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Conserved domains on  [gi|307199426|gb|EFN80044|]
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Histone-lysine N-methyltransferase SETMAR, partial [Harpegnathos saltator]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_48 pfam17906
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ...
 1-49 7.65e-14

HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.


:

Pssm-ID: 465558 [Multi-domain]  Cd Length: 50  Bit Score: 60.61  E-value: 7.65e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 307199426    1 KHHLREVLHYVIAK-RNATETYRLLVEMYGNHVPPNTTCKEWFRRFQNND 49
Cdd:pfam17906   1 KIHLRHCILYEFLQgKSAAEAYRNICEVYGEDAVSERTFQRWFARFRSGD 50
HTH_ARSR super family cl46857
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ...
 61-107 3.60e-03

Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.


The actual alignment was detected with superfamily member smart00347:

Pssm-ID: 481197 [Multi-domain]  Cd Length: 101  Bit Score: 34.11  E-value: 3.60e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 307199426    61 PKNFEDTDLEALLTVDC--CQTQSELAVALNVERSTV---AKRLKAMGMIQK 107
Cdd:smart00347   5 PLGLTPTQFLVLRILYEegPLSVSELAKRLGVSPSTVtrvLDRLEKKGLVRR 56
 
Name Accession Description Interval E-value
HTH_48 pfam17906
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ...
 1-49 7.65e-14

HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.


Pssm-ID: 465558 [Multi-domain]  Cd Length: 50  Bit Score: 60.61  E-value: 7.65e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 307199426    1 KHHLREVLHYVIAK-RNATETYRLLVEMYGNHVPPNTTCKEWFRRFQNND 49
Cdd:pfam17906   1 KIHLRHCILYEFLQgKSAAEAYRNICEVYGEDAVSERTFQRWFARFRSGD 50
HTH_MARR smart00347
helix_turn_helix multiple antibiotic resistance protein;
61-107 3.60e-03

helix_turn_helix multiple antibiotic resistance protein;


Pssm-ID: 197670 [Multi-domain]  Cd Length: 101  Bit Score: 34.11  E-value: 3.60e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 307199426    61 PKNFEDTDLEALLTVDC--CQTQSELAVALNVERSTV---AKRLKAMGMIQK 107
Cdd:smart00347   5 PLGLTPTQFLVLRILYEegPLSVSELAKRLGVSPSTVtrvLDRLEKKGLVRR 56
Lrp COG1522
DNA-binding transcriptional regulator, Lrp family [Transcription];
66-109 4.84e-03

DNA-binding transcriptional regulator, Lrp family [Transcription];


Pssm-ID: 441131 [Multi-domain]  Cd Length: 138  Bit Score: 34.37  E-value: 4.84e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 307199426  66 DTDLE--ALLTVDCCQTQSELAVALNVERSTVAKRLKAM---GMIQKVG 109
Cdd:COG1522    5 EIDRRilRLLQEDGRLSFAELAERVGLSESTVLRRVRRLeeaGVIRGYG 53
 
Name Accession Description Interval E-value
HTH_48 pfam17906
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ...
 1-49 7.65e-14

HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.


Pssm-ID: 465558 [Multi-domain]  Cd Length: 50  Bit Score: 60.61  E-value: 7.65e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 307199426    1 KHHLREVLHYVIAK-RNATETYRLLVEMYGNHVPPNTTCKEWFRRFQNND 49
Cdd:pfam17906   1 KIHLRHCILYEFLQgKSAAEAYRNICEVYGEDAVSERTFQRWFARFRSGD 50
HTH_MARR smart00347
helix_turn_helix multiple antibiotic resistance protein;
61-107 3.60e-03

helix_turn_helix multiple antibiotic resistance protein;


Pssm-ID: 197670 [Multi-domain]  Cd Length: 101  Bit Score: 34.11  E-value: 3.60e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 307199426    61 PKNFEDTDLEALLTVDC--CQTQSELAVALNVERSTV---AKRLKAMGMIQK 107
Cdd:smart00347   5 PLGLTPTQFLVLRILYEegPLSVSELAKRLGVSPSTVtrvLDRLEKKGLVRR 56
Lrp COG1522
DNA-binding transcriptional regulator, Lrp family [Transcription];
66-109 4.84e-03

DNA-binding transcriptional regulator, Lrp family [Transcription];


Pssm-ID: 441131 [Multi-domain]  Cd Length: 138  Bit Score: 34.37  E-value: 4.84e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 307199426  66 DTDLE--ALLTVDCCQTQSELAVALNVERSTVAKRLKAM---GMIQKVG 109
Cdd:COG1522    5 EIDRRilRLLQEDGRLSFAELAERVGLSESTVLRRVRRLeeaGVIRGYG 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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