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Conserved domains on  [gi|308248894|gb|EFO92846|]
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hypothetical protein CRE_20151 [Caenorhabditis remanei]

Protein Classification

RSD-2 domain-containing protein( domain architecture ID 10540659)

RSD-2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RSD-2 pfam07547
RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. ...
 92-175 1.26e-28

RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi. Mutations in the rsd-2 gene do not effect somatic genes but only germline expressed genes.


:

Pssm-ID: 400093  Cd Length: 83  Bit Score: 108.93  E-value: 1.26e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308248894   92 FSFLDTHPTYSKKKVYAGGFGHVEIEDHLsEKMDRGIVYKVELSLNVLEIKDNQKPVFKVTKVYELLESEDGEAFLNELY 171
Cdd:pfam07547   1 FSSNPNHLTYNRKVAFADWYGLVDISDVK-ESMERGTVYKTEITVNDLDYEDNGNPLFKVSPLKGKIDPDDSEEFLQKMY 79


                  ....
gi 308248894  172 EFDE 175
Cdd:pfam07547  80 EFEE 83
RSD-2 pfam07547
RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. ...
 394-490 8.61e-23

RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi. Mutations in the rsd-2 gene do not effect somatic genes but only germline expressed genes.


:

Pssm-ID: 400093  Cd Length: 83  Bit Score: 92.37  E-value: 8.61e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308248894  394 FSSNQKHGSYNKTVAFSDSYGLVRIPESNASLKHMAVYNTLIQLLVLfnlniqsdkvrfrcQNEDKLKPIFIsVGPLKQD 473
Cdd:pfam07547   1 FSSNPNHLTYNRKVAFADWYGLVDISDVKESMERGTVYKTEITVNDL--------------DYEDNGNPLFK-VSPLKGK 65

                          90
                  ....*....|....*...
gi 308248894  474 -ENDPNARFIESMYNYED 490
Cdd:pfam07547  66 iDPDDSEEFLQKMYEFEE 83
 
Name Accession Description Interval E-value
RSD-2 pfam07547
RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. ...
 92-175 1.26e-28

RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi. Mutations in the rsd-2 gene do not effect somatic genes but only germline expressed genes.


Pssm-ID: 400093  Cd Length: 83  Bit Score: 108.93  E-value: 1.26e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308248894   92 FSFLDTHPTYSKKKVYAGGFGHVEIEDHLsEKMDRGIVYKVELSLNVLEIKDNQKPVFKVTKVYELLESEDGEAFLNELY 171
Cdd:pfam07547   1 FSSNPNHLTYNRKVAFADWYGLVDISDVK-ESMERGTVYKTEITVNDLDYEDNGNPLFKVSPLKGKIDPDDSEEFLQKMY 79


                  ....
gi 308248894  172 EFDE 175
Cdd:pfam07547  80 EFEE 83
RSD-2 pfam07547
RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. ...
 394-490 8.61e-23

RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi. Mutations in the rsd-2 gene do not effect somatic genes but only germline expressed genes.


Pssm-ID: 400093  Cd Length: 83  Bit Score: 92.37  E-value: 8.61e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308248894  394 FSSNQKHGSYNKTVAFSDSYGLVRIPESNASLKHMAVYNTLIQLLVLfnlniqsdkvrfrcQNEDKLKPIFIsVGPLKQD 473
Cdd:pfam07547   1 FSSNPNHLTYNRKVAFADWYGLVDISDVKESMERGTVYKTEITVNDL--------------DYEDNGNPLFK-VSPLKGK 65

                          90
                  ....*....|....*...
gi 308248894  474 -ENDPNARFIESMYNYED 490
Cdd:pfam07547  66 iDPDDSEEFLQKMYEFEE 83
 
Name Accession Description Interval E-value
RSD-2 pfam07547
RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. ...
 92-175 1.26e-28

RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi. Mutations in the rsd-2 gene do not effect somatic genes but only germline expressed genes.


Pssm-ID: 400093  Cd Length: 83  Bit Score: 108.93  E-value: 1.26e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308248894   92 FSFLDTHPTYSKKKVYAGGFGHVEIEDHLsEKMDRGIVYKVELSLNVLEIKDNQKPVFKVTKVYELLESEDGEAFLNELY 171
Cdd:pfam07547   1 FSSNPNHLTYNRKVAFADWYGLVDISDVK-ESMERGTVYKTEITVNDLDYEDNGNPLFKVSPLKGKIDPDDSEEFLQKMY 79


                  ....
gi 308248894  172 EFDE 175
Cdd:pfam07547  80 EFEE 83
RSD-2 pfam07547
RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. ...
 394-490 8.61e-23

RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi. Mutations in the rsd-2 gene do not effect somatic genes but only germline expressed genes.


Pssm-ID: 400093  Cd Length: 83  Bit Score: 92.37  E-value: 8.61e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308248894  394 FSSNQKHGSYNKTVAFSDSYGLVRIPESNASLKHMAVYNTLIQLLVLfnlniqsdkvrfrcQNEDKLKPIFIsVGPLKQD 473
Cdd:pfam07547   1 FSSNPNHLTYNRKVAFADWYGLVDISDVKESMERGTVYKTEITVNDL--------------DYEDNGNPLFK-VSPLKGK 65

                          90
                  ....*....|....*...
gi 308248894  474 -ENDPNARFIESMYNYED 490
Cdd:pfam07547  66 iDPDDSEEFLQKMYEFEE 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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