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Conserved domains on  [gi|320447284|gb|EFW88047|]
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ribosomal protein S14p/S29e [Streptococcus equinus ATCC 9812]

Protein Classification

30S ribosomal protein S14( domain architecture ID 10012995)

30S ribosomal protein S14 type Z is located in the peptidyl transferase center and involved in assembly of the 30S ribosome subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsN PRK08061
type Z 30S ribosomal protein S14;
1-61 1.19e-35

type Z 30S ribosomal protein S14;


:

Pssm-ID: 181216  Cd Length: 61  Bit Score: 113.81  E-value: 1.19e-35
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 320447284  1 MAKKSMIAKNHRPAKFSTQAYTRCERCGRPHSVYRKFKLCRVCFRELAYKGQIPGVTKASW 61
Cdd:PRK08061  1 MAKKSLIAKAKRKPKFKVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
 
Name Accession Description Interval E-value
rpsN PRK08061
type Z 30S ribosomal protein S14;
1-61 1.19e-35

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 113.81  E-value: 1.19e-35
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 320447284  1 MAKKSMIAKNHRPAKFSTQAYTRCERCGRPHSVYRKFKLCRVCFRELAYKGQIPGVTKASW 61
Cdd:PRK08061  1 MAKKSLIAKAKRKPKFKVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 1-61 9.45e-34

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 108.95  E-value: 9.45e-34
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 320447284  1 MAKKSMIAKNHRPAKfSTQAYTRCERCGRPHSVYRKFKLCRVCFRELAYKGQIPGVTKASW 61
Cdd:COG0199   1 MAKKSMIARNKKRPK-PVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 18-60 2.23e-21

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 77.45  E-value: 2.23e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 320447284  18 TQAYTRCERCGRPHSVYRKFKLCRVCFRELAYKGQIPGVTKAS 60
Cdd:pfam00253 12 TRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKAS 54
 
Name Accession Description Interval E-value
rpsN PRK08061
type Z 30S ribosomal protein S14;
1-61 1.19e-35

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 113.81  E-value: 1.19e-35
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 320447284  1 MAKKSMIAKNHRPAKFSTQAYTRCERCGRPHSVYRKFKLCRVCFRELAYKGQIPGVTKASW 61
Cdd:PRK08061  1 MAKKSLIAKAKRKPKFKVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 1-61 9.45e-34

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 108.95  E-value: 9.45e-34
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 320447284  1 MAKKSMIAKNHRPAKfSTQAYTRCERCGRPHSVYRKFKLCRVCFRELAYKGQIPGVTKASW 61
Cdd:COG0199   1 MAKKSMIARNKKRPK-PVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 18-60 2.23e-21

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 77.45  E-value: 2.23e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 320447284  18 TQAYTRCERCGRPHSVYRKFKLCRVCFRELAYKGQIPGVTKAS 60
Cdd:pfam00253 12 TRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKAS 54
rpsN PRK08881
30S ribosomal protein S14; Reviewed
 1-61 4.41e-21

30S ribosomal protein S14; Reviewed


Pssm-ID: 181574  Cd Length: 101  Bit Score: 78.27  E-value: 4.41e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320447284   1 MAKKSMIAKNHRPAKFSTQAYT----------------------------------------RCERCGRPHSVYRKFKLC 40
Cdd:PRK08881   1 MAKKSMIAREKKRKKLVAKYAAkraelkaiisdpnlsdeeryearlklqklprnssptrlrnRCELTGRPRGYYRKFGLS 80

                         90       100
                 ....*....|....*....|.
gi 320447284  41 RVCFRELAYKGQIPGVTKASW 61
Cdd:PRK08881  81 RIKLRELAHRGEIPGVVKASW 101
rpsN PRK06911
30S ribosomal protein S14; Reviewed
 2-61 3.42e-12

30S ribosomal protein S14; Reviewed


Pssm-ID: 180742 [Multi-domain]  Cd Length: 100  Bit Score: 55.84  E-value: 3.42e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 320447284   2 AKKSMIAKNHRPAKFSTqaytRCERCGRPHSVYRKFKLCRVCFRELAYKGQIPGVTKASW 61
Cdd:PRK06911  45 AKLAKLPVNSNPVRYVT----RCKQCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100
rps14 CHL00074
ribosomal protein S14
 23-61 8.37e-11

ribosomal protein S14


Pssm-ID: 214354  Cd Length: 100  Bit Score: 52.12  E-value: 8.37e-11
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 320447284  23 RCERCGRPHSVYRKFKLCRVCFRELAYKGQIPGVTKASW 61
Cdd:CHL00074  62 RCFLTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSSW 100
rps14P PRK05766
30S ribosomal protein S14P; Reviewed
 12-50 1.26e-04

30S ribosomal protein S14P; Reviewed


Pssm-ID: 235598  Cd Length: 52  Bit Score: 35.25  E-value: 1.26e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 320447284 12 RPAKFSTQAYTRCERCGRPHSVYRKF--KLCRVCFRELAYK 50
Cdd:PRK05766  5 PKKRKYGKGARECQRCGRKQGLIRKYglYLCRQCFREVAPK 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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