTVEQALFELLSKRLNMIAIPKSEWGKIREDFLQREGGESEESPEKKEDPLIEEAVKLVGQELIEI 560
Cdd:PRK05563 478 EIHFEKAMLDKELNDTIENILSKLLGKSVEIVAVPEDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKELFGEDLVEI 557
|
..
gi 228822350 561 KE 562
Cdd:PRK05563 558 ID 559
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
3-358 |
0e+00 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 553.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGI 82
Cdd:TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 83 TQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKI 162
Cdd:TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 163 PPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Cdd:TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDVNELLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPqlEHMLERV-IVDDQFRKLSEEM 321
Cdd:TIGR02397 241 LVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTP--SNLLAVLeSEQEFLKELALKL 318
|
330 340 350
....*....|....*....|....*....|....*..
gi 228822350 322 QPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC 358
Cdd:TIGR02397 319 SLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
1-359 |
2.71e-175 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 498.56 E-value: 2.71e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQAlyrtwrPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:COG2812 1 MSYQV------PQTFDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPTGEPCGECESCR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDA-ASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEP 159
Cdd:COG2812 75 AIAAGSHPDVIEIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 160 HKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYsdeivttedvla 239
Cdd:COG2812 155 QKLLPTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQAIAF------------ 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 240 vtGSVS-QQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHMLERVIVdDQFRKLS 318
Cdd:COG2812 223 --GLLDrRELLLDLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLLSLLRDLLLLKLGPDAELLVNEDER-ERLQELA 299
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 228822350 319 EEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLCQ 359
Cdd:COG2812 300 RRLSPERLLRAIQILLEARRELERNVNPRLALEMLLLRLAR 340
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
1-562 |
4.13e-144 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 428.01 E-value: 4.13e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK14965 1 MSYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK14965 81 EITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAEL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHMLERVIVD-DQFRKLSE 319
Cdd:PRK14965 241 LGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAElAELRAQAA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 320 EMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--------QQFMmqangtDRLQAIMNRMqQLEKELEQVKKN 391
Cdd:PRK14965 321 AADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMAtlapgapvSELL------DRLEALERGA-PAPPSAAWGAPT 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 392 GVPAGVQQEVRETRATPKPVRTGSMKIPVGR--VNEVLKQAKRQDLEQLKAVWGELLGRLKSY---NKVAFAVLLENSEP 466
Cdd:PRK14965 394 PAAPAAPPPAAAPPVPPAAPARPAAARPAPApaPPAAAAPPARSADPAAAASAGDRWRAFVAFvkgKKPALGASLEQGSP 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 467 VAASDDTYVLAF---QYEIHCKMASENREAMDTVEQALF------ELLSKRLNMIAIPKSEWGKIREDFLQReggESEES 537
Cdd:PRK14965 474 LGVSAGLLEIGFpegSFELSAMQDPDSRAELKALAEQFFgrptrlRITVLAAPPGAAPPSLAEKKAAEREQR---QARLR 550
|
570 580
....*....|....*....|....*
gi 228822350 538 PEKKEDPLIEEAVKLVGQELIEIKE 562
Cdd:PRK14965 551 EEAREHPLVQEALRVFGGEIDEVEE 575
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
1-562 |
8.37e-138 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 412.28 E-value: 8.37e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEH-APVAEPCNECPSC 79
Cdd:PRK14950 1 MTVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTnDPKGRPCGTCEMC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 80 LGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEP 159
Cdd:PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 160 HKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLA 239
Cdd:PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 240 VTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRD-MLLYQTSpqlehmlERVIVD------D 312
Cdd:PRK14950 241 LLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQvMLLNSGA-------DRSLLDltadekA 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 313 QFRKLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ-------LCQQFMMQANGTDRLQ-----------AI 374
Cdd:PRK14950 314 ALQKVSQIANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEallvpvpAPQPAKPTAAAPSPVRptpapstrpkaAA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 375 MNRMQQLEKELEQVKKNGVPAG-VQQEVRETRATPKPVRTGSMKIPVGRVNEVLKQAKRQD---------LEQLKAVWGE 444
Cdd:PRK14950 394 AANIPPKEPVRETATPPPVPPRpVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEkaliadgdvLEQLEAIWKQ 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 445 LLGRLKSYNKVAFAVLLENSEPVAASDDTYVLAFQYEIHCKMASEnreamDTVEQALFELLSKRLN-MIAIPKSEwgkir 523
Cdd:PRK14950 474 ILRDVPPRSPAVQALLSSGVRPVSVEKNTLTLSFKSKFHKDKIEE-----PENRKITEELLSNFVGkTCAVRCTI----- 543
|
570 580 590
....*....|....*....|....*....|....*....
gi 228822350 524 EDFLQREGGESEESPEKKEDPLIEEAVKLVGQELIEIKE 562
Cdd:PRK14950 544 EEKSEEPGDLREQIREARKDHLVKAAQNIFDAQIISVEE 582
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
2-357 |
4.56e-127 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 379.89 E-value: 4.56e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 2 SYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEH-APVAEPCNECPSCL 80
Cdd:PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNpTEDQEPCNQCASCK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK06305 163 KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKA 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLEhmlervivddqfrKLSEE 320
Cdd:PRK06305 243 LGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLS-------------SVATK 309
|
330 340 350
....*....|....*....|....*....|....*..
gi 228822350 321 MQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQL 357
Cdd:PRK06305 310 YSSEQLLEIIDFLGESAKHIQLTIFEKTFLETVIIHL 346
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
1-449 |
1.31e-126 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 384.31 E-value: 1.31e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINC--EHAPVAEPCNECPS 78
Cdd:PRK14948 1 MAYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNClnSDKPTPEPCGKCEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 79 CLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTE 158
Cdd:PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 159 PHKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQaISYSDEIVTTEDVL 238
Cdd:PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQ-LSLLPGPITPEAVW 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 239 AVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQlehMLERVIVDDQFR--- 315
Cdd:PRK14948 240 DLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPN---RPDLVAVSQQTWdel 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 316 -KLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLCQQFMMQANGTD----RLQAIMNRMQQLEKELEQVKK 390
Cdd:PRK14948 317 cKLAKQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPSAFISEIANAsapaNPTPAPNPSPPPAPIQPSAPK 396
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 228822350 391 NGVPAGVQQEVRETRATPKPVRTGSMKIPvgrVNEVLKQAKRQDLEQLKAVWGELLGRL 449
Cdd:PRK14948 397 TKQAATTPSPPPAKASPPIPVPAEPTEPS---PTPPANAANAPPSLNLEELWQQILAKL 452
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
1-358 |
1.91e-124 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 382.24 E-value: 1.91e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPV-AEPCNECPSC 79
Cdd:PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDlLEPCQECIEN 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 80 LgitQGSIsDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEP 159
Cdd:PRK07133 83 V---NNSL-DIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 160 HKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLA 239
Cdd:PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 240 VTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQ---TSPQLEHM----LERVIVDD 312
Cdd:PRK07133 239 LFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNktkDNSLLEYYseedLEKLKIDD 318
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 228822350 313 QFRklseemqpeviYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC 358
Cdd:PRK07133 319 DFA-----------YKFIEILFDLLKDLKISDNPNDTLEILIIKLL 353
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
1-512 |
3.65e-120 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 364.84 E-value: 3.65e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK14969 1 MSYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGkdpVRF---MEDFIYYYRDMLLYQTSPQL--EHMLERvivdDQFR 315
Cdd:PRK14969 241 LGAIDQDYLFALLEALLAQDGAALLAIADAMEERS---LSFdaaLQDLAALLHRLAIAQTVPDSiaDDLPER----DRLL 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 316 KLSEEMQPEVI---YEI-IHtlskGQQEMKWTnhPRIFLEVVMVQLcqqfmmqangtdRLQAIMNRmqqlekelEQVKKN 391
Cdd:PRK14969 314 DLAKRLSPEDIqlyYQIaLH----GRRDLGLA--PDEYAGFTMTLL------------RMLAFRPS--------EQDSGA 367
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 392 GVPAGVQQEVRETRATPKPVRTGSmkipvgrvnevlKQAKRQDLEQLKAVWGELLGRLKsYNKVAFAvLLENSEPVAASD 471
Cdd:PRK14969 368 GRAPGAVPGVNRTRAVPTAAPAAP------------AAATPSDRQSFNGNWRALVDQLK-LSGLARE-LAQNCELKSFSE 433
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 228822350 472 DTYVLAFQyEIHCKMASENREamDTVEQALFELLSKRLNMI 512
Cdd:PRK14969 434 DRIELRVP-EAHKHLLDKPYQ--DKLQAALEQHFGRPVQLI 471
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
1-354 |
3.77e-120 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 368.42 E-value: 3.77e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK07994 1 MSYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKdpvrfmeDFIYYYRDML-------LYQTSPQ--LEHMLERvivD 311
Cdd:PRK07994 241 LGTLDDDQALSLLEALVEGDGERVMALINQLAERGP-------DWEGLLVELLellhriaMAQLLPAalDNDMADI---E 310
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 228822350 312 DQFRKLSEEMQPEVI---YEIihtLSKGQQEMKWTNHPRIFLEVVM 354
Cdd:PRK07994 311 LRLRELARTLPPEDVqlyYQT---LLIGRKDLPLAPDRRMGVEMTL 353
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
1-349 |
5.88e-120 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 362.99 E-value: 5.88e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK14953 1 MMYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTspqLEHMLERVIVDDQFRKLSEE 320
Cdd:PRK14953 241 LGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKS---LKNPEEVFQVEDFYRKLEKP 317
|
330 340
....*....|....*....|....*....
gi 228822350 321 MqpEVIYEIIHTLSKGQQEMKWTNHPRIF 349
Cdd:PRK14953 318 L--EALLYLEDVINKAFSEARTRDPLRAY 344
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
4-312 |
6.12e-117 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 354.46 E-value: 6.12e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGIT 83
Cdd:PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 84 QGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIP 163
Cdd:PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 164 PTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTGS 243
Cdd:PRK14962 162 PTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGL 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 228822350 244 VSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPvrfmedfiyyyrDMLLYQTSPQLEHMLERVIVDD 312
Cdd:PRK14962 242 IPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDY------------EVLIQQAIEDLVEDLERERAND 298
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
8-424 |
6.87e-116 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 356.78 E-value: 6.87e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINC-EHAPVAEPCNECPSCLGITQGS 86
Cdd:PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCqNLTADGEACNECESCVAFNEQR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 87 ISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTI 166
Cdd:PRK14971 89 SYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTI 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 167 ISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTGSVSQ 246
Cdd:PRK14971 169 LSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDY 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 247 QYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQtSPQLEHMLE-RVIVDDQFRKLSEEMQPEV 325
Cdd:PRK14971 249 DYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCK-DAATLQLLEvGESIRQRYLEQAQKCPMSF 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 326 IYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLCQ--QFMMQANGTDRLQAIMNRM--QQLEKELEQVKKNGVPAGVQQEV 401
Cdd:PRK14971 328 LYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQltQKGDDASGGRGPKQHIKPVftQPAAAPQPSAAAAASPSPSQSSA 407
|
410 420
....*....|....*....|...
gi 228822350 402 RETRATPKPVRTGSMKIPVGRVN 424
Cdd:PRK14971 408 AAQPSAPQSATQPAGTPPTVSVD 430
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
1-275 |
4.84e-112 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 349.39 E-value: 4.84e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK08691 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQM 240
|
250 260 270
....*....|....*....|....*....|....*
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKG 275
Cdd:PRK08691 241 IGAVDKQYLYELLTGIINQDGAALLAKAQEMAACA 275
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
1-426 |
1.35e-109 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 338.67 E-value: 1.35e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK06647 1 MSYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK06647 81 SIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHMLErvIVDDQFRKLSEE 320
Cdd:PRK06647 241 MGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIG--IKAERLPEKLRE 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 321 MQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLCqqfmmqangtdRL------QAIMNRMQQLEKELEQVKKNGV- 393
Cdd:PRK06647 319 FDLSQIERAISVLLETYRDLQFSVNPRYELEINFSKIL-----------RLkdyvpnHELIKQIQDLESKLLEHAAPDSc 387
|
410 420 430
....*....|....*....|....*....|....*
gi 228822350 394 --PAGVQQEVRETRAtPKPVRTgSMKIPVGRVNEV 426
Cdd:PRK06647 388 nfDVGSDNESTDDLS-PIPIDP-PLKAELPEIRSL 420
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
4-505 |
5.64e-109 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 337.62 E-value: 5.64e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGIT 83
Cdd:PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 84 Q---GSIsDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK14952 81 PngpGSI-DVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS-DEIVTTEDVLA 239
Cdd:PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAaDTHVTYQRALG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 240 VTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQlehMLERVIVD------DQ 313
Cdd:PRK14952 240 LLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPD---AAARGVVDapedvlER 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 314 FRKLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLcqqfmMQANGTDRLQAIMNRMQQLEKELEQvkknGV 393
Cdd:PRK14952 317 MREQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL-----LLPSASDAESALLQRVERIETRLDM----SI 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 394 PAGVQQEVRETRATPKPVRTGSMKIPVGRVNEVLKQAKRQDLEQLKAV---WGELLGRLKSYNKVAfAVLLENSEPVAAS 470
Cdd:PRK14952 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAAVrsmWSTVRDKVRQRSRTT-EVMLAGATVRALE 466
|
490 500 510
....*....|....*....|....*....|....*
gi 228822350 471 DDTYVLAFQYEIHCKMASENREAmDTVEQALFELL 505
Cdd:PRK14952 467 GNTLVLTHESAPLARRLSEQRNA-DVLAEALKDAL 500
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
1-296 |
1.49e-108 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 337.20 E-value: 1.49e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK05896 1 MSEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKT 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQ 296
Cdd:PRK05896 241 FGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQ 296
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1-275 |
2.55e-108 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 339.54 E-value: 2.55e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAP-----VAEPCNE 75
Cdd:PRK12323 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADgeggiTAQPCGQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 76 CPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILA 155
Cdd:PRK12323 81 CRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 156 TTEPHKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTE 235
Cdd:PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEE 240
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 228822350 236 DVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKG 275
Cdd:PRK12323 241 AVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRS 280
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
1-357 |
7.29e-106 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 330.75 E-value: 7.29e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHA--------PVAEP 72
Cdd:PRK14954 1 MSYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMiddpvylqEVTEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 73 CNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIF 152
Cdd:PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 153 ILATTEPHKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS---- 228
Cdd:PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSvgse 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 229 -DEIVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQtSPQLEHMLER 307
Cdd:PRK14954 241 aEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLY-NLRSTRLIER 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 228822350 308 V-IVDDQFRKLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQL 357
Cdd:PRK14954 320 PeSVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRL 370
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
3-284 |
9.12e-106 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 329.94 E-value: 9.12e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHA-----PVAEPCNECP 77
Cdd:PRK09111 11 YRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPdgdggPTIDLCGVGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 78 SCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATT 157
Cdd:PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 158 EPHKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDV 237
Cdd:PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAV 250
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 228822350 238 LAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMED 284
Cdd:PRK09111 251 RDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTD 297
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
1-357 |
1.51e-104 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 320.30 E-value: 1.51e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEH--------APVAEP 72
Cdd:PRK14955 1 MSYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRmiddadylQEVTEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 73 CNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIF 152
Cdd:PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 153 ILATTEPHKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDE-- 230
Cdd:PRK14955 161 IFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVEse 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 231 ---IVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQtSPQLEHMLER 307
Cdd:PRK14955 241 gegSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVH-NLRSTRLVER 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 228822350 308 V-IVDDQFRKLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQL 357
Cdd:PRK14955 320 PdAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKL 370
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
2-400 |
1.45e-102 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 318.04 E-value: 1.45e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 2 SYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLG 81
Cdd:PRK14956 4 THEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 82 ITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHK 161
Cdd:PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 162 IPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVT 241
Cdd:PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMI 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 242 GSVSQQYLGNLV-ECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYY------YRDMLLYQTSPQLEHMlERVIVDDQF 314
Cdd:PRK14956 244 GYHGIEFLTSFIkSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFthtlnlIRDSLADRESVNFPKE-DLQKMKSDF 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 315 RKLSEEMQPEV------IYEIIHTLS-KGQQEMKwtnhprIFLEVVMVQLCQQFMMQ--ANGTDRLQAIMNRMQ---QLE 382
Cdd:PRK14956 323 ENVDSSKLNFLsgklfeIYEKIKTIRlRNSFEIK------VFTEIQIKKLVEELTYPslAGLLDKINHLILMVQgskNIP 396
|
410
....*....|....*...
gi 228822350 383 KELEQVKKNGVPAGVQQE 400
Cdd:PRK14956 397 EDVEPVKKISTPPPLQQE 414
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
1-266 |
1.64e-102 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 318.32 E-value: 1.64e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSyqALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEhAPVAEPCNECPSCL 80
Cdd:PRK14963 1 MS--ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS-GEDPKPCGECESCL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK14963 78 AVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISySDEIVTTEDVLAV 240
Cdd:PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLA-LGTPVTRKQVEEA 236
|
250 260
....*....|....*....|....*.
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQ 266
Cdd:PRK14963 237 LGLPPQERLRGIAAALAQGDAAEALS 262
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
5-410 |
7.05e-101 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 323.48 E-value: 7.05e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 5 ALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGITQ 84
Cdd:PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 85 ---GSIsDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHK 161
Cdd:PRK07764 84 ggpGSL-DVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 162 IPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS-DEIVTTEDVLAV 240
Cdd:PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAgPEGVTYERAVAL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQlehMLERVIVD---DQFRKL 317
Cdd:PRK07764 243 LGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPD---AAERGLVDapaDQLDRM 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 318 SEEMQ----PEVIY--EIIHTlskGQQEMKWTNHPRIFLEVvmvqLCQQFMMQANGTDRLqAIMNRMQQLEKELEQVKKN 391
Cdd:PRK07764 320 RAQAQrlgpAELTRaaDVVND---GLTEMRGATSPRLLLEL----LCARMLLPSASDDER-GLLARLERLERRLGVAGGA 391
|
410
....*....|....*....
gi 228822350 392 GVPAGVQQEVRETRATPKP 410
Cdd:PRK07764 392 GAPAAAAPSAAAAAPAAAP 410
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
1-278 |
2.32e-100 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 324.76 E-value: 2.32e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK14949 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTM 240
|
250 260 270
....*....|....*....|....*....|....*...
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDP 278
Cdd:PRK14949 241 LGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADA 278
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
4-272 |
8.00e-100 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 312.35 E-value: 8.00e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGIT 83
Cdd:PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 84 QGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIP 163
Cdd:PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 164 PTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTGS 243
Cdd:PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGL 241
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 228822350 244 VSQQYLGNLVECIRENDVSRALQ------------IIDEMM 272
Cdd:PRK08451 242 LDPSKLEDFFQAILNQDKEKLFEllkeledyeaemVLDEMM 282
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
1-356 |
8.13e-99 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 304.04 E-value: 8.13e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK14961 1 MNYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHMLERVIVDDQFRKLSEE 320
Cdd:PRK14961 241 LGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQIQKIAQN 320
|
330 340 350
....*....|....*....|....*....|....*.
gi 228822350 321 MQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Cdd:PRK14961 321 NKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLR 356
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1-300 |
2.49e-98 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 311.26 E-value: 2.49e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAP-----VAEPCNE 75
Cdd:PRK14951 1 MSYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDgqggiTATPCGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 76 CPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILA 155
Cdd:PRK14951 81 CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 156 TTEPHKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTE 235
Cdd:PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEA 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 228822350 236 DVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQ 300
Cdd:PRK14951 241 AVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQ 305
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
8-357 |
1.42e-97 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 301.02 E-value: 1.42e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 8 RTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCehapvaepcnecPSCLGITQGSI 87
Cdd:PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ------------PGYDDPNEDFS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 88 SDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTII 167
Cdd:PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 168 SRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTGSVSQQ 247
Cdd:PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYD 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 248 YLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTsPQLEHMLErviVDDQFRKL-SEEMQPEVI 326
Cdd:PRK14970 237 TYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKT-PATIALLE---VGEQAKKRyEVQSQKVSQ 312
|
330 340 350
....*....|....*....|....*....|....
gi 228822350 327 YEIIHTLSKGQQ---EMKWTNHPRIFLEVVMVQL 357
Cdd:PRK14970 313 SFLLSGIDIANDcdlKYKLSKNQRLLVELALMQL 346
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1-271 |
3.79e-97 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 313.71 E-value: 3.79e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK07003 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGM 240
|
250 260 270
....*....|....*....|....*....|.
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEM 271
Cdd:PRK07003 241 LGALDQTYMVRLLDALAAGDGPEILAVADEM 271
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
10-358 |
8.64e-97 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 303.24 E-value: 8.64e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 10 WRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGITQGSISD 89
Cdd:PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 90 VLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISR 169
Cdd:PRK14964 87 VIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 170 CQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTGSVSQQYL 249
Cdd:PRK14964 167 CQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVDKHIL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 250 GNLVECIRENDVSRALQIIDEMMSKGkDPVRFMEDFIYYYRDMLLYQTSPQLEHMLERVIVDDQfrKLSEEMQPEVIYEI 329
Cdd:PRK14964 247 EDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRI--KSLKIGSTIFLSRL 323
|
330 340
....*....|....*....|....*....
gi 228822350 330 IHTLSKGQQEMKWTNHPRIFLEVVMVQLC 358
Cdd:PRK14964 324 WQMLLKGIQEVKSSTCVKQAAEMMIIRLC 352
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
1-357 |
2.77e-94 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 300.83 E-value: 2.77e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK14959 1 MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK14959 81 KVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTS-----PQLEHMLERVivdDQFR 315
Cdd:PRK14959 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAgeaalASLDLPEDEA---RQWL 317
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 228822350 316 KLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQL 357
Cdd:PRK14959 318 GWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNL 359
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
1-476 |
3.79e-89 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 285.05 E-value: 3.79e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK14957 1 MSYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK14957 81 AINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHM--LERVIVDDQFRKLS 318
Cdd:PRK14957 241 LGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVndIDVDIINNILAKIS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 319 EEmQPEVIYEIIHTLSKgqqemKWTNHPRIFLEVVMVQLcqqfmmqangtdRLQAIMNRmqQLEKELEQVKKNGVPAGVQ 398
Cdd:PRK14957 321 IE-QAHFLYQLTITAKK-----DIALAPNFETGVTMAIL------------RLIAFQKK--NLIDKTQTSKSNISPIVSK 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 399 QEVRETRATPKPVRTGSMKIPVGRVNEVLKQAKRQDLEQLKAVWGELLGR--LKSYNK-VAFavlleNSEPVAASDDTYV 475
Cdd:PRK14957 381 NDINLLKNTFKSEQPKQTVKAVVAQNNDSTASENTQEQSLDKKWFNLLNRikLKGFTKtLAF-----NSHLISDNSETFV 455
|
.
gi 228822350 476 L 476
Cdd:PRK14957 456 I 456
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
3-467 |
3.65e-86 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 281.55 E-value: 3.65e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGI 82
Cdd:PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 83 TQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKI 162
Cdd:PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 163 PPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Cdd:PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQL-----EHMLERVIvddQFRKL 317
Cdd:PRK14960 242 LIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELglkysEEINAKIL---QLSKL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 318 SEEMQPEVIYEIIhtlSKGQQEMKWTNHPRIFLEVVMVQLC-------QQFMMQANGTDRLQAIMNRMQQLEKELEQVKK 390
Cdd:PRK14960 319 ISAQDLQLYYQIA---CKGRSDLQLAVTQEQGFEMCVLRLLafrplapNEILVSEPVQQNGQAEVGLNSQAQTAQEITPV 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 391 NGV--------PAGVQQEVR-ETRATPKPVRTGSMKiPVGRVNEVLKQAKRQDLEQLKAVWGELLGRLKSYNKVAFAVLL 461
Cdd:PRK14960 396 SAVqpvevisqPAMVEPEPEpEPEPEPEPEPEPEPE-PEPEPEPEPEPQPNQDLMVFDPNHHELIGLESAVVQETVSVLE 474
|
....*.
gi 228822350 462 ENSEPV 467
Cdd:PRK14960 475 EDFIPV 480
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
1-367 |
3.82e-83 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 268.52 E-value: 3.82e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 1 MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCL 80
Cdd:PRK14958 1 MAHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 81 GITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPH 160
Cdd:PRK14958 81 EIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAV 240
Cdd:PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 241 TGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPqlEHMLERviVDDQFRKLSEE 320
Cdd:PRK14958 241 LGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVP--EALIEN--DSEQLRQLAKL 316
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 228822350 321 MQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLCQQFMMQANG 367
Cdd:PRK14958 317 LDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAFYPSAANA 363
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
3-356 |
1.32e-82 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 266.72 E-value: 1.32e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEhAPVAE-----PCNECP 77
Cdd:PRK06645 8 YIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS-ALITEnttikTCEQCT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 78 SCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATT 157
Cdd:PRK06645 87 NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 158 EPHKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS---DEIVTT 234
Cdd:PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSaksDNIISP 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 235 EDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFME---DFIYYYR--DMLLYQTSPQLEHMlervi 309
Cdd:PRK06645 247 QVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIEsvsDFIAYLNkvKMLPNYSLPIYESF----- 321
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 228822350 310 vDDQFRKLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Cdd:PRK06645 322 -NDRTKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIK 367
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
21-307 |
2.23e-59 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 199.05 E-value: 2.23e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 21 QKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLgITQGSISDVLEIDAASNN- 99
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQCHSRL-MAAGNHPDLLELNPEEKSd 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 100 --GVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRK 177
Cdd:COG0470 80 qiGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 178 ISVNDIVERLSTvvtnEGtqVEDEALQIVARAAEGGMRDALSLIdQAISYSDEIVttEDVLAVTGSVSQQYLgnLVECIR 257
Cdd:COG0470 160 PSEEEALAWLRE----EG--VDEDALEAILRLAGGDPRAAINLL-QALAGRKELL--EDLAALLSRDRALEL--LDALLK 228
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 228822350 258 ENDVSR----ALQIIDEMMSKGKDPVRF-MEDFIYYYRDMLLYQTSP--QLEHMLER 307
Cdd:COG0470 229 AEALELldwlLKWLLDNLPLEYAGEDLArAYEALSEADRRLGRYANDrlLLEALLAK 285
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
26-212 |
3.73e-58 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 192.07 E-value: 3.73e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 26 KTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNN-GVDEI 104
Cdd:TIGR00678 2 QQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSiKVDQV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 105 RDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIV 184
Cdd:TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEALL 161
|
170 180
....*....|....*....|....*...
gi 228822350 185 ERLstvvtnEGTQVEDEALQIVARAAEG 212
Cdd:TIGR00678 162 QWL------IRQGISEEAAELLLALAGG 183
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
20-179 |
6.49e-55 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 182.80 E-value: 6.49e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 20 GQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNN 99
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRSCRRIESGNHPDLVIIEPEGQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 100 -GVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKI 178
Cdd:pfam13177 81 iKIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKPL 160
|
.
gi 228822350 179 S 179
Cdd:pfam13177 161 S 161
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
21-323 |
1.08e-38 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 144.68 E-value: 1.08e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 21 QKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGITQGSISDVLEI--DAASN 98
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVapDGQSI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 99 NgVDEIRDIrdKVKYAPSAVE--YKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFR 176
Cdd:PRK08058 91 K-KDQIRYL--KEEFSKSGVEsnKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFR 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 177 KISVNDIVERLstvvTNEGTQvedEALQIVARAAEGGMRDALSLIDqaisySDEIVTtedvlavtgsvSQQYLGNLVECI 256
Cdd:PRK08058 168 PLPPESLIQRL----QEEGIS---ESLATLLAGLTNSVEEALALSE-----DDWFAQ-----------ARALVIKLYEAL 224
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 257 RENDVSRALQIIDEMMS--KGKDPVRFMEDFI-YYYRDMLLYQTSPQlehmlERVIVDDQFRKLSEEMQP 323
Cdd:PRK08058 225 HEKDLQSFVFVQEKWMPlfKEKDQQQLGLDLLlLIYRDLLYLQLGEE-----DRLVFREQKEMLQQLALS 289
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
15-212 |
4.42e-34 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 133.50 E-value: 4.42e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 15 FEDVVGQKHVTKTLQNA---------LLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHaPVAEPCNECPSCLGITQG 85
Cdd:PRK07940 4 WDDLVGQEAVVAELRAAaraaradvaAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTD-PDEPGCGECRACRTVLAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 86 SISDVLEIDA-ASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPP 164
Cdd:PRK07940 83 THPDVRVVAPeGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLP 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 228822350 165 TIISRCQRFEFRKISVNDIVERLstvVTNEGtqVEDEALQIVARAAEG 212
Cdd:PRK07940 163 TIRSRCRHVALRTPSVEAVAEVL---VRRDG--VDPETARRAARASQG 205
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
10-315 |
5.86e-34 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 131.15 E-value: 5.86e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 10 WRPQKFEDVVGQKHVTKTLQNALLQEKVSHaYLFSGPRGTGKTTIAKVFAKAIncehapVAEPCNEcpsclgitqgsisD 89
Cdd:PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALAREL------YGEDWRE-------------N 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 90 VLEIDAASNNGVDEIRD-IRDKVKYAPSA-VEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTII 167
Cdd:PRK00440 71 FLELNASDERGIDVIRNkIKEFARTAPVGgAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 168 SRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIdQAISYSDEIVTTEDVLAVTGSVSQQ 247
Cdd:PRK00440 151 SRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKEVTEEAVYKITGTARPE 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 228822350 248 YLGNLVECIRENDVSRALQIIDEMMSK----GKDPVRFMedfiyyYRDMLLYQTSPQLEHMLERVIVDDQFR 315
Cdd:PRK00440 230 EIREMIELALNGDFTEAREKLRDLMIDyglsGEDIIKQI------HREVWSLDIPEELKVELIDAIGEADFR 295
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
11-248 |
8.69e-34 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 132.90 E-value: 8.69e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 11 RPQKFEDVVGQKHVT---KTLQNALLQEKVSHAyLFSGPRGTGKTTIAKVFAKAINCEhapvaepcnecpsclgitqgsi 87
Cdd:PRK13342 7 RPKTLDEVVGQEHLLgpgKPLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGATDAP---------------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 88 sdVLEIDAAsNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHmlsmgAFN-----ALLKTLEEppGHVIFILATTE-P-H 160
Cdd:PRK13342 64 --FEALSAV-TSGVKDLREVIEEARQRRSAGRRTILFIDEIH-----RFNkaqqdALLPHVED--GTITLIGATTEnPsF 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEG---TQVEDEALQIVARAAEGGMRDALSLIDQAiSYSDEIVTTEDV 237
Cdd:PRK13342 134 EVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKErglVELDDEALDALARLANGDARRALNLLELA-ALGVDSITLELL 212
|
250
....*....|.
gi 228822350 238 LAVTGSVSQQY 248
Cdd:PRK13342 213 EEALQKRAARY 223
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
9-272 |
1.10e-30 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 122.41 E-value: 1.10e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 9 TWRPQKFEDVVGQKHVTKTLQnALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPvaepcnecpsclgitqgsiS 88
Cdd:PRK12402 8 KYRPALLEDILGQDEVVERLS-RAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWE-------------------N 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 89 DVLEIDAAS--NNGVDEIRD-----------------IRDKVK--------YAPSAVEYKVYIIDEVHMLSMGAFNALLK 141
Cdd:PRK12402 68 NFTEFNVADffDQGKKYLVEdprfahflgtdkrirssKIDNFKhvlkeyasYRPLSADYKTILLDNAEALREDAQQALRR 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 142 TLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLI 221
Cdd:PRK12402 148 IMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTL 227
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 228822350 222 DQAISYSDEIvTTEDVLAVTGSV-SQQYLGNLVECIRENDVSRALQIIDEMM 272
Cdd:PRK12402 228 QTAALAAGEI-TMEAAYEALGDVgTDEVIESLLDAAEAGDFTDARKTLDDLL 278
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
14-183 |
5.38e-29 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 116.92 E-value: 5.38e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 14 KFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHapvaePCNECPSCLgITQGSISDVL-- 91
Cdd:PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG-----SPSKNIRRR-LEEGNHPDLLwv 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 92 ----------------EIDAASNNGVDEIR--DIRD-KVKYAPSAVE--YKVYIIDEVHMLSMGAFNALLKTLEEpPGHV 150
Cdd:PRK07399 76 eptyqhqgklitaseaEEAGLKRKAPPQIRleQIREiKRFLSRPPLEapRKVVVIEDAETMNEAAANALLKTLEE-PGNG 154
|
170 180 190
....*....|....*....|....*....|...
gi 228822350 151 IFILATTEPHKIPPTIISRCQRFEFRKISVNDI 183
Cdd:PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQL 187
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
39-223 |
5.36e-28 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 114.41 E-value: 5.36e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 39 HAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGITQGSISD--VLEIDAASNN-GVDEIRDIRDKVKYAP 115
Cdd:PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDnfVLEPEEADKTiKVDQVRELVSFVVQTA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 116 SAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEG 195
Cdd:PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD 182
|
170 180
....*....|....*....|....*...
gi 228822350 196 tqvEDEALQIVARAAEGGMRdALSLIDQ 223
Cdd:PRK05707 183 ---ERERIELLTLAGGSPLR-ALQLHEQ 206
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
11-242 |
1.57e-25 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 109.38 E-value: 1.57e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 11 RPQKFEDVVGQKHVT---KTLQNALLQEKVsHAYLFSGPRGTGKTTIAKVFAKAINCEHAPvaepcnecpsclgitqgsI 87
Cdd:COG2256 20 RPRTLDEVVGQEHLLgpgKPLRRAIEAGRL-SSMILWGPPGTGKTTLARLIANATDAEFVA------------------L 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 88 SdvleidaASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHmlsmgAFN-----ALLKTLEEppGHVIFILATTE-P-H 160
Cdd:COG2256 81 S-------AVTSGVKDIREVIEEARERRAYGRRTILFVDEIH-----RFNkaqqdALLPHVED--GTITLIGATTEnPsF 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 161 KIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGT-------QVEDEALQIVARAAEGGMRDALSLIDQAISYSDE--- 230
Cdd:COG2256 147 EVNSALLSRCRVFVLKPLSEEDLEQLLERALADDERglggyklELDDEALEALARLADGDARRALNALELAVLSAPPdgv 226
|
250
....*....|...
gi 228822350 231 -IVTTEDVLAVTG 242
Cdd:COG2256 227 iEITLELVEEALQ 239
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
18-238 |
1.88e-25 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 107.82 E-value: 1.88e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 18 VVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI----NCEHAP--VAEPCNECPSCLGITQGSISDVL 91
Cdd:PRK09112 25 LFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIlshpDPAEAPetLADPDPASPVWRQIAQGAHPNLL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 92 EID---------AASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKI 162
Cdd:PRK09112 105 HITrpfdektgkFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRL 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 228822350 163 PPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTqvEDEALQIVARAAEGGMRDALSLidqaISYSD-EIVTTEDVL 238
Cdd:PRK09112 185 LPTIRSRCQPISLKPLDDDELKKALSHLGSSQGS--DGEITEALLQRSKGSVRKALLL----LNYGGlEIIATIDQL 255
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
35-305 |
2.40e-25 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 106.88 E-value: 2.40e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 35 EKVSHAYLFSGPRGTGKTTIAKVFAKAINCEH-APVAEPCNECPSCLGITQGSISDVLEIDAASN---NG-------VDE 103
Cdd:PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETpAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDepeNGrkllqikIDA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 104 IRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFE--------- 174
Cdd:PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVlpapsheea 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 175 ---FRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEG-GMRDALSLIDqaisYSDEIVTTEDVLAVTGSVSQQYLG 250
Cdd:PRK08699 178 layLRERGVAEPEERLAFHSGAPLFDEEPELRALRIKLLDIlAEPRLLKILD----YAALFDKEKLPLAVFVGWMQKWLV 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 228822350 251 NLVECIRENDVSRALQIIDEM--MSKGKDPVRFMEdfiyyYRDMLLyQTSP----------QLEHML 305
Cdd:PRK08699 254 DLGLCLQHMKPVYYPAYEDRLlqTASGFRPRNVFA-----AEDMLK-QLAPygfhtlnvkmQIEHLL 314
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
178-242 |
1.09e-24 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 97.19 E-value: 1.09e-24
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 228822350 178 ISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
33-173 |
2.05e-23 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 101.38 E-value: 2.05e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 33 LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEH-APVAEPCNECPSCLGITQGSISD-------VLEIDAASNNGVDEI 104
Cdd:PRK06964 16 LRARLPHALLLHGQAGIGKLDFAQHLAQGLLCETpQPDGEPCGTCAACNWFAQGNHPDyrivrpeALAAEAPGAADEAKE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 105 RDIRDKVKY--APSaveyKVYIIDEVHMLS--MG----------------------AFNALLKTLEEPPGHVIFILATTE 158
Cdd:PRK06964 96 ADADEGGKKtkAPS----KEIKIEQVRALLdfCGvgthrggarvvvlypaealnvaAANALLKTLEEPPPGTVFLLVSAR 171
|
170
....*....|....*
gi 228822350 159 PHKIPPTIISRCQRF 173
Cdd:PRK06964 172 IDRLLPTILSRCRQF 186
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
31-171 |
6.22e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 96.73 E-value: 6.22e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 31 ALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNN--GVDEIRDIR 108
Cdd:PRK06871 17 AFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKdiGVDQVREIN 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 228822350 109 DKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQ 171
Cdd:PRK06871 97 EKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
10-264 |
9.93e-22 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 96.34 E-value: 9.93e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 10 WRPQKFEDVVGQKHVTKTLQnALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIncehapvaepcnecpscLGITqgSISD 89
Cdd:PLN03025 7 YRPTKLDDIVGNEDAVSRLQ-VIARDGNMPNLILSGPPGTGKTTSILALAHEL-----------------LGPN--YKEA 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 90 VLEIDAASNNGVDEIRD-----IRDKVKYAPSavEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPP 164
Cdd:PLN03025 67 VLELNASDDRGIDVVRNkikmfAQKKVTLPPG--RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 165 TIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIdQAISYSDEIVTTEDVLAVTGSV 244
Cdd:PLN03025 145 PIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNL-QATHSGFGFVNQENVFKVCDQP 223
|
250 260
....*....|....*....|
gi 228822350 245 SQQYLGNLVECIRENDVSRA 264
Cdd:PLN03025 224 HPLHVKNIVRNCLKGKFDDA 243
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
39-223 |
8.50e-21 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 94.33 E-value: 8.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 39 HAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLG----------ITQGSISDVLEIDAASNNG-------- 100
Cdd:PRK07471 42 HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAidpdhpvarrIAAGAHGGLLTLERSWNEKgkrlrtvi 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 101 -VDEIRDIrdKVKYAPSAVE--YKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRK 177
Cdd:PRK07471 122 tVDEVREL--ISFFGLTAAEggWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRP 199
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 228822350 178 ISVNDiverLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQ 223
Cdd:PRK07471 200 LAPED----VIDALAAAGPDLPDDPRAALAALAEGSVGRALRLAGG 241
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
14-354 |
4.98e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 90.86 E-value: 4.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 14 KFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIncehapvaepcnecpscLGITQGSIS-DVLE 92
Cdd:PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKI-----------------LGKSQQREYvDIIE 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 93 IDAASNN--GVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170
Cdd:PRK05564 65 FKPINKKsiGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 171 QRFEFRKISVNDIVERLSTVVTNEGTQvedealqivaraaeggmrdalsLIDQAISYSDEIVTTEDVLAVTGSVS--QQY 248
Cdd:PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDIKEE----------------------EKKSAIAFSDGIPGKVEKFIEDDSLKniRNM 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 249 LGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHMLERVIVDDqFRKLSEEMQPEVIYE 328
Cdd:PRK05564 203 SLEILKDIKKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIED-IKHISEKFSYKKLNK 281
|
330 340
....*....|....*....|....*..
gi 228822350 329 IIHTLSKGQQEM-KWTNHPRIFLEVVM 354
Cdd:PRK05564 282 MIEIINDTRDNLsSNVNPTLVFDSMLI 308
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
21-177 |
2.64e-19 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 88.54 E-value: 2.64e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 21 QKHVTKTLQNALLQEKVSHAYLFSGprGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGITQGSISDVLEIdaASNNG 100
Cdd:PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVI--EPQGQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 101 VDEIRDIRDKVK-YAPSAVEYK--VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRK 177
Cdd:PRK07276 83 VIKTDTIRELVKnFSQSGYEGKqqVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK 162
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
91-241 |
5.41e-18 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 87.97 E-value: 5.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 91 LEIDAASNNGVDEIRD-IRDKVKYAP-SAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIIS 168
Cdd:PRK04132 600 LELNASDERGINVIREkVKEFARTKPiGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 228822350 169 RCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIdQAISYSDEIVTTEDVLAVT 241
Cdd:PRK04132 680 RCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINIL-QAAAALDDKITDENVFLVA 751
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
11-242 |
3.88e-17 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 84.20 E-value: 3.88e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 11 RPQKFEDVVGQKHVTKTLQ---NALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEhapvaepcnecpsclgitqgsi 87
Cdd:PRK04195 9 RPKTLSDVVGNEKAKEQLRewiESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWE---------------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 88 sdVLEIDAASNNGVDEIRdirdkvKYAPSA--------VEYKVYIIDEVHMLS----MGAFNALLKTLEEPPGHVIfiLA 155
Cdd:PRK04195 67 --VIELNASDQRTADVIE------RVAGEAatsgslfgARRKLILLDEVDGIHgnedRGGARAILELIKKAKQPII--LT 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 156 TTEPHKIPP-TIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDAlslID--QAISYSDEIV 232
Cdd:PRK04195 137 ANDPYDPSLrELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSA---INdlQAIAEGYGKL 213
|
250
....*....|
gi 228822350 233 TTEDVLAVTG 242
Cdd:PRK04195 214 TLEDVKTLGR 223
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
28-225 |
1.17e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 81.00 E-value: 1.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 28 LQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPvAEPCNECPSCLGITQGSISDVLEIDAASNNG---VDEI 104
Cdd:PRK06090 15 WKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ-SEACGFCHSCELMQSGNHPDLHVIKPEKEGKsitVEQI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 105 RDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIV 184
Cdd:PRK06090 94 RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAM 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 228822350 185 ERLStvvtNEGTQVEDEALQ------IVARAA--EGGMRDALSLIDQAI 225
Cdd:PRK06090 174 QWLK----GQGITVPAYALKlnmgspLKTLAMmkEGGLEKYHKLERQLV 218
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
5-262 |
3.83e-16 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 79.65 E-value: 3.83e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 5 ALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFakaincehapvaepCNEcpscLGItq 84
Cdd:PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKAL--------------CNE----VGA-- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 85 gsisDVLEIDAASNNgvdeIRDIRDKVKYAPSAVEY----KVYIIDEVHMLSMGAFNALLKTL-EEPPGHVIFILATTEP 159
Cdd:PHA02544 70 ----EVLFVNGSDCR----IDFVRNRLTRFASTVSLtgggKVIIIDEFDRLGLADAQRHLRSFmEAYSKNCSFIITANNK 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 160 HKIPPTIISRCQRFEFR------KISVN-DIVERLSTVVTNEGTQVEDEAL-QIVARAAEggmrDALSLIDQAISYSDEI 231
Cdd:PHA02544 142 NGIIEPLRSRCRVIDFGvptkeeQIEMMkQMIVRCKGILEAEGVEVDMKVLaALVKKNFP----DFRRTINELQRYASTG 217
|
250 260 270
....*....|....*....|....*....|.
gi 228822350 232 VTTEDVLAVTGSVSqqyLGNLVECIRENDVS 262
Cdd:PHA02544 218 KIDAGILSEVTNSD---IDDVVEALKAKDFK 245
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
34-170 |
2.14e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 76.76 E-value: 2.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 34 QEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEpcnecpscLGITQGSISDVLEIDAASNNGVDEI---RDIRDK 110
Cdd:PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAA--------YKISQKIHPDIHEFSPQGKGRLHSIetpRAIKKQ 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 111 VKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170
Cdd:PRK05917 87 IWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS 146
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
19-177 |
2.45e-15 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 73.33 E-value: 2.45e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 19 VGQKHVTKTLQNALLQEKVSHaYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPcnecpsclgitqgSISDVLEIDA-AS 97
Cdd:cd00009 1 VGQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANELFRPGAPFLYL-------------NASDLLEGLVvAE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 98 NNGVDEIRDIRDKVKYApsavEYKVYIIDEVHMLSMGAFNALLKTLEE------PPGHVIFILATT--EPHKIPPTIISR 169
Cdd:cd00009 67 LFGHFLVRLLFELAEKA----KPGVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNrpLLGDLDRALYDR 142
|
....*....
gi 228822350 170 C-QRFEFRK 177
Cdd:cd00009 143 LdIRIVIPL 151
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
10-176 |
5.28e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 76.15 E-value: 5.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 10 WRPQKFEDVVGqkhvtktlqnALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI--NCEHAPVAEPCNECpsclgITQGSI 87
Cdd:PRK08769 8 WQQRAYDQTVA----------ALDAGRLGHGLLICGPEGLGKRAVALALAEHVlaSGPDPAAAQRTRQL-----IAAGTH 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 88 SDVLEIDAASNNGVD---------EIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEP-PGHVIFiLATT 157
Cdd:PRK08769 73 PDLQLVSFIPNRTGDklrteivieQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPsPGRYLW-LISA 151
|
170
....*....|....*....
gi 228822350 158 EPHKIPPTIISRCQRFEFR 176
Cdd:PRK08769 152 QPARLPATIRSRCQRLEFK 170
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
26-188 |
2.95e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 73.60 E-value: 2.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 26 KTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPcNECPSclgitQGSISDVLEIDAASNNGVDEIR 105
Cdd:PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNE-QELPA-----NIILFDIFDKDLSKSEFLSAIN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 106 DIrdkVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIVE 185
Cdd:PRK07132 80 KL---YFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156
|
...
gi 228822350 186 RLS 188
Cdd:PRK07132 157 KLL 159
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
41-175 |
5.99e-14 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 68.77 E-value: 5.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 41 YLFSGPRGTGKTTIAKVFAKAINCEhapvaepcnecpsclgitqgsisdVLEIDAAS--NNGVDE-IRDIRDKVKYApSA 117
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAP------------------------FIEISGSElvSKYVGEsEKRLRELFEAA-KK 55
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 228822350 118 VEYKVYIIDEVHML-----------SMGAFNALLKTLEEP---PGHVIFILATTEPHKIPPTIISRCQRFEF 175
Cdd:pfam00004 56 LAPCVIFIDEIDALagsrgsggdseSRRVVNQLLTELDGFtssNSKVIVIAATNRPDKLDPALLGRFDRIIE 127
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
58-183 |
9.08e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 71.40 E-value: 9.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 58 FAKAINCEHApvAEPCNECPSCLGITQGSISDVLEI-DAASNNGVDEIRDIRDKVKY-APSAVEYKVYIIDEVHMLSMGA 135
Cdd:PRK05818 27 YLTSIVCTKA--NGFCKTCESCLKILNGKYNDFYLIfDQKNPIKKEDALSIINKLNRpSVESNGKKIYIIYGIEKLNKQS 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 228822350 136 FNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC---------QRFEFrKISVNDI 183
Cdd:PRK05818 105 ANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCvqyvvlskeKKVPF-KVESNDR 160
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
11-221 |
2.57e-13 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 72.78 E-value: 2.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 11 RPQKFEDVVGQKHVT---KTLQNALLQEKVSHAyLFSGPRGTGKTTIAKVFAKAINCEHApvaepcnecpsclgitqgSI 87
Cdd:PRK13341 23 RPRTLEEFVGQDHILgegRLLRRAIKADRVGSL-ILYGPPGVGKTTLARIIANHTRAHFS------------------SL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 88 SDVLeidaasnNGVdeiRDIRDKVKYAPSAVEY----KVYIIDEVHMLSMGAFNALLKTLEEppGHVIFILATTE-PH-K 161
Cdd:PRK13341 84 NAVL-------AGV---KDLRAEVDRAKERLERhgkrTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTEnPYfE 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 228822350 162 IPPTIISRCQRFEFRKISVNDIVERLSTVVTNEG-------TQVEDEALQIVARAAEGgmrDALSLI 221
Cdd:PRK13341 152 VNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKErgygdrkVDLEPEAEKHLVDVANG---DARSLL 215
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
10-170 |
8.62e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 69.71 E-value: 8.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 10 WRPQKFEDVVGQKHvtktlqnallQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGITQGSISD 89
Cdd:PRK07993 6 WLRPDYEQLVGSYQ----------AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 90 --VLEIDAASNN-GVDEIRDIRDKVkYAPSAVE-YKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPT 165
Cdd:PRK07993 76 yyTLTPEKGKSSlGVDAVREVTEKL-YEHARLGgAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154
|
....*
gi 228822350 166 IISRC 170
Cdd:PRK07993 155 LRSRC 159
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
15-277 |
2.04e-12 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 67.22 E-value: 2.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 15 FEDVVGQ-------KHVTKTLQNALLQEK----VSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAepcnecPSCLgit 83
Cdd:COG1223 1 LDDVVGQeeakkklKLIIKELRRRENLRKfglwPPRKILFYGPPGTGKTMLAEALAGELKLPLLTVR------LDSL--- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 84 qgsISDVLEiDAASNngvdeIRDIRDKVKYAPSaveykVYIIDEVHML--------SMG----AFNALLKTLEEPPGHVI 151
Cdd:COG1223 72 ---IGSYLG-ETARN-----LRKLFDFARRAPC-----VIFFDEFDAIakdrgdqnDVGevkrVVNALLQELDGLPSGSV 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 152 FILATTEPHKIPPTIISRCQ-RFEFRKISVNDIVE----RLSTVVTNegtqvEDEALQIVARAAEGgmrdalslidqaIS 226
Cdd:COG1223 138 VIAATNHPELLDSALWRRFDeVIEFPLPDKEERKEilelNLKKFPLP-----FELDLKKLAKKLEG------------LS 200
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 228822350 227 YSDeivtTEDVLavTGSVSQQYLGNLvECIRENDVSRALQIIDEMMSKGKD 277
Cdd:COG1223 201 GAD----IEKVL--KTALKKAILEDR-EKVTKEDLEEALKQRKERKKEPKK 244
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
119-282 |
8.83e-11 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 63.35 E-value: 8.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 119 EYKVYIIDEVHMLSMG--AFNALLKTLEEPPGHVIFILATTEP---HKIPPTIISRCQRFEFRKISVNDIVERLSTVVTN 193
Cdd:COG1466 62 ERRLVIVRNAEFLKKPgeGLEALEAYLANPPPDTVLVLTAGKLdkrKKLFKALEKAGVVVECYPLKERELPAWIRQRLKA 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 194 EGTQVEDEALQIVARAAEGGMRDALSLIDQAISY--SDEIVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEM 271
Cdd:COG1466 142 AGLRIDPDAAQLLAERVGGDLLALAQELEKLALYagDGGTITLEDVEALVGDSAEFNVFDLADALLAGDAARALRILRRL 221
|
170
....*....|.
gi 228822350 272 MSKGKDPVRFM 282
Cdd:COG1466 222 LAEGEEPVLIL 232
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
8-239 |
1.15e-09 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 60.31 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 8 RTWRPQKFEDVVGQKHVTKTLQNALL----QEKVSHAY--------LFSGPRGTGKTTIAKVFAKAINcehapvaepcne 75
Cdd:COG0464 149 LELREAILDDLGGLEEVKEELRELVAlplkRPELREEYglppprglLLYGPPGTGKTLLARALAGELG------------ 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 76 cpsclgitqgsiSDVLEIDAAsnngvdEIRD---------IRDKVKYApSAVEYKVYIIDEVHMLSMG-----------A 135
Cdd:COG0464 217 ------------LPLIEVDLS------DLVSkyvgeteknLREVFDKA-RGLAPCVLFIDEADALAGKrgevgdgvgrrV 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 136 FNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQR-FEFRKIsvnDIVERLS--TVVTNEGTQVEDEALQIVARAAEG 212
Cdd:COG0464 278 VNTLLTEMEELRSDVVVIAATNRPDLLDPALLRRFDEiIFFPLP---DAEERLEifRIHLRKRPLDEDVDLEELAEATEG 354
|
250 260 270
....*....|....*....|....*....|..
gi 228822350 213 G----MRDAL-SLIDQAISYSDEIVTTEDVLA 239
Cdd:COG0464 355 LsgadIRNVVrRAALQALRLGREPVTTEDLLE 386
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
41-178 |
3.71e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.46 E-value: 3.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 41 YLFSGPRGTGKTTIAKVFAKAINCEHAPVAEpCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPsaveY 120
Cdd:smart00382 5 ILIVGPPGSGKTTLARALARELGPPGGGVIY-IDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK----P 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 228822350 121 KVYIIDEVHMLSMGAFNALL--------KTLEEPPGHVIFILATTEPHKIPPTIISR--CQRFEFRKI 178
Cdd:smart00382 80 DVLILDEITSLLDAEQEALLllleelrlLLLLKSEKNLTVILTTNDEKDLGPALLRRrfDRRIVLLLI 147
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
41-176 |
2.01e-08 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 53.83 E-value: 2.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 41 YLFSGPRGTGKTTIAKVFAkaincehapvaepcNECPSCLGITQGSISdvleIDAASNNGVDEIRDI-RDKVKYAPSave 119
Cdd:cd19481 29 ILLYGPPGTGKTLLAKALA--------------GELGLPLIVVKLSSL----LSKYVGESEKNLRKIfERARRLAPC--- 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 228822350 120 ykVYIIDEVHMLSM------------GAFNALLKTLEEPP--GHVIFILATTEPHKIPPTIIsRCQRFEFR 176
Cdd:cd19481 88 --ILFIDEIDAIGRkrdssgesgelrRVLNQLLTELDGVNsrSKVLVIAATNRPDLLDPALL-RPGRFDEV 155
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
11-235 |
4.51e-08 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 55.14 E-value: 4.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 11 RPQKFEDVVGQKHVTKTL----QNALLQEKV-SHAyLFSGPRGTGKTTIAKVFAkaincehapvaepcNECPSCLGITQG 85
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLkifiEAAKKRGEAlDHV-LLYGPPGLGKTTLANIIA--------------NEMGVNIRITSG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 86 --------------SIS--DVLEIdaasnngvDEI----RDIrDKVKYapSAVE-YKVYIIdevhmlsMGA-FNALLKTL 143
Cdd:PRK00080 85 palekpgdlaailtNLEegDVLFI--------DEIhrlsPVV-EEILY--PAMEdFRLDIM-------IGKgPAARSIRL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 144 EEPPghviFIL--ATTEPHKIPPTIISR---CQRFEFrkISVND---IVERLSTVVtneGTQVEDEALQIVARAAEGGMR 215
Cdd:PRK00080 147 DLPP----FTLigATTRAGLLTSPLRDRfgiVQRLEF--YTVEElekIVKRSARIL---GVEIDEEGALEIARRSRGTPR 217
|
250 260
....*....|....*....|....
gi 228822350 216 DALSLI----DQAISYSDEIVTTE 235
Cdd:PRK00080 218 IANRLLrrvrDFAQVKGDGVITKE 241
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
25-247 |
5.02e-08 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 54.19 E-value: 5.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 25 TKTLQN--ALLQEKVSHAY--LFSGPRGTGKTTIAKVFAKaincEHAPV----AEPCNECPSCLgitqGSISDVLEIDAA 96
Cdd:COG2842 33 TKNVRRfaEALDEARALPGigVVYGESGVGKTTAAREYAN----RNPNViyvtASPSWTSKELL----EELAEELGIPAP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 97 SNNGVDEIRDIRDKVKYAPSAVeykvyIIDEVHMLSMGAFNaLLKTLEEPPGhVIFILATTEphKIPPTIISRCQ----- 171
Cdd:COG2842 105 PGTIADLRDRILERLAGTGRLL-----IIDEADHLKPKALE-ELRDIHDETG-VGVVLIGME--RLPAKLKRYEQlysri 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 172 --RFEFRKISVND---IVERLSTVvtnegtqVEDEALQIVARAAEGGMR---DALSLIDQ-AISYSDEIVTTEDVLAVTG 242
Cdd:COG2842 176 gfWVEFKPLSLEDvraLAEAWGEL-------TDPDLLELLHRITRGNLRrldRTLRLAARaAKRNGLTKITLDHVRAAAL 248
|
....*
gi 228822350 243 SVSQQ 247
Cdd:COG2842 249 MLGEG 253
|
|
| DNA_pol3_gamma3 |
pfam12169 |
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, ... |
232-358 |
6.25e-08 |
|
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau.
Pssm-ID: 432379 [Multi-domain] Cd Length: 143 Bit Score: 51.89 E-value: 6.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 232 VTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHMLErvIVD 311
Cdd:pfam12169 1 VTAAQVRDMLGLADRGRVLDLLEALLEGDAAAALAELRDQYDAGADPVVVLRDLLELIHNLTRLKVAPDAADDLL--LPE 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 228822350 312 DQFRKL---SEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC 358
Cdd:pfam12169 79 EERARLaelAEKLSPEVLHRLWQMLLKGIEEVPNAPDPRQAAEMVLLRLA 128
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
104-259 |
2.37e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 51.57 E-value: 2.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 104 IRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFR------- 176
Cdd:PRK08485 39 IEDAKEVIAEAYIAESEEKIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKqkkpvkp 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 177 ------KISVNDIVERLstvvtNEGTQVE----DEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTGSVSQ 246
Cdd:PRK08485 119 ldldlkKLDLKDIYEFL-----KELEKENklskEELKELIESLLKECVKYKIPLNEEELEYFDKAIKLADLNAKSSYVLL 193
|
170
....*....|...
gi 228822350 247 QYLGNLVECIREN 259
Cdd:PRK08485 194 PLLLSLLEKKKTP 206
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
178-241 |
3.98e-07 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 47.14 E-value: 3.98e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 228822350 178 ISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIdQAISYSDEIVTTEDVLAVT 241
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDL-QAAAAGGGVITEEDVYEVA 63
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
96-170 |
9.21e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 50.61 E-value: 9.21e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 228822350 96 ASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRC 170
Cdd:PRK06581 66 AKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRC 140
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
11-60 |
3.00e-06 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 47.49 E-value: 3.00e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 228822350 11 RPQKFEDVVGQKHVTKTLQ---NALLQ--EKVSHAyLFSGPRGTGKTTIAKVFAK 60
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKifiEAAKQrgEALDHV-LLYGPPGLGKTTLANIIAN 55
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
186-241 |
2.76e-05 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 42.07 E-value: 2.76e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 228822350 186 RLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAI-SYSDEIVTTEDVLAVT 241
Cdd:cd18133 9 RLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAaLGDDGKISLDRVYQAV 65
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
42-155 |
4.31e-05 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 43.48 E-value: 4.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 42 LFSGPRGTGKTTIAKVFAKAINCEHAPVAepCNECPSclgitQGSISDVL-----EIDAASNNGVDEIRDIRDKVKYAPS 116
Cdd:pfam13401 9 VLTGESGTGKTTLLRRLLEQLPEVRDSVV--FVDLPS-----GTSPKDLLrallrALGLPLSGRLSKEELLAALQQLLLA 81
|
90 100 110
....*....|....*....|....*....|....*....
gi 228822350 117 AVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILA 155
Cdd:pfam13401 82 LAVAVVLIIDEAQHLSLEALEELRDLLNLSSKLLQLILV 120
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
11-60 |
8.34e-05 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 45.07 E-value: 8.34e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 228822350 11 RPQKFEDVVGQKHVTKTL----QNALL-QEKVSHAyLFSGPRGTGKTTIAKVFAK 60
Cdd:COG2255 23 RPKRLDEYIGQEKVKENLkifiEAAKKrGEALDHV-LLYGPPGLGKTTLAHIIAN 76
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
10-59 |
1.95e-04 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 44.44 E-value: 1.95e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 228822350 10 WRPQKFEDVVGQKHVTKTLQNALLQEKVSHaYLFSGPRGTGK--TTIAKVFA 59
Cdd:PRK04132 13 YRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKclTGDTKVIA 63
|
|
| TIP49 |
pfam06068 |
TIP49 P-loop domain; This family consists of the C-terminal region of several eukaryotic and ... |
122-169 |
1.68e-03 |
|
TIP49 P-loop domain; This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases.
Pssm-ID: 399217 [Multi-domain] Cd Length: 347 Bit Score: 40.76 E-value: 1.68e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIfILATT------------EPHKIPPTIISR 169
Cdd:pfam06068 277 VLFIDEVHMLDIECFSFLNRALESDLAPIV-ILATNrgictirgtdiiSPHGIPLDLLDR 335
|
|
| COG1373 |
COG1373 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
23-151 |
4.66e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440984 [Multi-domain] Cd Length: 405 Bit Score: 39.54 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 23 HVTKTLQNALlqeKVSHAYLFSGPRGTGKTTIAKVFAKA------INCEHAPVAEpcnecpsclgITQGSISDVLEidaa 96
Cdd:COG1373 8 KILDKLLKLL---DNRKAVVITGPRQVGKTTLLKQLAKElenilyINLDDPRLRA----------LAEEDPDDLLE---- 70
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 228822350 97 snngvdEIRDIRDKVKYApsaveykvyIIDEVHMLSmGAFNAlLKTL--EEPPGHVI 151
Cdd:COG1373 71 ------ALKELYPGKTYL---------FLDEIQRVP-EWEDA-LKRLvdDGRNGRFI 110
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
16-65 |
5.92e-03 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 39.00 E-value: 5.92e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 228822350 16 EDVVGQKHVTKTLQNALLQEKvsHAyLFSGPRGTGKTTIAKVFAKAINCE 65
Cdd:COG0714 12 KVYVGQEELIELVLIALLAGG--HL-LLEGVPGVGKTTLAKALARALGLP 58
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
18-84 |
8.00e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 37.48 E-value: 8.00e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 228822350 18 VVGQKHVTKTLQNAL--LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAE-PCNECPSCLGITQ 84
Cdd:pfam13191 2 LVGREEELEQLLDALdrVRSGRPPSVLLTGEAGTGKTTLLRELLRALERDGGYFLRgKCDENLPYSPLLE 71
|
|
| |
