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Conserved domains on  [gi|281403379|gb|EFB34059|]
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hypothetical protein PREVCOP_06466 [Segatella copri DSM 18205]

Protein Classification

porin family protein( domain architecture ID 10611987)

porin family protein is a member of a large superfamily consisting of classical (gram-negative ) porins which are non-specific channels for small hydrophillic molecules, maltoporin-like channels which have specificities for various sugars, and ligand-gated protein channels which cooperate with a TonB associated inner membrane complex to actively transport ligands via the proton motive force

CATH:  2.40.160.10
Gene Ontology:  GO:0009279|GO:0015288
PubMed:  31792365|31214985
SCOP:  4003061

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OMP_b-brl_2 pfam13568
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ...
 31-214 1.43e-17

Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.


:

Pssm-ID: 433316  Cd Length: 175  Bit Score: 77.44  E-value: 1.43e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 281403379   31 TDLRPFHFGVLVGTHFQDIEFQNAGpvtyldadgieqqscvtVDQDRWDTGFTVGVLGEFRLNTHFQLRiaPAMYFGTRH 110
Cdd:pfam13568   4 SRRRRLEIGVKGGFNASKLSPEPRN-----------------ISDYNPRGGFSVGVIVRYRLNNRWGFQ--PGLGYSNRG 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 281403379  111 LSFYNmleKDGAGNPIQQKQEMKTAYISSALDLIFAAQRFNNHRPYIMAGINPMMNLNSKNE-------------DYIKL 177
Cdd:pfam13568  65 WEFEF---EVETSSGDTYKTKRTSTYLELPLLAKYRFGKSNNVRLFFQAGPKLGYLLGGKFSgtdsdvtdsdasyDTDKL 141

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 281403379  178 KKTDLFLELGLGCDFYLpyfKLRPELKFMYGITDTYD 214
Cdd:pfam13568 142 RKFDYGLVIGAGLEFFN---RLTLELRYYYGLNDIFD 175
 
Name Accession Description Interval E-value
OMP_b-brl_2 pfam13568
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ...
 31-214 1.43e-17

Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.


Pssm-ID: 433316  Cd Length: 175  Bit Score: 77.44  E-value: 1.43e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 281403379   31 TDLRPFHFGVLVGTHFQDIEFQNAGpvtyldadgieqqscvtVDQDRWDTGFTVGVLGEFRLNTHFQLRiaPAMYFGTRH 110
Cdd:pfam13568   4 SRRRRLEIGVKGGFNASKLSPEPRN-----------------ISDYNPRGGFSVGVIVRYRLNNRWGFQ--PGLGYSNRG 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 281403379  111 LSFYNmleKDGAGNPIQQKQEMKTAYISSALDLIFAAQRFNNHRPYIMAGINPMMNLNSKNE-------------DYIKL 177
Cdd:pfam13568  65 WEFEF---EVETSSGDTYKTKRTSTYLELPLLAKYRFGKSNNVRLFFQAGPKLGYLLGGKFSgtdsdvtdsdasyDTDKL 141

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 281403379  178 KKTDLFLELGLGCDFYLpyfKLRPELKFMYGITDTYD 214
Cdd:pfam13568 142 RKFDYGLVIGAGLEFFN---RLTLELRYYYGLNDIFD 175
 
Name Accession Description Interval E-value
OMP_b-brl_2 pfam13568
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ...
 31-214 1.43e-17

Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.


Pssm-ID: 433316  Cd Length: 175  Bit Score: 77.44  E-value: 1.43e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 281403379   31 TDLRPFHFGVLVGTHFQDIEFQNAGpvtyldadgieqqscvtVDQDRWDTGFTVGVLGEFRLNTHFQLRiaPAMYFGTRH 110
Cdd:pfam13568   4 SRRRRLEIGVKGGFNASKLSPEPRN-----------------ISDYNPRGGFSVGVIVRYRLNNRWGFQ--PGLGYSNRG 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 281403379  111 LSFYNmleKDGAGNPIQQKQEMKTAYISSALDLIFAAQRFNNHRPYIMAGINPMMNLNSKNE-------------DYIKL 177
Cdd:pfam13568  65 WEFEF---EVETSSGDTYKTKRTSTYLELPLLAKYRFGKSNNVRLFFQAGPKLGYLLGGKFSgtdsdvtdsdasyDTDKL 141

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 281403379  178 KKTDLFLELGLGCDFYLpyfKLRPELKFMYGITDTYD 214
Cdd:pfam13568 142 RKFDYGLVIGAGLEFFN---RLTLELRYYYGLNDIFD 175
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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