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Conserved domains on  [gi|316983586|gb|EFV62568|]
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fimbrial domain protein [Neisseria meningitidis H44/76]

Protein Classification

pilin( domain architecture ID 10443581)

pilin similar to fimbrial protein PilE, which is required for pilus biogenesis, as well as fimbrial protein PilA, which is responsible for the adhesive property of the pilus, and Acinetobacter baylyi ComP which is the major pilin (PilA-homolog) in A. bayli

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pilin pfam00114
Pilin (bacterial filament); Proteins with only the short N-terminal methylation site are not ...
 2-81 9.75e-15

Pilin (bacterial filament); Proteins with only the short N-terminal methylation site are not separated from the noise. The Prosite pattern detects those better.


:

Pssm-ID: 395064  Cd Length: 108  Bit Score: 64.71  E-value: 9.75e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316983586    2 AEGQKSAVTEYYLNHGEWPGNNSS-AGVATSANIKGKYVEKVEVK-NGVVTATMLSTGVNKeIKGKKLSLWAKRQDGSVK 79
Cdd:pfam00114  12 ASGLKTAVAEYALNEGSFPTAAAAdIGLTSSTAILGVISVTVEGAgTGTITATFGGGGASD-ISGKTLTLTRTANDGSGS 90


                  ..
gi 316983586   80 WF 81
Cdd:pfam00114  91 WT 92
 
Name Accession Description Interval E-value
Pilin pfam00114
Pilin (bacterial filament); Proteins with only the short N-terminal methylation site are not ...
 2-81 9.75e-15

Pilin (bacterial filament); Proteins with only the short N-terminal methylation site are not separated from the noise. The Prosite pattern detects those better.


Pssm-ID: 395064  Cd Length: 108  Bit Score: 64.71  E-value: 9.75e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316983586    2 AEGQKSAVTEYYLNHGEWPGNNSS-AGVATSANIKGKYVEKVEVK-NGVVTATMLSTGVNKeIKGKKLSLWAKRQDGSVK 79
Cdd:pfam00114  12 ASGLKTAVAEYALNEGSFPTAAAAdIGLTSSTAILGVISVTVEGAgTGTITATFGGGGASD-ISGKTLTLTRTANDGSGS 90


                  ..
gi 316983586   80 WF 81
Cdd:pfam00114  91 WT 92
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
2-80 1.59e-11

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 57.03  E-value: 1.59e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 316983586   2 AEGQKSAVTEYYLNHGEWPGNNSSAgVATSANIKGKYVEKVEVKNGVVTATMlstgvNKEIKGKKLSLWAKRQDGSVKW 80
Cdd:COG4969   47 ASPLKTAVEECALENGSLPNCNAGD-NGLPATIATKYVSSVSVDNGVITVTG-----TAALAGLTLTLTPTLNNGAITW 119
 
Name Accession Description Interval E-value
Pilin pfam00114
Pilin (bacterial filament); Proteins with only the short N-terminal methylation site are not ...
 2-81 9.75e-15

Pilin (bacterial filament); Proteins with only the short N-terminal methylation site are not separated from the noise. The Prosite pattern detects those better.


Pssm-ID: 395064  Cd Length: 108  Bit Score: 64.71  E-value: 9.75e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316983586    2 AEGQKSAVTEYYLNHGEWPGNNSS-AGVATSANIKGKYVEKVEVK-NGVVTATMLSTGVNKeIKGKKLSLWAKRQDGSVK 79
Cdd:pfam00114  12 ASGLKTAVAEYALNEGSFPTAAAAdIGLTSSTAILGVISVTVEGAgTGTITATFGGGGASD-ISGKTLTLTRTANDGSGS 90


                  ..
gi 316983586   80 WF 81
Cdd:pfam00114  91 WT 92
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
2-80 1.59e-11

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 57.03  E-value: 1.59e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 316983586   2 AEGQKSAVTEYYLNHGEWPGNNSSAgVATSANIKGKYVEKVEVKNGVVTATMlstgvNKEIKGKKLSLWAKRQDGSVKW 80
Cdd:COG4969   47 ASPLKTAVEECALENGSLPNCNAGD-NGLPATIATKYVSSVSVDNGVITVTG-----TAALAGLTLTLTPTLNNGAITW 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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