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Conserved domains on  [gi|332350376|gb|EGJ29979|]
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serine hydroxymethyltransferase [Moorena producens 3L]

Protein Classification

serine hydroxymethyltransferase( domain architecture ID 10011056)

serine hydroxymethyltransferase catalyzes the reversible, simultaneous conversions of L-serine to glycine (retro-aldol cleavage) and tetrahydrofolate to 5,10-methylenetetrahydrofolate (hydrolysis)

EC:  2.1.2.1
Gene Symbol:  glyA
PubMed:  12686103|2201683
SCOP:  4000675

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
glyA PRK00011
serine hydroxymethyltransferase; Reviewed
4-419 0e+00

serine hydroxymethyltransferase; Reviewed


:

Pssm-ID: 234571  Cd Length: 416  Bit Score: 805.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376   4 TNLDFLAETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAIDRA 83
Cdd:PRK00011   1 FFMDNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  84 KELFGAAHANVQPHSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHGSPVNVSGKWFEVCHYGVSQETEQLDYGQIREL 163
Cdd:PRK00011  81 KELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 164 ALKERPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTHKTLRGPRGGLILT 243
Cdd:PRK00011 161 ALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILT 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 244 NQSDLGKKFDKAVFPGTQGGPLEHVIAGKAVAFGEALTPAFKTYSAQVIENAKALATALQNRELKIVSGGTDNHVLLVDL 323
Cdd:PRK00011 241 NDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVVSGGTDNHLVLVDL 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 324 RSIGMTGKRADQLVSGVKITANKNTVPFDPESPFVTSGLRLGSPAMTTRGMGVAEFTEIGNIIADRLLNREDEQVATQCR 403
Cdd:PRK00011 321 RSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDNPDDEAVIEEVK 400
                        410
                 ....*....|....*.
gi 332350376 404 QRVAQLCDRFPLYPHL 419
Cdd:PRK00011 401 EEVKELCKRFPLYKYL 416
 
Name Accession Description Interval E-value
glyA PRK00011
serine hydroxymethyltransferase; Reviewed
4-419 0e+00

serine hydroxymethyltransferase; Reviewed


Pssm-ID: 234571  Cd Length: 416  Bit Score: 805.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376   4 TNLDFLAETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAIDRA 83
Cdd:PRK00011   1 FFMDNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  84 KELFGAAHANVQPHSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHGSPVNVSGKWFEVCHYGVSQETEQLDYGQIREL 163
Cdd:PRK00011  81 KELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 164 ALKERPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTHKTLRGPRGGLILT 243
Cdd:PRK00011 161 ALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILT 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 244 NQSDLGKKFDKAVFPGTQGGPLEHVIAGKAVAFGEALTPAFKTYSAQVIENAKALATALQNRELKIVSGGTDNHVLLVDL 323
Cdd:PRK00011 241 NDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVVSGGTDNHLVLVDL 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 324 RSIGMTGKRADQLVSGVKITANKNTVPFDPESPFVTSGLRLGSPAMTTRGMGVAEFTEIGNIIADRLLNREDEQVATQCR 403
Cdd:PRK00011 321 RSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDNPDDEAVIEEVK 400
                        410
                 ....*....|....*.
gi 332350376 404 QRVAQLCDRFPLYPHL 419
Cdd:PRK00011 401 EEVKELCKRFPLYKYL 416
GlyA COG0112
Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]; Glycine/serine ...
6-419 0e+00

Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]; Glycine/serine hydroxymethyltransferase is part of the Pathway/BioSystem: Serine biosynthesis


Pssm-ID: 439882  Cd Length: 414  Bit Score: 785.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376   6 LDFLAETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAIDRAKE 85
Cdd:COG0112    2 LSSLAEVDPEIAEAIEKELERQEEGIELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCEYVDEVEQLAIERAKE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  86 LFGAAHANVQPHSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHGSPVNVSGKWFEVCHYGVSQETEQLDYGQIRELAL 165
Cdd:COG0112   82 LFGAEHANVQPHSGSQANLAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKGYNVVSYGVDPETGLIDYDEVRKLAL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 166 KERPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTHKTLRGPRGGLILTNQ 245
Cdd:COG0112  162 EHKPKLIIAGASAYPRPIDFARFREIADEVGAYLMVDMAHIAGLVAGGLHPSPVPGADVVTTTTHKTLRGPRGGLILCNE 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 246 sDLGKKFDKAVFPGTQGGPLEHVIAGKAVAFGEALTPAFKTYSAQVIENAKALATALQNRELKIVSGGTDNHVLLVDLRS 325
Cdd:COG0112  242 -ELAKKIDSAVFPGLQGGPLMHVIAAKAVAFKEALTPEFKEYAKQVVKNAKALAEALAERGFRVVSGGTDNHLVLVDLRS 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 326 IGMTGKRADQLVSGVKITANKNTVPFDPESPFVTSGLRLGSPAMTTRGMGVAEFTEIGNIIADRLLNREDEQVATQCRQR 405
Cdd:COG0112  321 KGLTGKEAEKALERAGITVNKNAIPFDPRSPFVTSGIRIGTPAVTTRGMKEAEMEEIAELIADVLDNPEDEAVLAEVREE 400
                        410
                 ....*....|....
gi 332350376 406 VAQLCDRFPLYPHL 419
Cdd:COG0112  401 VKELCKRFPLYPDL 414
SHMT cd00378
Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate ...
10-409 0e+00

Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.


Pssm-ID: 99733  Cd Length: 402  Bit Score: 648.88  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  10 AETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAIDRAKELFGA 89
Cdd:cd00378    1 ADVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  90 AHANVQPHSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHGSP--VNVSGKWFEVCHYGVSQETEQLDYGQIRELALKE 167
Cdd:cd00378   81 EYANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFtkVSASGKLFESVPYGVDPETGLIDYDALEKMALEF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 168 RPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTHKTLRGPRGGLILTNQSD 247
Cdd:cd00378  161 KPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTRKGE 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 248 LGKKFDKAVFPGTQGGPLEHVIAGKAVAFGEALTPAFKTYSAQVIENAKALATALQNRELKIVSGGTDNHVLLVDLRSIG 327
Cdd:cd00378  241 LAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGGTDNHLVLVDLRPKG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 328 MTGKRADQLVSGVKITANKNTVPFDPESPFVTSGLRLGSPAMTTRGMGVAEFTEIGNIIADRLLNREDEQVATQCRQRVA 407
Cdd:cd00378  321 ITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAEDVAVAEEVRKEVA 400

                 ..
gi 332350376 408 QL 409
Cdd:cd00378  401 EL 402
SHMT pfam00464
Serine hydroxymethyltransferase;
9-386 0e+00

Serine hydroxymethyltransferase;


Pssm-ID: 395372  Cd Length: 399  Bit Score: 599.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376    9 LAETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAIDRAKELFG 88
Cdd:pfam00464   1 LEDSDPEVFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYSEGYPGKRYYGGCEHVDEIETLCQDRALEAFG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376   89 A----AHANVQPHSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHGSPVNV-----SGKWFEVCHYGVSQETEQLDYGQ 159
Cdd:pfam00464  81 LdpakWGVNVQPLSGSPANLAVYTALLEPGDRIMGLDLPHGGHLTHGYPVNSkkisaSSKFFESMPYGVDPETGYIDYDQ 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  160 IRELALKERPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTHKTLRGPRGG 239
Cdd:pfam00464 161 LEKNAKLFRPKLIVAGTSAYSRLIDYARFREIADEVGAYLMVDMAHISGLVAAGVIPSPFPYADVVTTTTHKTLRGPRGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  240 LILTNQS-------------DLGKKFDKAVFPGTQGGPLEHVIAGKAVAFGEALTPAFKTYSAQVIENAKALATALQNRE 306
Cdd:pfam00464 241 MIFYRKGvksvdktgkeilyELEKKINSAVFPGLQGGPHNHVIAAKAVALKQALTPEFKEYQQQVVKNAKALAEALTERG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  307 LKIVSGGTDNHVLLVDLRSIGMTGKRADQLVSGVKITANKNTVPFDpESPFVTSGLRLGSPAMTTRGMGVAEFTEIGNII 386
Cdd:pfam00464 321 YKLVSGGTDNHLVLVDLRPKGLDGARAEKVLEAANITANKNTIPGD-KSAFVPSGLRLGTPALTSRGFGEADFEKVAGFI 399
 
Name Accession Description Interval E-value
glyA PRK00011
serine hydroxymethyltransferase; Reviewed
4-419 0e+00

serine hydroxymethyltransferase; Reviewed


Pssm-ID: 234571  Cd Length: 416  Bit Score: 805.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376   4 TNLDFLAETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAIDRA 83
Cdd:PRK00011   1 FFMDNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  84 KELFGAAHANVQPHSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHGSPVNVSGKWFEVCHYGVSQETEQLDYGQIREL 163
Cdd:PRK00011  81 KELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 164 ALKERPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTHKTLRGPRGGLILT 243
Cdd:PRK00011 161 ALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILT 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 244 NQSDLGKKFDKAVFPGTQGGPLEHVIAGKAVAFGEALTPAFKTYSAQVIENAKALATALQNRELKIVSGGTDNHVLLVDL 323
Cdd:PRK00011 241 NDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVVSGGTDNHLVLVDL 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 324 RSIGMTGKRADQLVSGVKITANKNTVPFDPESPFVTSGLRLGSPAMTTRGMGVAEFTEIGNIIADRLLNREDEQVATQCR 403
Cdd:PRK00011 321 RSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDNPDDEAVIEEVK 400
                        410
                 ....*....|....*.
gi 332350376 404 QRVAQLCDRFPLYPHL 419
Cdd:PRK00011 401 EEVKELCKRFPLYKYL 416
GlyA COG0112
Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]; Glycine/serine ...
6-419 0e+00

Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]; Glycine/serine hydroxymethyltransferase is part of the Pathway/BioSystem: Serine biosynthesis


Pssm-ID: 439882  Cd Length: 414  Bit Score: 785.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376   6 LDFLAETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAIDRAKE 85
Cdd:COG0112    2 LSSLAEVDPEIAEAIEKELERQEEGIELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCEYVDEVEQLAIERAKE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  86 LFGAAHANVQPHSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHGSPVNVSGKWFEVCHYGVSQETEQLDYGQIRELAL 165
Cdd:COG0112   82 LFGAEHANVQPHSGSQANLAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKGYNVVSYGVDPETGLIDYDEVRKLAL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 166 KERPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTHKTLRGPRGGLILTNQ 245
Cdd:COG0112  162 EHKPKLIIAGASAYPRPIDFARFREIADEVGAYLMVDMAHIAGLVAGGLHPSPVPGADVVTTTTHKTLRGPRGGLILCNE 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 246 sDLGKKFDKAVFPGTQGGPLEHVIAGKAVAFGEALTPAFKTYSAQVIENAKALATALQNRELKIVSGGTDNHVLLVDLRS 325
Cdd:COG0112  242 -ELAKKIDSAVFPGLQGGPLMHVIAAKAVAFKEALTPEFKEYAKQVVKNAKALAEALAERGFRVVSGGTDNHLVLVDLRS 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 326 IGMTGKRADQLVSGVKITANKNTVPFDPESPFVTSGLRLGSPAMTTRGMGVAEFTEIGNIIADRLLNREDEQVATQCRQR 405
Cdd:COG0112  321 KGLTGKEAEKALERAGITVNKNAIPFDPRSPFVTSGIRIGTPAVTTRGMKEAEMEEIAELIADVLDNPEDEAVLAEVREE 400
                        410
                 ....*....|....
gi 332350376 406 VAQLCDRFPLYPHL 419
Cdd:COG0112  401 VKELCKRFPLYPDL 414
PRK13034 PRK13034
serine hydroxymethyltransferase; Reviewed
7-416 0e+00

serine hydroxymethyltransferase; Reviewed


Pssm-ID: 237280  Cd Length: 416  Bit Score: 705.95  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376   7 DFLAETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAIDRAKEL 86
Cdd:PRK13034   7 DSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  87 FGAAHANVQPHSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHGSPVNVSGKWFEVCHYGVSQETEQLDYGQIRELALK 166
Cdd:PRK13034  87 FGCDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKE 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 167 ERPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTHKTLRGPRGGLILTNQS 246
Cdd:PRK13034 167 HKPKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGGMILTNDE 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 247 DLGKKFDKAVFPGTQGGPLEHVIAGKAVAFGEALTPAFKTYSAQVIENAKALATALQNRELKIVSGGTDNHVLLVDLRSI 326
Cdd:PRK13034 247 EIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYDLVSGGTDNHLLLVDLRPK 326
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 327 GMTGKRADQLVSGVKITANKNTVPFDPESPFVTSGLRLGSPAMTTRGMGVAEFTEIGNIIADRLLNREDEQVATQCRQRV 406
Cdd:PRK13034 327 GLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDDLGNAALEQRVRKEV 406
                        410
                 ....*....|
gi 332350376 407 AQLCDRFPLY 416
Cdd:PRK13034 407 KALCSRFPIY 416
SHMT cd00378
Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate ...
10-409 0e+00

Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.


Pssm-ID: 99733  Cd Length: 402  Bit Score: 648.88  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  10 AETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAIDRAKELFGA 89
Cdd:cd00378    1 ADVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  90 AHANVQPHSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHGSP--VNVSGKWFEVCHYGVSQETEQLDYGQIRELALKE 167
Cdd:cd00378   81 EYANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFtkVSASGKLFESVPYGVDPETGLIDYDALEKMALEF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 168 RPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTHKTLRGPRGGLILTNQSD 247
Cdd:cd00378  161 KPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTRKGE 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 248 LGKKFDKAVFPGTQGGPLEHVIAGKAVAFGEALTPAFKTYSAQVIENAKALATALQNRELKIVSGGTDNHVLLVDLRSIG 327
Cdd:cd00378  241 LAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGGTDNHLVLVDLRPKG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 328 MTGKRADQLVSGVKITANKNTVPFDPESPFVTSGLRLGSPAMTTRGMGVAEFTEIGNIIADRLLNREDEQVATQCRQRVA 407
Cdd:cd00378  321 ITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAEDVAVAEEVRKEVA 400

                 ..
gi 332350376 408 QL 409
Cdd:cd00378  401 EL 402
SHMT pfam00464
Serine hydroxymethyltransferase;
9-386 0e+00

Serine hydroxymethyltransferase;


Pssm-ID: 395372  Cd Length: 399  Bit Score: 599.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376    9 LAETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAIDRAKELFG 88
Cdd:pfam00464   1 LEDSDPEVFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYSEGYPGKRYYGGCEHVDEIETLCQDRALEAFG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376   89 A----AHANVQPHSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHGSPVNV-----SGKWFEVCHYGVSQETEQLDYGQ 159
Cdd:pfam00464  81 LdpakWGVNVQPLSGSPANLAVYTALLEPGDRIMGLDLPHGGHLTHGYPVNSkkisaSSKFFESMPYGVDPETGYIDYDQ 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  160 IRELALKERPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTHKTLRGPRGG 239
Cdd:pfam00464 161 LEKNAKLFRPKLIVAGTSAYSRLIDYARFREIADEVGAYLMVDMAHISGLVAAGVIPSPFPYADVVTTTTHKTLRGPRGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  240 LILTNQS-------------DLGKKFDKAVFPGTQGGPLEHVIAGKAVAFGEALTPAFKTYSAQVIENAKALATALQNRE 306
Cdd:pfam00464 241 MIFYRKGvksvdktgkeilyELEKKINSAVFPGLQGGPHNHVIAAKAVALKQALTPEFKEYQQQVVKNAKALAEALTERG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  307 LKIVSGGTDNHVLLVDLRSIGMTGKRADQLVSGVKITANKNTVPFDpESPFVTSGLRLGSPAMTTRGMGVAEFTEIGNII 386
Cdd:pfam00464 321 YKLVSGGTDNHLVLVDLRPKGLDGARAEKVLEAANITANKNTIPGD-KSAFVPSGLRLGTPALTSRGFGEADFEKVAGFI 399
PTZ00094 PTZ00094
serine hydroxymethyltransferase; Provisional
1-386 0e+00

serine hydroxymethyltransferase; Provisional


Pssm-ID: 240264  Cd Length: 452  Bit Score: 511.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376   1 MTQTNLDFLAETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAI 80
Cdd:PTZ00094   7 LVLPLNQSLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQ 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  81 DRAKELFGAAH----ANVQPHSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHG-----SPVNVSGKWFEVCHYGVSQE 151
Cdd:PTZ00094  87 KRALEAFGLDPeewgVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGfytakKKVSATSIYFESLPYQVNEK 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 152 TEqLDYGQIRELALKERPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTHK 231
Cdd:PTZ00094 167 GL-IDYDKLEELAKAFRPKLIIAGASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHK 245
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 232 TLRGPRGGLILTNQ---SDLGKKFDKAVFPGTQGGPLEHVIAGKAVAFGEALTPAFKTYSAQVIENAKALATALQNRELK 308
Cdd:PTZ00094 246 SLRGPRSGLIFYRKkvkPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYD 325
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 332350376 309 IVSGGTDNHVLLVDLRSIGMTGKRADQLVSGVKITANKNTVPFDpESPFVTSGLRLGSPAMTTRGMGVAEFTEIGNII 386
Cdd:PTZ00094 326 LVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGD-KSALNPSGVRLGTPALTTRGAKEKDFKFVADFL 402
PRK13580 PRK13580
glycine hydroxymethyltransferase;
3-422 4.32e-180

glycine hydroxymethyltransferase;


Pssm-ID: 184161  Cd Length: 493  Bit Score: 511.12  E-value: 4.32e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376   3 QTNLDFLAETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAIDR 82
Cdd:PRK13580  24 LAALDVILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEH 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  83 AKELFGAAHANVQPHSGAQANFAVFLALL------------------------------KPGD-KIMGMDLSHGGHLTHG 131
Cdd:PRK13580 104 AKELFGAEHAYVQPHSGADANLVAFWAILahkvespaleklgaktvndlteedwealraELGNqRLLGMSLDSGGHLTHG 183
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 132 SPVNVSGKWFEVCHYGVSQETEQLDYGQIRELALKERPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVA 211
Cdd:PRK13580 184 FRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVA 263
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 212 ----TGHHpNPLPHCHVVTTTTHKTLRGPRGGLILTnQSDLGKKFDKAVfPGTQGGPLEHVIAGKAVAFGEALTPAFKTY 287
Cdd:PRK13580 264 gkvfTGDE-DPVPHADIVTTTTHKTLRGPRGGLVLA-KKEYADAVDKGC-PLVLGGPLPHVMAAKAVALAEARTPEFQKY 340
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 288 SAQVIENAKALATALQNRELKIVSGGTDNHVLLVDLRSIGMTGKRADQLVSGVKITANKNTVPFDPESPFVTSGLRLGSP 367
Cdd:PRK13580 341 AQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTP 420
                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 332350376 368 AMTTRGMGVAEFTEIGNIIADRLLNRE----------------DEQVATQCRQRVAQLCDRFPLYPHLTIP 422
Cdd:PRK13580 421 ALTTLGMGSDEMDEVAELIVKVLSNTTpgttaegapskakyelDEGVAQEVRARVAELLARFPLYPEIDLE 491
PLN03226 PLN03226
serine hydroxymethyltransferase; Provisional
9-386 1.79e-163

serine hydroxymethyltransferase; Provisional


Pssm-ID: 215639  Cd Length: 475  Bit Score: 468.31  E-value: 1.79e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376   9 LAETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAIDRAKELFG 88
Cdd:PLN03226  15 LEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFR 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  89 AAHA----NVQPHSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHG--------SPVNVsgkWFEVCHYGVSQETEQLD 156
Cdd:PLN03226  95 LDPEkwgvNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGyqtdgkkiSATSI---YFESMPYRLDESTGLID 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 157 YGQIRELALKERPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTHKTLRGP 236
Cdd:PLN03226 172 YDKLEKKAMLFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGP 251
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 237 RGGLIL-------------TNQSDLGKKFDKAVFPGTQGGPLEHVIAGKAVAFGEALTPAFKTYSAQVIENAKALATALQ 303
Cdd:PLN03226 252 RGGMIFfrkgpkppkgqgeGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLM 331
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 304 NRELKIVSGGTDNHVLLVDLRSIGMTGKRADQLVSGVKITANKNTVPFDpESPFVTSGLRLGSPAMTTRGMGVAEFTEIG 383
Cdd:PLN03226 332 SKGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGD-SSALVPGGVRIGTPAMTSRGLVEKDFEKVA 410

                 ...
gi 332350376 384 NII 386
Cdd:PLN03226 411 EFL 413
PLN02271 PLN02271
serine hydroxymethyltransferase
9-391 7.87e-124

serine hydroxymethyltransferase


Pssm-ID: 215153  Cd Length: 586  Bit Score: 371.06  E-value: 7.87e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376   9 LAETDPTIATYLGQELQRQREHLELIASENFTSPAVMAAQGSVLTNKYAEGLPGKRYYGGCEFIDKVEQVAIDRAKELFG 88
Cdd:PLN02271 129 LPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFG 208
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  89 AAHA----NVQPHSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHG----SPVNVSGK--WFEVCHYGVSQETEQLDYG 158
Cdd:PLN02271 209 LDSEkwgvNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGyytpGGKKVSGAsiFFESLPYKVNPQTGYIDYD 288
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 159 QIRELALKERPKLIICGYSAYPRIIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTHKTLRGPRG 238
Cdd:PLN02271 289 KLEEKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG 368
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 239 GLIL-------------------TNQSDLGKKFDKAVFPGTQGGPLEHVIAGKAVAFGEALTPAFKTYSAQVIENAKALA 299
Cdd:PLN02271 369 GIIFyrkgpklrkqgmllshgddNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALA 448
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 300 TALQNRELKIVSGGTDNHVLLVDLRSIGMTGKRADQLVSGVKITANKNTVpFDPESPFVTSGLRLGSPAMTTRGMGVAEF 379
Cdd:PLN02271 449 SALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAI-FGDNGTISPGGVRIGTPAMTSRGCLESDF 527
                        410
                 ....*....|..
gi 332350376 380 teigNIIADRLL 391
Cdd:PLN02271 528 ----ETIADFLL 535
AAT_I cd01494
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP) ...
76-244 3.01e-15

Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).


Pssm-ID: 99742 [Multi-domain]  Cd Length: 170  Bit Score: 73.19  E-value: 3.01e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  76 EQVAIDRAKELF--GAAHANVQPhSGAQANFAVFLALLKPGDKIMGMDLSHGGHLTHGspVNVSGkwFEVCHYGVSQETE 153
Cdd:cd01494    2 LEELEEKLARLLqpGNDKAVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRYWVA--AELAG--AKPVPVPVDDAGY 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376 154 QLDYGQI-RELALKERPKLIICGYSAYPR--IIDFEKFRAIADEVGAYLMADMAHIAGLVATGHHPNPLPHCHVVTTTTH 230
Cdd:cd01494   77 GGLDVAIlEELKAKPNVALIVITPNTTSGgvLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLH 156
                        170
                 ....*....|....
gi 332350376 231 KTLRGPRGGLILTN 244
Cdd:cd01494  157 KNLGGEGGGVVIVK 170
Aminotran_1_2 pfam00155
Aminotransferase class I and II;
92-208 1.21e-05

Aminotransferase class I and II;


Pssm-ID: 395103 [Multi-domain]  Cd Length: 351  Bit Score: 46.91  E-value: 1.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376   92 ANVQPHSGAQAN-FAVFLALLKPGDKIMGMDLSHGGHLTHgspVNVSG-KWFEVCHYgvSQETEQLDYGQIRElALKERP 169
Cdd:pfam00155  64 AAVVFGSGAGANiEALIFLLANPGDAILVPAPTYASYIRI---ARLAGgEVVRYPLY--DSNDFHLDFDALEA-ALKEKP 137
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 332350376  170 KLII-------CGySAYPRIiDFEKFRAIADEVGAYLMADMAHIAG 208
Cdd:pfam00155 138 KVVLhtsphnpTG-TVATLE-ELEKLLDLAKEHNILLLVDEAYAGF 181
CGS_like cd00614
CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed ...
85-202 1.64e-05

CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.


Pssm-ID: 99738 [Multi-domain]  Cd Length: 369  Bit Score: 46.81  E-value: 1.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  85 ELFGAAHANVQPhSGAQANFAVFLALLKPGDKI-MGMDLSHGGH--LTHGSPvnvsgkwfevcHYGVSQE-TEQLDYGQI 160
Cdd:cd00614   51 ALEGGEAALAFS-SGMAAISTVLLALLKAGDHVvASDDLYGGTYrlFERLLP-----------KLGIEVTfVDPDDPEAL 118
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 332350376 161 RElALKERPKLIicgYSAYP-----RIIDFEKFRAIADEVGAYLMAD 202
Cdd:cd00614  119 EA-AIKPETKLV---YVESPtnptlKVVDIEAIAELAHEHGALLVVD 161
AAT_like cd00609
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
98-220 1.22e-04

Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.


Pssm-ID: 99734 [Multi-domain]  Cd Length: 350  Bit Score: 43.87  E-value: 1.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332350376  98 SGA-QANFAVFLALLKPGDKIMGMDLSHGGHLTHgspVNVSGkwFEVCHYGVSQETEQLDYGQIRELALKERPKLIICGY 176
Cdd:cd00609   66 NGAqEALSLLLRALLNPGDEVLVPDPTYPGYEAA---ARLAG--AEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNN 140
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 332350376 177 SAYP--RIIDFEKFRAIAD---EVGAYLMADMAHiAGLVATGHHPNPLP 220
Cdd:cd00609  141 PNNPtgAVLSEEELEELAElakKHGILIISDEAY-AELVYDGEPPPALA 188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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