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Conserved domains on  [gi|327549386|gb|EGF33953|]
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PilW [Oxalobacteraceae bacterium IMCC9480]

Protein Classification

PilW family protein( domain architecture ID 11471937)

PilW family protein similar to type IV pilus assembly protein PilW

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PilW COG4966
Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];
3-163 4.38e-18

Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];


:

Pssm-ID: 443992 [Multi-domain]  Cd Length: 158  Bit Score: 79.07  E-value: 4.38e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327549386   3 RRLAGGFGLIEVMISIAISLIVILAVTGLYLTQKSAYTTQGALSVVQENARYLMRTMTHDLRLSGYRDVNASttfTTNPA 82
Cdd:COG4966    1 RRRQRGFTLVELMVALAIGLIVLAAVLQLFLSSRRSYRTQEALARLQENGRFALDLLSRDLRQAGYFGCASG---NGNPN 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327549386  83 GSKLFIDALNDTGTNTSDALTLRFYGASDTSGAADRSIVDCLGNPIGRDTMVTQTYTVQTDPASLEPTLYCTVGANSAPL 162
Cdd:COG4966   78 GGASVDIADDVSVLDVLLDTLGGSGDSTLGASSVTGLGDATDALSLDGVRLLVTLTTSATLNAGLVVSTVLALTLDTAVR 157

                 .
gi 327549386 163 V 163
Cdd:COG4966  158 V 158
 
Name Accession Description Interval E-value
PilW COG4966
Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];
3-163 4.38e-18

Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];


Pssm-ID: 443992 [Multi-domain]  Cd Length: 158  Bit Score: 79.07  E-value: 4.38e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327549386   3 RRLAGGFGLIEVMISIAISLIVILAVTGLYLTQKSAYTTQGALSVVQENARYLMRTMTHDLRLSGYRDVNASttfTTNPA 82
Cdd:COG4966    1 RRRQRGFTLVELMVALAIGLIVLAAVLQLFLSSRRSYRTQEALARLQENGRFALDLLSRDLRQAGYFGCASG---NGNPN 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327549386  83 GSKLFIDALNDTGTNTSDALTLRFYGASDTSGAADRSIVDCLGNPIGRDTMVTQTYTVQTDPASLEPTLYCTVGANSAPL 162
Cdd:COG4966   78 GGASVDIADDVSVLDVLLDTLGGSGDSTLGASSVTGLGDATDALSLDGVRLLVTLTTSATLNAGLVVSTVLALTLDTAVR 157

                 .
gi 327549386 163 V 163
Cdd:COG4966  158 V 158
PilW pfam16074
Type IV Pilus-assembly protein W; PilW is a family of putative type IV pilus-assembly proteins. ...
137-189 2.80e-05

Type IV Pilus-assembly protein W; PilW is a family of putative type IV pilus-assembly proteins. PilW is one of the component proteins of the pilus biogenesis process whereby pilus fibres are assembled in the periplasm, emerge onto the cell surface and are there stabilized, to allow bacterial attachment to host cells. PilW is an outer-membrane protein necessary for both the functionality of fibres and their stabilization.


Pssm-ID: 435119  Cd Length: 126  Bit Score: 42.69  E-value: 2.80e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 327549386  137 TYTVQTDPASlEPTLYCTV-------GANSAPLVTGVDSLQLLYVVDLDGGGTQFSYQPA 189
Cdd:pfam16074   1 VYYIGTGSGG-IPALMRARlnrgsggSVTAQPLVEGVEDMQVLYGVDTDGDGTPDRYVTA 59
PRK10557 PRK10557
prepilin peptidase-dependent protein;
8-68 3.73e-03

prepilin peptidase-dependent protein;


Pssm-ID: 236714  Cd Length: 192  Bit Score: 37.65  E-value: 3.73e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 327549386   8 GFGLIEVMISIAISLIVILAVTGLY--LTQKSAYTTQgALSVVQEnARYLMRTMTHDLRLSGY 68
Cdd:PRK10557   8 GFSLLEVLLAMAIGSVLLLGAARFLpaLQRQILTLTR-QLRLEDE-IWQRVFTVEKDLRRAGY 68
 
Name Accession Description Interval E-value
PilW COG4966
Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];
3-163 4.38e-18

Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];


Pssm-ID: 443992 [Multi-domain]  Cd Length: 158  Bit Score: 79.07  E-value: 4.38e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327549386   3 RRLAGGFGLIEVMISIAISLIVILAVTGLYLTQKSAYTTQGALSVVQENARYLMRTMTHDLRLSGYRDVNASttfTTNPA 82
Cdd:COG4966    1 RRRQRGFTLVELMVALAIGLIVLAAVLQLFLSSRRSYRTQEALARLQENGRFALDLLSRDLRQAGYFGCASG---NGNPN 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327549386  83 GSKLFIDALNDTGTNTSDALTLRFYGASDTSGAADRSIVDCLGNPIGRDTMVTQTYTVQTDPASLEPTLYCTVGANSAPL 162
Cdd:COG4966   78 GGASVDIADDVSVLDVLLDTLGGSGDSTLGASSVTGLGDATDALSLDGVRLLVTLTTSATLNAGLVVSTVLALTLDTAVR 157

                 .
gi 327549386 163 V 163
Cdd:COG4966  158 V 158
PulJ COG4795
Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and ...
1-106 4.94e-07

Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443823 [Multi-domain]  Cd Length: 118  Bit Score: 47.32  E-value: 4.94e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327549386   1 MTRRLAGGFGLIEVMISIAISLIVILAVTGLYLTQKSAYTTQGALSVVQENARYLMRTMTHDLRLSGYRDVNASTTFTTN 80
Cdd:COG4795    3 RARRRQRGFTLLELLVALAIFALLLLAAYRGLDSVLRSRERLEQQAERLQELQRALALLERDLRQAGPRPDEGGDPEPAL 82
                         90       100
                 ....*....|....*....|....*.
gi 327549386  81 PAGSKLFIDALNDTGTNTSDALTLRF 106
Cdd:COG4795   83 SGGGSCLIDLNRNGWWNPLRSELQRV 108
PilW pfam16074
Type IV Pilus-assembly protein W; PilW is a family of putative type IV pilus-assembly proteins. ...
137-189 2.80e-05

Type IV Pilus-assembly protein W; PilW is a family of putative type IV pilus-assembly proteins. PilW is one of the component proteins of the pilus biogenesis process whereby pilus fibres are assembled in the periplasm, emerge onto the cell surface and are there stabilized, to allow bacterial attachment to host cells. PilW is an outer-membrane protein necessary for both the functionality of fibres and their stabilization.


Pssm-ID: 435119  Cd Length: 126  Bit Score: 42.69  E-value: 2.80e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 327549386  137 TYTVQTDPASlEPTLYCTV-------GANSAPLVTGVDSLQLLYVVDLDGGGTQFSYQPA 189
Cdd:pfam16074   1 VYYIGTGSGG-IPALMRARlnrgsggSVTAQPLVEGVEDMQVLYGVDTDGDGTPDRYVTA 59
PilV COG4967
Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];
1-34 1.16e-04

Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];


Pssm-ID: 443993 [Multi-domain]  Cd Length: 86  Bit Score: 39.97  E-value: 1.16e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 327549386   1 MTRRLAGGFGLIEVMISIAISLIVILAVTGLYLT 34
Cdd:COG4967    5 RRRRRQRGFTLIEVLVALVILSIGLLGLAGLQAA 38
N_methyl pfam07963
Prokaryotic N-terminal methylation motif; This short motif directs methylation of the ...
3-29 4.51e-04

Prokaryotic N-terminal methylation motif; This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N-terminus of pilins and other proteins involved in secretion, see pfam00114, pfam05946, pfam02501 and pfam07596.


Pssm-ID: 429756 [Multi-domain]  Cd Length: 27  Bit Score: 36.58  E-value: 4.51e-04
                          10        20
                  ....*....|....*....|....*..
gi 327549386    3 RRLAGGFGLIEVMISIAISLIVILAVT 29
Cdd:pfam07963   1 MRKQRGFTLIELLVALAILAILLAAAL 27
PRK10557 PRK10557
prepilin peptidase-dependent protein;
8-68 3.73e-03

prepilin peptidase-dependent protein;


Pssm-ID: 236714  Cd Length: 192  Bit Score: 37.65  E-value: 3.73e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 327549386   8 GFGLIEVMISIAISLIVILAVTGLY--LTQKSAYTTQgALSVVQEnARYLMRTMTHDLRLSGY 68
Cdd:PRK10557   8 GFSLLEVLLAMAIGSVLLLGAARFLpaLQRQILTLTR-QLRLEDE-IWQRVFTVEKDLRRAGY 68
PulG COG2165
Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, ...
1-59 6.91e-03

Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 441768 [Multi-domain]  Cd Length: 99  Bit Score: 35.27  E-value: 6.91e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 327549386   1 MTRRLAGGFGLIEVMISIAIslIVILAVTGLYLTQKSayTTQGALSVVQENARYLMRTM 59
Cdd:COG2165    5 RRRRRQRGFTLIELLVVIAI--IGILAALALPALQGA--RERARRAELRSNLRQIQQAL 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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