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Conserved domains on  [gi|317396147|gb|EFV76866|]
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hypothetical protein HMPREF1013_02890 [Bacillus sp. 2_A_57_CT2]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 11442852)

pentapeptide repeat-containing protein (PRP) adopts a beta-helical structure and may have a targeting or structural function

CATH:  2.160.20.10
PubMed:  33925937|9655353

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
192-257 6.08e-14

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 68.43  E-value: 6.08e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317396147 192 DFIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANLMGSIF----LTQAQVNSA 257
Cdd:COG1357   88 NLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLsgadLSGADLSGA 157
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
192-257 6.08e-14

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 68.43  E-value: 6.08e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317396147 192 DFIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANLMGSIF----LTQAQVNSA 257
Cdd:COG1357   88 NLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLsgadLSGADLSGA 157
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 206-248 7.27e-09

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 50.42  E-value: 7.27e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 317396147  206 ANLRGslfiaADLRKADLRYTDLIGADLRDANLSGANLMGSIF 248
Cdd:pfam00805   1 ANLSG-----ANLSGANLSGANLSGANLTGANLSGADLSGANL 38
PRK15197 PRK15197
type III secretion system effector PipB;
192-260 8.71e-07

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 49.16  E-value: 8.71e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 317396147 192 DFIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANLMGSIF----LTQAQVNSAKGD 260
Cdd:PRK15197 180 DFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILfgsdLTDTKLNGAKLD 252
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
192-257 6.08e-14

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 68.43  E-value: 6.08e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317396147 192 DFIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANLMGSIF----LTQAQVNSA 257
Cdd:COG1357   88 NLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLsgadLSGADLSGA 157
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
192-253 2.27e-13

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 66.50  E-value: 2.27e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 317396147 192 DFIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANLMGSIfLTQAQ 253
Cdd:COG1357  108 NLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGAN-LSGAN 168
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
193-255 6.68e-13

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 65.35  E-value: 6.68e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 317396147 193 FIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANLMGSIFLTQAQVN 255
Cdd:COG1357   31 LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLANLSGAN 93
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
192-258 9.29e-13

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 64.96  E-value: 9.29e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 317396147 192 DFIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANLMGSIfLTQAQVNSAK 258
Cdd:COG1357  103 NLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGAN-LSGANLSGAN 168
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
192-243 5.69e-12

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 62.65  E-value: 5.69e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 317396147 192 DFIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANL 243
Cdd:COG1357  118 DLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGANL 169
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
192-255 1.45e-11

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 61.50  E-value: 1.45e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 317396147 192 DFIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANLMGSIF--LTQAQVN 255
Cdd:COG1357  113 NLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGANLanLEGADLK 178
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
192-257 2.33e-11

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 61.11  E-value: 2.33e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 317396147 192 DFIGARL---SGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANLMGSIF----LTQAQVNSA 257
Cdd:COG1357   80 DLSGANLanlSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLsganLSGADLSGA 152
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
192-244 4.13e-10

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 57.64  E-value: 4.13e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 317396147 192 DFIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANLM 244
Cdd:COG1357   35 NLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLA 87
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
192-246 1.59e-09

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 55.72  E-value: 1.59e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 317396147 192 DFIGARLSGEVLCGANLRGSL---------FIAADLRKADLRYTDLIGADLRDANLSGANLMGS 246
Cdd:COG1357   11 DLSGADLSGADLSGANLSGALsganlsganLSGANLTGANLSGADLSGADLSGANLSGADLSGA 74
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 206-248 7.27e-09

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 50.42  E-value: 7.27e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 317396147  206 ANLRGslfiaADLRKADLRYTDLIGADLRDANLSGANLMGSIF 248
Cdd:pfam00805   1 ANLSG-----ANLSGANLSGANLSGANLTGANLSGADLSGANL 38
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 205-240 1.26e-08

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 49.65  E-value: 1.26e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 317396147  205 GANLRGSLFIAADLRKADLRYTDLIGADLRDANLSG 240
Cdd:pfam00805   5 GANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15197 PRK15197
type III secretion system effector PipB;
192-260 8.71e-07

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 49.16  E-value: 8.71e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 317396147 192 DFIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANLMGSIF----LTQAQVNSAKGD 260
Cdd:PRK15197 180 DFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILfgsdLTDTKLNGAKLD 252
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
198-258 3.26e-06

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 46.47  E-value: 3.26e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 317396147 198 LSGEVLCGANLRGSLFIAADLRKADLR--------------YTDLIGADLRDANLSGANLMGSIfLTQAQVNSAK 258
Cdd:COG1357    2 LSGADLSGADLSGADLSGADLSGANLSgalsganlsganlsGANLTGANLSGADLSGADLSGAN-LSGADLSGAN 75
PRK15196 PRK15196
type III secretion system effector PipB2;
190-243 2.25e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 45.00  E-value: 2.25e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 317396147 190 RRDFIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANL 243
Cdd:PRK15196 266 RADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCF 319
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 192-235 2.32e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 40.79  E-value: 2.32e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 317396147  192 DFIGARLSGEVLCGANLRGSLFIAADLRKADLRytdliGADLRD 235
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGADLS-----GANLSG 40
PRK15196 PRK15196
type III secretion system effector PipB2;
166-248 5.54e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 43.84  E-value: 5.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317396147 166 LLKASELVRKNSGLNQKSAKkysgrrdFIGARLSGEVLCGANLRGslfiaADLRKADLRYTDLIGADLRDANLSGANLMG 245
Cdd:PRK15196 139 LPQDSVILTAQGGMNLKGAV-------LTGANLTAENLCDADLSG-----ANLEGAVLFMADCEGANFKGANLSGTSLGD 206


                 ...
gi 317396147 246 SIF 248
Cdd:PRK15196 207 SNF 209
PRK15197 PRK15197
type III secretion system effector PipB;
189-257 2.46e-04

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 41.84  E-value: 2.46e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 317396147 189 GRRDFIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANLMGSiFLTQAQVNSA 257
Cdd:PRK15197 152 GFLNLRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGS-NMTKANLTHA 219
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
192-253 3.09e-04

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 38.41  E-value: 3.09e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 317396147  192 DFIGARLSGEVLCGANLRGSLFIAADLRKADLRYTDLIGADLRDANLSGANLMGSIF----LTQAQ 253
Cdd:pfam13599  12 KLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFsdvkLKGAD 77
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
217-246 8.79e-04

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 39.15  E-value: 8.79e-04
                         10        20        30
                 ....*....|....*....|....*....|
gi 317396147 217 DLRKADLRYTDLIGADLRDANLSGANLMGS 246
Cdd:COG1357    1 DLSGADLSGADLSGADLSGADLSGANLSGA 30
PRK15196 PRK15196
type III secretion system effector PipB2;
195-248 9.03e-04

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 40.37  E-value: 9.03e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 317396147 195 GARLSGEVLCGANLRGSLFIAAD-----LRKADLRYTDLIGADLRDANLSGANLMGSIF 248
Cdd:PRK15196 261 GATLIRADMSGATLQGATIMAAImegavLTRANLRKASFISTNLDGADLAEANLNNTCF 319
PRK15196 PRK15196
type III secretion system effector PipB2;
189-243 1.68e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 39.22  E-value: 1.68e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 317396147 189 GRRDFIGARLSGEVLCGANLRgslfiAADLRKADLRYTDLIGADLRDANLSGANL 243
Cdd:PRK15196 205 GDSNFKNACLEDSIMCGATLD-----HANLTGANLQHASLLGCSMIECNCSGANM 254
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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