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putative flagellar biosynthesis protein FlhA [Escherichia coli MS 185-1]
Protein Classification
flagellar biosynthesis protein FlhA ( domain architecture ID 10003451 )
flagellar biosynthesis protein FlhA is required for formation of the rod structure of the flagellar apparatus
List of domain hits
Name
Accession
Description
Interval
E-value
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
10-576
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 758.04
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 10 L LT INF I V V TKGA E RI S EV S ARFTLDAMPGKQMAIDADLNAGLI NQTQ A QT RR KDVAS EADFYGAMDGASKFVRGDAIAG 89
Cdd:COG1298 112 L VI INF V V I TKGA G RI A EV A ARFTLDAMPGKQMAIDADLNAGLI DEEE A RR RR EEIQR EADFYGAMDGASKFVRGDAIAG 191
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 90 MM I LA IN L IGG VC IG IFKYNL S ADA A F Q Q Y V L M TIGDGLV A QIP S LL L STAA A IIVTR VSDN GD IAHDVRN QL L A S P SV L 169
Cdd:COG1298 192 IL I TL IN I IGG LI IG VLQHGM S FGE A A Q T Y T L L TIGDGLV S QIP A LL I STAA G IIVTR AGSE GD LGEQLSG QL F A N P KA L 271
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 170 Y T A T G IMFV L AVV PGMPH F PFL MFS ALLG FTGW R MS KR PQAA EAEE K sl ETLTRTMTETSEQQV S WETIPLIE P IS L S LG 249
Cdd:COG1298 272 Y I A A G VLGL L GLI PGMPH L PFL LLA ALLG GLAY R LK KR QKEE EAEE A -- AAAAEAEAAAEPAEE S VDDLLPVD P LE L E LG 349
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 250 Y K L VA LVD KA QG NP L TQ RI R G V R QVISDGN G VLL P EI RIR E N FR LKP SQ Y A I F I N G IKADEADIPA D K L M A LPSSETY GE 329
Cdd:COG1298 350 Y G L IP LVD ES QG GD L LD RI K G I R RQLAQEL G FVV P PV RIR D N LQ LKP NE Y R I K I K G VEVARGELRP D R L L A INPGGVT GE 429
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 330 ID G VLGND PA Y G M P VT WI Q P A Q KAK A LNM GY Q V I D SAS VIATH VNKIVRSYIPD L FNYDDIT QL HN RL SSMA P R L A E D L S 409
Cdd:COG1298 430 LP G IPTKE PA F G L P AV WI D P E Q REE A ELL GY T V V D PST VIATH LSEVIKRHAAE L LGRQEVQ QL LD RL KKEY P K L V E E L V 509
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 410 - AA L NYSQ L L KV YRA LL T E G VS L RD IV TI ATV L VASSAV TKD HI LL AAD VR L AL R R S I THPFVRKQ - EL T V Y TL NN ELE N 487
Cdd:COG1298 510 p KL L SLGE L Q KV LQN LL R E R VS I RD LR TI LET L ADYAPR TKD PD LL TEH VR Q AL G R Q I VQQYAGPD g EL P V I TL DP ELE Q 589
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 488 LL TNVVN Q AQ Q AG kvmld SVPV DP NMLNQFQSTMPQVK E QMK A A G KD PVLLV P PQLRP L L A R YARL F A P G L H VLSYNE V P 567
Cdd:COG1298 590 LL LESLQ Q TE Q GS ----- YLAL DP GLAQRLLQSLAEAV E KLE A Q G EP PVLLV S PQLRP Y L R R LLER F L P D L P VLSYNE I P 664
....*....
gi 300302122 568 DEL E LKIM G 576
Cdd:COG1298 665 PDV E IESV G 673
Name
Accession
Description
Interval
E-value
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
10-576
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 758.04
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 10 L LT INF I V V TKGA E RI S EV S ARFTLDAMPGKQMAIDADLNAGLI NQTQ A QT RR KDVAS EADFYGAMDGASKFVRGDAIAG 89
Cdd:COG1298 112 L VI INF V V I TKGA G RI A EV A ARFTLDAMPGKQMAIDADLNAGLI DEEE A RR RR EEIQR EADFYGAMDGASKFVRGDAIAG 191
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 90 MM I LA IN L IGG VC IG IFKYNL S ADA A F Q Q Y V L M TIGDGLV A QIP S LL L STAA A IIVTR VSDN GD IAHDVRN QL L A S P SV L 169
Cdd:COG1298 192 IL I TL IN I IGG LI IG VLQHGM S FGE A A Q T Y T L L TIGDGLV S QIP A LL I STAA G IIVTR AGSE GD LGEQLSG QL F A N P KA L 271
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 170 Y T A T G IMFV L AVV PGMPH F PFL MFS ALLG FTGW R MS KR PQAA EAEE K sl ETLTRTMTETSEQQV S WETIPLIE P IS L S LG 249
Cdd:COG1298 272 Y I A A G VLGL L GLI PGMPH L PFL LLA ALLG GLAY R LK KR QKEE EAEE A -- AAAAEAEAAAEPAEE S VDDLLPVD P LE L E LG 349
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 250 Y K L VA LVD KA QG NP L TQ RI R G V R QVISDGN G VLL P EI RIR E N FR LKP SQ Y A I F I N G IKADEADIPA D K L M A LPSSETY GE 329
Cdd:COG1298 350 Y G L IP LVD ES QG GD L LD RI K G I R RQLAQEL G FVV P PV RIR D N LQ LKP NE Y R I K I K G VEVARGELRP D R L L A INPGGVT GE 429
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 330 ID G VLGND PA Y G M P VT WI Q P A Q KAK A LNM GY Q V I D SAS VIATH VNKIVRSYIPD L FNYDDIT QL HN RL SSMA P R L A E D L S 409
Cdd:COG1298 430 LP G IPTKE PA F G L P AV WI D P E Q REE A ELL GY T V V D PST VIATH LSEVIKRHAAE L LGRQEVQ QL LD RL KKEY P K L V E E L V 509
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 410 - AA L NYSQ L L KV YRA LL T E G VS L RD IV TI ATV L VASSAV TKD HI LL AAD VR L AL R R S I THPFVRKQ - EL T V Y TL NN ELE N 487
Cdd:COG1298 510 p KL L SLGE L Q KV LQN LL R E R VS I RD LR TI LET L ADYAPR TKD PD LL TEH VR Q AL G R Q I VQQYAGPD g EL P V I TL DP ELE Q 589
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 488 LL TNVVN Q AQ Q AG kvmld SVPV DP NMLNQFQSTMPQVK E QMK A A G KD PVLLV P PQLRP L L A R YARL F A P G L H VLSYNE V P 567
Cdd:COG1298 590 LL LESLQ Q TE Q GS ----- YLAL DP GLAQRLLQSLAEAV E KLE A Q G EP PVLLV S PQLRP Y L R R LLER F L P D L P VLSYNE I P 664
....*....
gi 300302122 568 DEL E LKIM G 576
Cdd:COG1298 665 PDV E IESV G 673
FHIPEP
pfam00771 FHIPEP family;
10-569
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 701.45
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 10 L LTIN FIV V TKGAER IS EV S ARFTLDAMPGKQMAIDADLNAGLI NQTQ A QT RR KDVAS EADFYGAMDGASKFV R GDAIAG 89
Cdd:pfam00771 100 L VIVQ FIV I TKGAER VA EV A ARFTLDAMPGKQMAIDADLNAGLI DEEE A RR RR EELQR EADFYGAMDGASKFV K GDAIAG 179
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 90 MM I LA IN L IGG VC IG IFKYNL S ADA A F Q Q Y V L M TIGDGLV A QIP S LL L STAA A IIVTRV SDN G DIAHDVRN QL L A S P SV L 169
Cdd:pfam00771 180 II I TL IN I IGG LI IG VLQHGM S FGE A A Q T Y T L L TIGDGLV S QIP A LL I STAA G IIVTRV ASE G NLGEEIVG QL F A N P KA L 259
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 170 Y T A T G IMFV L AVV PG M P HF PFL MFS ALLGF TGW R MSK R PQA A E AEE KSL E TLTR tmtetseqqvsw ETIPLIE P IS L S LG 249
Cdd:pfam00771 260 Y I A A G VLLL L GLI PG L P TL PFL LLA ALLGF LAY R LRR R KKK A A AEE AEA E EAAA ------------ AAVLPVD P LE L E LG 327
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 250 Y K L VA LVD KA QG NP L TQ RI R G V R QVISDGN G VLL P E IRIR E N FR LKP SQ Y A I F I N G IKADEADIPA D K L M A LPSSETY GE 329
Cdd:pfam00771 328 Y G L IP LVD ES QG GD L LD RI K G I R RQLALEL G FVV P P IRIR D N LQ LKP NE Y R I K I K G VEVARGELLP D H L L A MNPGGVL GE 407
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 330 I D G VLGND PA Y G M P VT WI QPA Q KAK A LNM GY Q V I D SAS VIATH VNKIVRSYIPD L FNYDDITQ L HNR L SSMA P R L A E D L - 408
Cdd:pfam00771 408 I P G IPTKE PA F G L P AV WI DEE Q REE A ELA GY T V V D PPT VIATH LTEVIKRHAAE L LGRQEVQA L LDN L KKEY P K L V E E L v 487
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 409 SAA L NYSQLL KV YRA LL T E G VS L RD IV TI ATV L VASSAV TKD HI LL AAD VR L AL R R S I THPFVRKQ - E L T V Y TL NN ELE N 487
Cdd:pfam00771 488 PKL L SLGEIQ KV LQN LL R E R VS I RD LR TI LET L ADYAPK TKD PD LL TEY VR Q AL G R Q I CQQYAGED g T L P V I TL DP ELE Q 567
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 488 LL TNVVN Q AQQA G kvml DSVPV DP NMLNQFQSTMPQVK E QMKAA G KD PVLL VP P QL R PL L A R YARL F A P G L H VLSYNE V P 567
Cdd:pfam00771 568 LL RESLQ Q SEGQ G ---- SYLAL DP DLAQRLLEALSEAV E KLEQQ G EP PVLL TS P DI R RY L R R LLER F L P D L P VLSYNE I P 643
..
gi 300302122 568 DE 569
Cdd:pfam00771 644 PD 645
flhA
PRK06012 flagellar type III secretion system protein FlhA;
10-577
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 694.56
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 10 L LT INF I V V TKGA E RI S EV S ARFTLDAMPGKQMAIDADLNAGLI NQTQ A QT RRK DVAS EADFYGAMDGASKFV R GDAIAG 89
Cdd:PRK06012 132 L VI INF V V I TKGA G RI A EV A ARFTLDAMPGKQMAIDADLNAGLI DEEE A KK RRK ELQQ EADFYGAMDGASKFV K GDAIAG 211
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 90 MM I LA IN L IGG VC IG IFKYNL S ADA A FQQ Y V L M TIGDGLV A QIP S LL L STAA A IIVTRVS DN GD IAHDVRN QL L A S P SV L 169
Cdd:PRK06012 212 IL I TV IN I IGG LI IG VVQHGM S FGE A AET Y T L L TIGDGLV S QIP A LL I STAA G IIVTRVS SD GD VGEQIVG QL F A N P KA L 291
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 170 Y T A T G IM F V L AV VPGMPH F PFL MFSA LLGF TGW R MS KR PQA A EAEEKSLE tlt RTMTETSEQQV SW ETIPLIE P IS L SL G 249
Cdd:PRK06012 292 Y I A A G VL F L L GL VPGMPH L PFL LLAG LLGF LAY R LR KR EKK A AELAAEEA --- EEEEAAEPEEE SW DDVLPVD P LE L EV G 368
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 250 Y K L VA LVD KA QG NP L TQ RIR GV R QV I SDGN G V L L P EI RIR E N FR L K P SQ Y A I F I N G IKADEADIPADK L M A LPSSETY GE 329
Cdd:PRK06012 369 Y G L IP LVD EN QG GE L LD RIR SI R KK I AQEL G F L V P PV RIR D N LQ L P P NE Y R I K I K G VEVGSGELRPGR L L A MNPGGVD GE 448
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 330 ID G VLGND PA Y G M P VT WI QP A QKAK A LNM GY Q V I D SAS V I ATH VNKIVRSYIPD L FNYDDIT QL HN RL SSMA P R L A E D L - 408
Cdd:PRK06012 449 LP G IPTKE PA F G L P AV WI DE A LREQ A QLL GY T V V D PST V V ATH LTEVIKNHAAE L LGRQEVQ QL LD RL AKEY P K L V E E L v 528
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 409 SAA L NYSQ L L KV YRA LL T E G VS L RD IV TI ATV L VASSAV TKD HIL L AAD VR LA L R R S I THPFVR - KQ EL T V Y TL NN ELE N 487
Cdd:PRK06012 529 PKV L SLGT L Q KV LQN LL K E R VS I RD LR TI LET L ADYAPI TKD PDE L TEH VR QR L G R Q I VQQYKG e DG EL P V I TL DP ELE Q 608
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 488 LL TNVVNQAQQA gkvml DSVPVD P NMLNQFQSTMPQVK E QMKAA G KD PVLLV P P Q LRP L L A R YARL F A P G L H VLSYNE V P 567
Cdd:PRK06012 609 LL LQSLQGTGGG ----- SYLALE P GLAERLLQSLQEAL E RQEMK G EP PVLLV S P A LRP Y L R R LLER F L P Q L P VLSYNE I P 683
570
....*....|
gi 300302122 568 D EL E LK I M G A 577
Cdd:PRK06012 684 D NI E IR I V G T 693
FlhA
TIGR01398 flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
10-576
0e+00
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 553.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 10 L LTI NFIV V TKGA E RI S EV S ARFTLDAMPGKQMAIDADLNAGLI NQTQ A QT RR KDVAS EADFYGAMDGASKFV R GDAIAG 89
Cdd:TIGR01398 115 L IIV NFIV I TKGA T RI A EV A ARFTLDAMPGKQMAIDADLNAGLI TEEE A KK RR EELEQ EADFYGAMDGASKFV K GDAIAG 194
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 90 MM I LA IN L IGG VC IG IFKYNL S ADA A FQQ Y VLM TIGDGLVAQIP S L LL STA AAI IVTR V S DN G DIAHDVRN QL L A S P SV L 169
Cdd:TIGR01398 195 II I TL IN I IGG LI IG VVQHGM S LSD A AST Y TIL TIGDGLVAQIP A L II STA TGL IVTR A S SE G SFGKAIVT QL G A N P RA L 274
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 170 YTATGIMFV LA V VPG M P H FPFL MFSAL L G F TG W RMSK R PQAA E AEEKSLE tl TRTMTETS E QQV S WET I PLIEPIS L S LG 249
Cdd:TIGR01398 275 LIVAAVLGL LA L VPG L P T FPFL FLAGA L A F LA W YLRR R SKQE E EAAAEAA -- KAQEEAAE E EEE S IND I LALDDLE L E LG 352
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 250 Y K L VA LVD KA QG NP L TQ RIR GV R QVISDGN G VLL P E IRIR E N F RL K P SQ Y A I F I N G IKADEADIPAD K LM A LPSSETY GE 329
Cdd:TIGR01398 353 Y G L IP LVD DS QG GD L LD RIR SI R KQLAQEY G FVM P V IRIR D N L RL P P NE Y R I K I K G VEVARGELRPG K YL A MNPGNAD GE 432
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 330 I D G VLGND PA Y G M P VT WI QPAQ K AK A LNM GY Q V I D S A S V I ATH VNKIVRSYIPD L FNYDDITQ L HN RL SSMA P R L A E D L - 408
Cdd:TIGR01398 433 I P G EETRE PA F G L P AY WI SEKN K EE A ERL GY T V V D P A T V L ATH LSEVIKNNAAE L LTRQEVQN L LD RL KEEY P K L V E E L i 512
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 409 SAALNYSQLL KV YRA LL T E G VS L R DIV TI ATV L VASSAV TKD HI LL AAD VR LA L R R S IT HPFVR - KQE L T V Y TL NNE LE N 487
Cdd:TIGR01398 513 PDKVPLGTIQ KV LQL LL R E R VS I R NLP TI LET L ADYAPI TKD PD LL VEH VR QR L G R Q IT QQYLD e DGV L P V I TL DPD LE A 592
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 488 L L TNVV nqa QQA G KV ml DSVPVD P NM L NQFQSTMPQVK E QMKAA G KD PVLL VP P QL RP LLA R YARL F A P G L H VLSYNE V P 567
Cdd:TIGR01398 593 A L AEAL --- KRD G EG -- ELLDLE P AL L EELVRAVRKAV E KLANN G ER PVLL TS P RV RP YVR R ILER F F P E L P VLSYNE I P 667
....*....
gi 300302122 568 D ELELKIM G 576
Cdd:TIGR01398 668 D NVRVETV G 676
Name
Accession
Description
Interval
E-value
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
10-576
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 758.04
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 10 L LT INF I V V TKGA E RI S EV S ARFTLDAMPGKQMAIDADLNAGLI NQTQ A QT RR KDVAS EADFYGAMDGASKFVRGDAIAG 89
Cdd:COG1298 112 L VI INF V V I TKGA G RI A EV A ARFTLDAMPGKQMAIDADLNAGLI DEEE A RR RR EEIQR EADFYGAMDGASKFVRGDAIAG 191
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 90 MM I LA IN L IGG VC IG IFKYNL S ADA A F Q Q Y V L M TIGDGLV A QIP S LL L STAA A IIVTR VSDN GD IAHDVRN QL L A S P SV L 169
Cdd:COG1298 192 IL I TL IN I IGG LI IG VLQHGM S FGE A A Q T Y T L L TIGDGLV S QIP A LL I STAA G IIVTR AGSE GD LGEQLSG QL F A N P KA L 271
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 170 Y T A T G IMFV L AVV PGMPH F PFL MFS ALLG FTGW R MS KR PQAA EAEE K sl ETLTRTMTETSEQQV S WETIPLIE P IS L S LG 249
Cdd:COG1298 272 Y I A A G VLGL L GLI PGMPH L PFL LLA ALLG GLAY R LK KR QKEE EAEE A -- AAAAEAEAAAEPAEE S VDDLLPVD P LE L E LG 349
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 250 Y K L VA LVD KA QG NP L TQ RI R G V R QVISDGN G VLL P EI RIR E N FR LKP SQ Y A I F I N G IKADEADIPA D K L M A LPSSETY GE 329
Cdd:COG1298 350 Y G L IP LVD ES QG GD L LD RI K G I R RQLAQEL G FVV P PV RIR D N LQ LKP NE Y R I K I K G VEVARGELRP D R L L A INPGGVT GE 429
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 330 ID G VLGND PA Y G M P VT WI Q P A Q KAK A LNM GY Q V I D SAS VIATH VNKIVRSYIPD L FNYDDIT QL HN RL SSMA P R L A E D L S 409
Cdd:COG1298 430 LP G IPTKE PA F G L P AV WI D P E Q REE A ELL GY T V V D PST VIATH LSEVIKRHAAE L LGRQEVQ QL LD RL KKEY P K L V E E L V 509
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 410 - AA L NYSQ L L KV YRA LL T E G VS L RD IV TI ATV L VASSAV TKD HI LL AAD VR L AL R R S I THPFVRKQ - EL T V Y TL NN ELE N 487
Cdd:COG1298 510 p KL L SLGE L Q KV LQN LL R E R VS I RD LR TI LET L ADYAPR TKD PD LL TEH VR Q AL G R Q I VQQYAGPD g EL P V I TL DP ELE Q 589
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 488 LL TNVVN Q AQ Q AG kvmld SVPV DP NMLNQFQSTMPQVK E QMK A A G KD PVLLV P PQLRP L L A R YARL F A P G L H VLSYNE V P 567
Cdd:COG1298 590 LL LESLQ Q TE Q GS ----- YLAL DP GLAQRLLQSLAEAV E KLE A Q G EP PVLLV S PQLRP Y L R R LLER F L P D L P VLSYNE I P 664
....*....
gi 300302122 568 DEL E LKIM G 576
Cdd:COG1298 665 PDV E IESV G 673
FHIPEP
pfam00771 FHIPEP family;
10-569
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 701.45
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 10 L LTIN FIV V TKGAER IS EV S ARFTLDAMPGKQMAIDADLNAGLI NQTQ A QT RR KDVAS EADFYGAMDGASKFV R GDAIAG 89
Cdd:pfam00771 100 L VIVQ FIV I TKGAER VA EV A ARFTLDAMPGKQMAIDADLNAGLI DEEE A RR RR EELQR EADFYGAMDGASKFV K GDAIAG 179
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 90 MM I LA IN L IGG VC IG IFKYNL S ADA A F Q Q Y V L M TIGDGLV A QIP S LL L STAA A IIVTRV SDN G DIAHDVRN QL L A S P SV L 169
Cdd:pfam00771 180 II I TL IN I IGG LI IG VLQHGM S FGE A A Q T Y T L L TIGDGLV S QIP A LL I STAA G IIVTRV ASE G NLGEEIVG QL F A N P KA L 259
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 170 Y T A T G IMFV L AVV PG M P HF PFL MFS ALLGF TGW R MSK R PQA A E AEE KSL E TLTR tmtetseqqvsw ETIPLIE P IS L S LG 249
Cdd:pfam00771 260 Y I A A G VLLL L GLI PG L P TL PFL LLA ALLGF LAY R LRR R KKK A A AEE AEA E EAAA ------------ AAVLPVD P LE L E LG 327
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 250 Y K L VA LVD KA QG NP L TQ RI R G V R QVISDGN G VLL P E IRIR E N FR LKP SQ Y A I F I N G IKADEADIPA D K L M A LPSSETY GE 329
Cdd:pfam00771 328 Y G L IP LVD ES QG GD L LD RI K G I R RQLALEL G FVV P P IRIR D N LQ LKP NE Y R I K I K G VEVARGELLP D H L L A MNPGGVL GE 407
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 330 I D G VLGND PA Y G M P VT WI QPA Q KAK A LNM GY Q V I D SAS VIATH VNKIVRSYIPD L FNYDDITQ L HNR L SSMA P R L A E D L - 408
Cdd:pfam00771 408 I P G IPTKE PA F G L P AV WI DEE Q REE A ELA GY T V V D PPT VIATH LTEVIKRHAAE L LGRQEVQA L LDN L KKEY P K L V E E L v 487
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 409 SAA L NYSQLL KV YRA LL T E G VS L RD IV TI ATV L VASSAV TKD HI LL AAD VR L AL R R S I THPFVRKQ - E L T V Y TL NN ELE N 487
Cdd:pfam00771 488 PKL L SLGEIQ KV LQN LL R E R VS I RD LR TI LET L ADYAPK TKD PD LL TEY VR Q AL G R Q I CQQYAGED g T L P V I TL DP ELE Q 567
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 488 LL TNVVN Q AQQA G kvml DSVPV DP NMLNQFQSTMPQVK E QMKAA G KD PVLL VP P QL R PL L A R YARL F A P G L H VLSYNE V P 567
Cdd:pfam00771 568 LL RESLQ Q SEGQ G ---- SYLAL DP DLAQRLLEALSEAV E KLEQQ G EP PVLL TS P DI R RY L R R LLER F L P D L P VLSYNE I P 643
..
gi 300302122 568 DE 569
Cdd:pfam00771 644 PD 645
flhA
PRK06012 flagellar type III secretion system protein FlhA;
10-577
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 694.56
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 10 L LT INF I V V TKGA E RI S EV S ARFTLDAMPGKQMAIDADLNAGLI NQTQ A QT RRK DVAS EADFYGAMDGASKFV R GDAIAG 89
Cdd:PRK06012 132 L VI INF V V I TKGA G RI A EV A ARFTLDAMPGKQMAIDADLNAGLI DEEE A KK RRK ELQQ EADFYGAMDGASKFV K GDAIAG 211
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 90 MM I LA IN L IGG VC IG IFKYNL S ADA A FQQ Y V L M TIGDGLV A QIP S LL L STAA A IIVTRVS DN GD IAHDVRN QL L A S P SV L 169
Cdd:PRK06012 212 IL I TV IN I IGG LI IG VVQHGM S FGE A AET Y T L L TIGDGLV S QIP A LL I STAA G IIVTRVS SD GD VGEQIVG QL F A N P KA L 291
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 170 Y T A T G IM F V L AV VPGMPH F PFL MFSA LLGF TGW R MS KR PQA A EAEEKSLE tlt RTMTETSEQQV SW ETIPLIE P IS L SL G 249
Cdd:PRK06012 292 Y I A A G VL F L L GL VPGMPH L PFL LLAG LLGF LAY R LR KR EKK A AELAAEEA --- EEEEAAEPEEE SW DDVLPVD P LE L EV G 368
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 250 Y K L VA LVD KA QG NP L TQ RIR GV R QV I SDGN G V L L P EI RIR E N FR L K P SQ Y A I F I N G IKADEADIPADK L M A LPSSETY GE 329
Cdd:PRK06012 369 Y G L IP LVD EN QG GE L LD RIR SI R KK I AQEL G F L V P PV RIR D N LQ L P P NE Y R I K I K G VEVGSGELRPGR L L A MNPGGVD GE 448
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 330 ID G VLGND PA Y G M P VT WI QP A QKAK A LNM GY Q V I D SAS V I ATH VNKIVRSYIPD L FNYDDIT QL HN RL SSMA P R L A E D L - 408
Cdd:PRK06012 449 LP G IPTKE PA F G L P AV WI DE A LREQ A QLL GY T V V D PST V V ATH LTEVIKNHAAE L LGRQEVQ QL LD RL AKEY P K L V E E L v 528
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 409 SAA L NYSQ L L KV YRA LL T E G VS L RD IV TI ATV L VASSAV TKD HIL L AAD VR LA L R R S I THPFVR - KQ EL T V Y TL NN ELE N 487
Cdd:PRK06012 529 PKV L SLGT L Q KV LQN LL K E R VS I RD LR TI LET L ADYAPI TKD PDE L TEH VR QR L G R Q I VQQYKG e DG EL P V I TL DP ELE Q 608
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 488 LL TNVVNQAQQA gkvml DSVPVD P NMLNQFQSTMPQVK E QMKAA G KD PVLLV P P Q LRP L L A R YARL F A P G L H VLSYNE V P 567
Cdd:PRK06012 609 LL LQSLQGTGGG ----- SYLALE P GLAERLLQSLQEAL E RQEMK G EP PVLLV S P A LRP Y L R R LLER F L P Q L P VLSYNE I P 683
570
....*....|
gi 300302122 568 D EL E LK I M G A 577
Cdd:PRK06012 684 D NI E IR I V G T 693
FlhA
TIGR01398 flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
10-576
0e+00
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 553.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 10 L LTI NFIV V TKGA E RI S EV S ARFTLDAMPGKQMAIDADLNAGLI NQTQ A QT RR KDVAS EADFYGAMDGASKFV R GDAIAG 89
Cdd:TIGR01398 115 L IIV NFIV I TKGA T RI A EV A ARFTLDAMPGKQMAIDADLNAGLI TEEE A KK RR EELEQ EADFYGAMDGASKFV K GDAIAG 194
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 90 MM I LA IN L IGG VC IG IFKYNL S ADA A FQQ Y VLM TIGDGLVAQIP S L LL STA AAI IVTR V S DN G DIAHDVRN QL L A S P SV L 169
Cdd:TIGR01398 195 II I TL IN I IGG LI IG VVQHGM S LSD A AST Y TIL TIGDGLVAQIP A L II STA TGL IVTR A S SE G SFGKAIVT QL G A N P RA L 274
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 170 YTATGIMFV LA V VPG M P H FPFL MFSAL L G F TG W RMSK R PQAA E AEEKSLE tl TRTMTETS E QQV S WET I PLIEPIS L S LG 249
Cdd:TIGR01398 275 LIVAAVLGL LA L VPG L P T FPFL FLAGA L A F LA W YLRR R SKQE E EAAAEAA -- KAQEEAAE E EEE S IND I LALDDLE L E LG 352
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 250 Y K L VA LVD KA QG NP L TQ RIR GV R QVISDGN G VLL P E IRIR E N F RL K P SQ Y A I F I N G IKADEADIPAD K LM A LPSSETY GE 329
Cdd:TIGR01398 353 Y G L IP LVD DS QG GD L LD RIR SI R KQLAQEY G FVM P V IRIR D N L RL P P NE Y R I K I K G VEVARGELRPG K YL A MNPGNAD GE 432
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 330 I D G VLGND PA Y G M P VT WI QPAQ K AK A LNM GY Q V I D S A S V I ATH VNKIVRSYIPD L FNYDDITQ L HN RL SSMA P R L A E D L - 408
Cdd:TIGR01398 433 I P G EETRE PA F G L P AY WI SEKN K EE A ERL GY T V V D P A T V L ATH LSEVIKNNAAE L LTRQEVQN L LD RL KEEY P K L V E E L i 512
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 409 SAALNYSQLL KV YRA LL T E G VS L R DIV TI ATV L VASSAV TKD HI LL AAD VR LA L R R S IT HPFVR - KQE L T V Y TL NNE LE N 487
Cdd:TIGR01398 513 PDKVPLGTIQ KV LQL LL R E R VS I R NLP TI LET L ADYAPI TKD PD LL VEH VR QR L G R Q IT QQYLD e DGV L P V I TL DPD LE A 592
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 488 L L TNVV nqa QQA G KV ml DSVPVD P NM L NQFQSTMPQVK E QMKAA G KD PVLL VP P QL RP LLA R YARL F A P G L H VLSYNE V P 567
Cdd:TIGR01398 593 A L AEAL --- KRD G EG -- ELLDLE P AL L EELVRAVRKAV E KLANN G ER PVLL TS P RV RP YVR R ILER F F P E L P VLSYNE I P 667
....*....
gi 300302122 568 D ELELKIM G 576
Cdd:TIGR01398 668 D NVRVETV G 676
EscV
COG4789 Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and ...
11-576
6.66e-146
Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443818 [Multi-domain]
Cd Length: 688
Bit Score: 436.92
E-value: 6.66e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 11 L T I - N FIV V TKG A ER IS EV S ARF T LDAMPGKQM A IDADL N AG L I NQTQ A QT RR KDVAS E ADF YGAMDGA S KFV R GDAIAG 89
Cdd:COG4789 117 I T V v Q FIV I TKG S ER VA EV A ARF S LDAMPGKQM S IDADL R AG V I DADE A RR RR ALLEK E SQL YGAMDGA M KFV K GDAIAG 196
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 90 MM I LAI N L IGG VC IG IFKYNL SA DA A FQQ Y VLM TIGDGLVAQIP S LL L S TA A A IIVTRVS DNG D -- IAHDVRN QLLA S P S 167
Cdd:COG4789 197 II I ILV N I IGG IA IG VLQHGM SA SE A LHT Y SIL TIGDGLVAQIP A LL I S IT A G IIVTRVS GDE D sn LGREIVS QLLA Q P K 276
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 168 V L YT A TGIMFVL A VV PG M P HFP FL MFS ALLG FT G WRMSK R PQ -- AA E AE EKS L ET L TRTMTET SE QQVS - WETI P LIE P I 244
Cdd:COG4789 277 A L LI A AVLLLLF A LI PG F P TLV FL LLA ALLG GL G FKLLR R KR ra AA A AE SEP L PA L QAAGAKG SE AGLI d GDDF P PTV P L 356
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 245 S L S L GYK L VALVDKAQ gnp L T Q R IR GV R QVISDGN GV L LP E I R IR E N FR L KPSQ Y A I FI N GIKADEADI P ADK L MALPSS 324
Cdd:COG4789 357 I L R L SPS L APALEAEA --- L N Q E IR RL R NRLFEDL GV P LP G I H IR F N PG L PDDE Y S I LL N EVPVARGTL P PGH L LVRDDV 433
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 325 ET -- YGE I DGVL G ND P AYGM P VT W IQPAQKAKALNM G YQ V I D SAS V I A T H VNKIV R SYIPDLFNYDDITQ L HNRLSSMA P 402
Cdd:COG4789 434 DE le ALG I PAEE G EL P LGEG P SL W VPAEHAELLEKA G IK V R D AED V L A L H LSLVL R RHAAEFIGIQETRY L LDQMEKKY P 513
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 403 R L AEDLSAA L NYSQLLK V YRA L LT EG V S L R DIVT I ATV L VASSAVT KD HIL L AAD VR L AL R R S I T H PFVRK Q - E L TVYT L 481
Cdd:COG4789 514 E L VKEVQRV L PLQRIAE V LQR L VE EG I S I R NLRL I LEA L IEWGPKE KD VVM L TEY VR I AL K R Y I C H RYSGG Q g T L PALL L 593
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 482 NN E L E NLLTNVVN Q AQQAGKVM LD SVPVD p NM L N Q FQSTMPQV keqm KAA G K DPVLL VPPQL R plla R YA R LF ---- A P G 557
Cdd:COG4789 594 DP E I E EMIRGAIR Q TSAGSFLA LD PEQSQ - AI L E Q LRQALGPL ---- PPG G Q DPVLL TSMDI R ---- R FV R KL iere F P D 664
570
....*....|....*....
gi 300302122 558 L H VLSY N E VPD E LELKIM G 576
Cdd:COG4789 665 L P VLSY Q E LTP E IRVQPL G 683
hrcV
TIGR01399 type III secretion protein, HrcV family; Members of this family are closely homologous to the ...
8-576
3.87e-119
type III secretion protein, HrcV family; Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273600 [Multi-domain]
Cd Length: 677
Bit Score: 367.44
E-value: 3.87e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 8 L TLLTIN FIV V TKG A ER IS EVSARF T LDAMPGKQM A IDADL N AG L I NQTQ A QT RR KDVAS E ADF YGAMDGA S KFV R GDAI 87
Cdd:TIGR01399 109 L IITIVQ FIV I TKG S ER VA EVSARF S LDAMPGKQM S IDADL R AG V I DADE A RR RR STLEK E SQL YGAMDGA M KFV K GDAI 188
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 88 AG MM I LA IN L IGG VC IG IFKYNL SA DA A FQQ Y VLM TIGDGLV A QIP S LL L S TA A A IIVTRV S -- DNGDIAHDVRN QL LAS 165
Cdd:TIGR01399 189 AG II I VL IN I IGG IS IG VTQHGM SA SE A LHL Y TVL TIGDGLV S QIP A LL I S VT A G IIVTRV P ge AERNLGREIGH QL TSQ 268
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 166 P SV L YT A TGIMFVL A VV PG M P HFP F LMFSA LL GFT G WRM S K R PQAAEAEE K SLETLTRTMTETSE - QQVSWETIPLIE P I 244
Cdd:TIGR01399 269 P RA L LL A AVLLLGF A LI PG F P LLV F ALLAV LL AAA G YLL S R R KRSRAKAN K AQASGAVASAPGAA a PIKNLDPFAEAC P L 348
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 245 S L S L GYK L VALV DK aqg NP L T Q R I RGV R QVISDGN G VL LP E I R IR ENFR L KPSQYA I FINGIKADEAD IP ADK l M AL PSS 324
Cdd:TIGR01399 349 I L R L SPD L QSSA DK --- DT L D Q E I ERM R WALFEDL G IP LP G I I IR VGDS L PDNEFR I LLYEVPVLRDT IP PGH - V AL NDG 424
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 325 ETYG E ID G V -- LGNDPAY G M - PVT W IQPAQKA K ALNM G YQVIDSAS VI ATHVNKIVRSYIPDLFNYDDITQ L HNRLSSMA 401
Cdd:TIGR01399 425 VDNI E VA G I pa ISGKRWP G E s QRV W VTEEGAE K LQGA G LGYFSDSQ VI THRLKATLLRNAQEFIGIQETRY L LDQMEREY 504
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 402 P R L AEDLSAA L NYSQLLK V YRA L LT E G VS L R DIVT I ATV L VASSAVT KD HIL L AAD VR L AL R R S I T H PFVRKQE - L TVYT 480
Cdd:TIGR01399 505 P E L VKEVQRV L PLQRIAE V LQR L VS E Q VS I R NLRL I LET L IEWAQRE KD VVM L TEY VR I AL K R Y I C H RYANGGR q L SAVL 584
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 481 LNN E L E N L LTNVVN Q AQQAGKVM LD SVPVD p NM L N Q FQSTMPQVKE qmka A GKD PVLL VPPQL R PLLARYARLFA P G L H V 560
Cdd:TIGR01399 585 IDP E I E E L IRGAIR Q TSTGTYLA LD PDDSE - QL L D Q IRQAVGDLPR ---- A PSQ PVLL TSMDI R RYVRKMIESEF P D L P V 659
570
....*....|....*.
gi 300302122 561 LSY N E VPD E L E LKIM G 576
Cdd:TIGR01399 660 LSY Q E LGE E I E VQVL G 675
flhA
PRK12792 flagellar biosynthesis protein FlhA; Reviewed
10-578
9.24e-109
flagellar biosynthesis protein FlhA; Reviewed
Pssm-ID: 237205
Cd Length: 694
Bit Score: 340.94
E-value: 9.24e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 10 L L T I NF I V V TKGA E RI S EV S ARFTLDA M PGKQMAIDADL N AGLI NQTQ AQ T RR KDVAS E AD F Y G A MDGASKFVRGDAIA G 89
Cdd:PRK12792 129 L I T V NF L V I TKGA T RI A EV G ARFTLDA I PGKQMAIDADL S AGLI DDKE AQ R RR RELEE E SA F F G S MDGASKFVRGDAIA S 208
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 90 MM I L A I N LI GG VC IG IFKYNLSADA A FQQYVLMTI GDGLV A QIP S L LL S T AA AII V TRVSDN G DIAHD V RN QL L A S P SV L 169
Cdd:PRK12792 209 LI I I A V N IF GG II IG VTRHGMPLGQ A ADVFTKLSV GDGLV S QIP A L IV S L AA GLL V SKGGTR G SAEQA V LG QL G A Y P RA L 288
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 170 YT A TGI MFVLA V VPG M P HF PF LMFSALLG F TGWRMSK R PQ A AE A E E KSLETLTRTMTETSEQQVSW E TIPLI E p I S L S LG 249
Cdd:PRK12792 289 SV A ALL MFVLA I VPG L P FL PF ALLGGVMA F VAYTIPR R RA A RA A A E AAKVKREEESAQAEAKDSVK E QLRTA E - I E L C LG 367
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 250 YK L V A LVDK A QGN p L TQ R IRGV R QVISDGN G VLL PEI RIRENFR L K P SQ Y A I F I N G IKADEADIPADK L MALPSSETYGE 329
Cdd:PRK12792 368 KQ L A A QLQG A HAE - L AH R VAKM R RKFAKQY G FVV PEI KLTDSLS L P P KT Y Q I K I H G TVVATQELRPGE L LVVVGDGPRPD 446
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 330 ID G VLGND PA Y GM PVT W IQP A QKAKALNM G YQVI D S ASV IA TH VNKIV R SYI P D L FN Y D D ITQ L HN RL SSMAP RL AE D L - 408
Cdd:PRK12792 447 VP G EEVRE PA F GM KAL W VPD A FANEVRRD G FEPV D N ASV LL TH LSEVI R NNL P Q L LS Y K D MRA L LD RL DPEYK RL ID D I c 526
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 409 SAALN YS Q L LK V YRA LL T E G VS L R DIVT I -- A TVLV A SS A VTKDH I ll A AD VR LALRRS I THPFVRKQE L T V YT L N N ELE 486
Cdd:PRK12792 527 PSQIS YS G L QA V LKL LL A E R VS I R NLHL I le A VAEI A PH A RRAEQ I -- A EH VR MRIAQQ I CGDLSDNGV L K V LR L G N RWD 604
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 487 NLLTNVVNQAQQAGK V ML D svp V DP NMLN QF QSTMPQVKEQMKAA G KDP VL LVP P QL RP LLARYA - RLF a P G L H VLS YN E 565
Cdd:PRK12792 605 LAFHQSLKRDAKGEV V EF D --- I DP RLVE QF GTEASEAIRERMDQ G HQF VL VTA P EA RP YVRMII e RLF - P T L P VLS HL E 680
570
....*....|...
gi 300302122 566 VPDEL E L K IM G AL 578
Cdd:PRK12792 681 IARGV E I K SL G TI 693
PRK12720
PRK12720 EscV/YscV/HrcV family type III secretion system export apparatus protein;
9-578
7.15e-101
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 183699 [Multi-domain]
Cd Length: 675
Bit Score: 320.13
E-value: 7.15e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 9 T LL TI - N FIV V TKG A ER IS EVSARF T LD A MPGKQM A ID A D LN AG L I NQTQ A QTR R KD V AS E ADFY GAMDGA S KFV R GDAI 87
Cdd:PRK12720 121 T II TI v Q FIV I TKG S ER VA EVSARF S LD G MPGKQM S ID G D MR AG V I DADE A RRL R QH V QK E SRLL GAMDGA M KFV K GDAI 200
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 88 AG MMILAI N L IGG VC IG IFKYNL SA DA A FQQ Y VLMT IGDGL VA QIPSLL L S TA A A IIVTRV -- SDNGDI A HDVRN Q LLAS 165
Cdd:PRK12720 201 AG IIVILV N I IGG II IG VMQHDM SA SE A VNT Y AVLS IGDGL CG QIPSLL I S IT A G IIVTRV pg EKRQNL A NELSS Q IGRQ 280
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 166 P SV L YT A TGIMFVL A VV PG M P HFP F LMFS AL LGFTGWRMSKRPQAAE A E eksletl TRTMTETS E QQVSWETI P LIE P IS 245
Cdd:PRK12720 281 P QA L WL A AVVLMLF A LI PG F P FIT F AFLA AL VAAPAILLRRKKSVVS A N ------- GVEAGGSE E GPEGDSMV P GAC P LM 353
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 246 L S L GYK L valvdka QGNP L TQR I RGV R QVISDGN GV L LPE IR I RENFR L KPSQYAIFINGIKADEADI P ADK L MA L -- P S 323
Cdd:PRK12720 354 L R L APT L ------- HSAD L IRD I DAL R WFLFEDL GV P LPE VN I EVDPE L TEKTLTVLLYQEPVLSLSL P PQA L LL L ig P D 426
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 324 SETY G EIDGV lgnd P AYGMPVT W IQPA Q KAK A LNM G YQ V IDSASV I ATHVNKIVRS Y IPDLFNYDDITQ L HNRLSSMAPR 403
Cdd:PRK12720 427 ASLV G DSQTL ---- P NGMGQIC W LTKD Q AEQ A QGF G LD V FAGSQR I SALLKCVLLR Y MGEFIGVQETRY L MDAMEKRYGE 502
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 404 L AED L SAA L NYSQLLKVYRA L LT E G VS L RD IV TI ATV LV ASSAVT KD HIL L AAD VR L ALRR S I THP F VRKQE - L T V YTLN 482
Cdd:PRK12720 503 L VKE L QRQ L PVGKIAEILQR L VS E R VS I RD LR TI FGT LV EWAPRE KD VVM L TEY VR I ALRR H I LRR F NHEGK w L P V LRIG 582
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 483 NEL ENL LTNVVN Q AQQAGKVM L D S vpvdpnml NQFQSTMPQVKEQM K AAG k DP VL LVPPQL R plla R YA R ------ LF A p 556
Cdd:PRK12720 583 EGI ENL IRESIR Q TSAGTYSA L S S -------- RHSTQILQLIEQAL K QSQ - KL VL VTSVDV R ---- R FL R kiiert LF D - 648
570 580
....*....|....*....|..
gi 300302122 557 g L H VLS YN E VP DE L E L K IM G AL 578
Cdd:PRK12720 649 - L P VLS WQ E LG DE A E I K VV G SI 669
PRK15337
PRK15337 EscV/YscV/HrcV family type III secretion system export apparatus protein;
13-578
2.42e-100
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 237946 [Multi-domain]
Cd Length: 686
Bit Score: 318.86
E-value: 2.42e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 13 IN FIV V TKG A ER IS EV S ARF T LD A MPGKQM A IDADL N AG L I NQTQAQT RR KDVAS E ADF YG AM DGA S KF VR GDAIAG MM I 92
Cdd:PRK15337 124 VQ FIV I TKG S ER VA EV A ARF S LD G MPGKQM S IDADL K AG I I DADGVKE RR SVLER E SQL YG SF DGA M KF IK GDAIAG II I 203
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 93 LAI NLIGG VCI G IFKYNLSADA A FQQ Y VLM TIGDGLVAQIP S LL L S TA A AI IVTRV SDNG D - IAHDVRN QLL AS P S VL YT 171
Cdd:PRK15337 204 IFV NLIGG ISV G MTQHGMDLSS A LST Y TIL TIGDGLVAQIP A LL I S IS A GF IVTRV NGDS D n LGRNIMS QLL SN P F VL VV 283
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 172 ATGIMFVLAVV PG M P HFP FL MFSAL LG ---- F TGW R MS K RPQ A AEAEEKSLET L TRTMTET S E ------- QQ V SW ET I PL 240
Cdd:PRK15337 284 TAILALSIGLL PG F P LPV FL LLAVV LG vlfy F KKF R KK K KSA A EPDTSGGEAP L DIDEKAG S S lgligdl DK V IP ET V PL 363
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 241 I ep ISLSLGYK lvalv DKAQGNP L TQ R I R gv R Q VIS D g N GV L LP E I RI R ENFR L KPSQYAIF IN G I K A DEAD I PA D KLMA 320
Cdd:PRK15337 364 I -- LLVPEARR ----- PDLEKEN L AE R L R -- S Q FFI D - Y GV R LP D I LL R YSEG L DDNSIVVL IN E I R A AQFT I YF D LHRV 433
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 321 LPS S ETYGEIDGVLGNDPAY G MPVT W IQPAQKA K ALNM GY QVIDSASVIATHVNKIVRSY I PDL F NYDDITQ L HNR L SSM 400
Cdd:PRK15337 434 VNY S DELVSLGINPTIIDSG G EQYY W VPHEDTE K LAKL GY VLRSAIDELYHCLSVLLLHN I NEF F GIQETKH L LDQ L EKK 513
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 401 A P R L AEDLSAALNYSQLLK V YRA LL T E GV S L R DIVT I ATV L VASSAVT KD H I L L AAD VR L AL R R S I T H P F VRKQ EL TVYT 480
Cdd:PRK15337 514 Y P D L LKEVYRHATVQRISE V LQR LL S E RI S I R NMKL I MEA L ALWAPRE KD V I M L VEH VR G AL A R Y I C H K F AAGG EL RAVV 593
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 481 L NN E L E NLLTNVVN Q A qq A G KVM L D svp V DP NMLNQFQSTMPQVKEQMKA A GK D P VLLV PPQL R plla R YARLFA ---- P 556
Cdd:PRK15337 594 L SA E V E DAIRKGIR Q T -- S G GTF L N --- L DP AESENLMDLLTLALDDLGI A HR D I VLLV SVDI R ---- R FVKKLI egrf P 664
570 580
....*....|....*....|..
gi 300302122 557 G L H VLS YN E VP D EL E LKIMGAL 578
Cdd:PRK15337 665 E L E VLS FG E IA D SV E VNVIKTI 686
PRK05910
PRK05910 type III secretion system protein; Validated
8-578
2.12e-39
type III secretion system protein; Validated
Pssm-ID: 168293
Cd Length: 584
Bit Score: 152.25
E-value: 2.12e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 8 L T L LTI NF I V V TKG A ERI S EV S ARF T L D A M PGKQM AI DADL NA G LINQTQAQTRRKDVAS E A DF YG AM D G ASK FV R GDAI 87
Cdd:PRK05910 114 L L L FLV NF L V I TKG S ERI A EV R ARF S L E A L PGKQM SL DADL VS G RASYSRVSKQKNSLLE E S DF FS AM E G VFR FV K GDAI 193
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 88 AGMMI L AI N LIGGVCI G ifkyn LSADA A FQQYV L MTI GD G LV A Q I P S LL L S T AAA IIVTR V SDNGDIAHDVRNQLLA S PS 167
Cdd:PRK05910 194 MSCIL L GV N ILAATFL G ----- RATGY A VGDLW L TVL GD A LV S Q V P A LL T S C AAA TLISK V GEKESLLQHLLDYYEQ S RQ 268
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 168 VLYTATGIMFV LA VV PG M P HF P F L M FS A LL g F TGWR mskrpqaaea EEK S L ETL trtmtetseqqvswetipli EPISLS 247
Cdd:PRK05910 269 HFRFIALLLCS LA CI PG A P KA P I L G FS V LL - F LAYK ---------- NPS S G ETL -------------------- LFQKER 317
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 248 LGYKLV AL V D KAQ GNP l TQRI R GV R QV I SDGN GV LL PE --- I R IR E nfrlkpsqyaifingikadeadipadklmalpss 324
Cdd:PRK05910 318 FEFVEL AL P D EGV GNP - ANLY R AA R EE I FQEL GV VF PE eiv V R HV E ---------------------------------- 362
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 325 etygeidgvlgndpaygmpvtwiqpaq KAKA L NMGY Q VIDSASVIATHVNKIV R SYI P DLFNYDDITQ L HNRLSSM A PRL 404
Cdd:PRK05910 363 --------------------------- SSPR L IFSG Q EVYLRELSCPAILPSL R NLA P EAISERFVKR L VEEFQEV A GIS 415
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 405 A E D - LSAALNYSQ L LKVY RAL LT E G VSL RDIVT I ATVLVASSAVT K DHIL L AAD VR LA L RRS I THP - FV R KQE L T V Y T LN 482
Cdd:PRK05910 416 I E E i IPKKISENS L VFLL RAL VR E R VSL HLFPK I LEAIAVYGSQG K SSEE L VEK VR KY L GKQ I GRS l WN R QDT L E V I T ID 495
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300302122 483 NEL E NL ltnv VNQAQQAGKVMLDS vpvdp NMLN Q FQ S TMPQVK E qmkaa G KDPVLLVPPQL R PL L ARYARLFA P G L H VLS 562
Cdd:PRK05910 496 SHV E QF ---- IRDSYSKSNPDMNE ----- KVVA Q VK S LLERSG E ----- G NFRAIVTGCET R FE L KKMVDPYF P D L L VLS 561
570
....*....|....*.
gi 300302122 563 YN E V P D E LELKIM GA L 578
Cdd:PRK05910 562 HS E L P E E IPISLL GA V 577
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
