NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|340500155|gb|EGR27052|]
View 

hypothetical protein IMG5_202330 [Ichthyophthirius multifiliis]

Protein Classification

TLD domain-containing protein( domain architecture ID 10540210)

TLD domain-containing protein similar to fungal restriction of telomere capping protein 5 (RTC5) and oxidation resistance protein 1 (OXR1) that may be involved in a process influencing telomere capping and in protection from oxidative damage, respectively

PubMed:  26668325|28707022

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TLD pfam07534
TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It ...
 208-298 1.67e-14

TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It's structure consists of a beta-sandwich surrounded by two helices and two one-turn helices.


:

Pssm-ID: 429519  Cd Length: 139  Bit Score: 69.17  E-value: 1.67e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340500155  208 KVYYGSNESFVFQIHPKQNVYYSTNVNNNHIYIEDQYFTIGS--DNNAIRIESDL-NGKTFKCDTYGNPPLNNADenkfe 284
Cdd:pfam07534  50 KKFYGDGESFLFSLSPQFDPYKWTGKNNAYFNCTSDGLGFGGgqPKFDLWIDSDLeFGYSRHCETFGNGQLSGSG----- 124

                          90
                  ....*....|....
gi 340500155  285 QQRFNTLDLEVYAL 298
Cdd:pfam07534 125 QERFKIDDVEVWGL 138
 
Name Accession Description Interval E-value
TLD pfam07534
TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It ...
 208-298 1.67e-14

TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It's structure consists of a beta-sandwich surrounded by two helices and two one-turn helices.


Pssm-ID: 429519  Cd Length: 139  Bit Score: 69.17  E-value: 1.67e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340500155  208 KVYYGSNESFVFQIHPKQNVYYSTNVNNNHIYIEDQYFTIGS--DNNAIRIESDL-NGKTFKCDTYGNPPLNNADenkfe 284
Cdd:pfam07534  50 KKFYGDGESFLFSLSPQFDPYKWTGKNNAYFNCTSDGLGFGGgqPKFDLWIDSDLeFGYSRHCETFGNGQLSGSG----- 124

                          90
                  ....*....|....
gi 340500155  285 QQRFNTLDLEVYAL 298
Cdd:pfam07534 125 QERFKIDDVEVWGL 138
TLDc smart00584
domain in TBC and LysM domain containing proteins;
210-298 8.50e-12

domain in TBC and LysM domain containing proteins;


Pssm-ID: 214733  Cd Length: 165  Bit Score: 62.34  E-value: 8.50e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340500155   210 YYGSNESFVFQIHPKQNVYYSTNvNNNHIYIEDQYFTI----GSDNNAIRIESDLN-GKTFKCDTYGNPPLNNadenkfE 284
Cdd:smart00584  78 FYGTGESFLFQLNPKFVVYDWTG-KNKYYYINGTPDSLpiggGGGGFGLWIDEDLNhGSSSHCKTFGNPPLST------K 150

                           90
                   ....*....|....
gi 340500155   285 QQRFNTLDLEVYAL 298
Cdd:smart00584 151 QEDFLILDIEVWGF 164
 
Name Accession Description Interval E-value
TLD pfam07534
TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It ...
 208-298 1.67e-14

TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It's structure consists of a beta-sandwich surrounded by two helices and two one-turn helices.


Pssm-ID: 429519  Cd Length: 139  Bit Score: 69.17  E-value: 1.67e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340500155  208 KVYYGSNESFVFQIHPKQNVYYSTNVNNNHIYIEDQYFTIGS--DNNAIRIESDL-NGKTFKCDTYGNPPLNNADenkfe 284
Cdd:pfam07534  50 KKFYGDGESFLFSLSPQFDPYKWTGKNNAYFNCTSDGLGFGGgqPKFDLWIDSDLeFGYSRHCETFGNGQLSGSG----- 124

                          90
                  ....*....|....
gi 340500155  285 QQRFNTLDLEVYAL 298
Cdd:pfam07534 125 QERFKIDDVEVWGL 138
TLDc smart00584
domain in TBC and LysM domain containing proteins;
210-298 8.50e-12

domain in TBC and LysM domain containing proteins;


Pssm-ID: 214733  Cd Length: 165  Bit Score: 62.34  E-value: 8.50e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340500155   210 YYGSNESFVFQIHPKQNVYYSTNvNNNHIYIEDQYFTI----GSDNNAIRIESDLN-GKTFKCDTYGNPPLNNadenkfE 284
Cdd:smart00584  78 FYGTGESFLFQLNPKFVVYDWTG-KNKYYYINGTPDSLpiggGGGGFGLWIDEDLNhGSSSHCKTFGNPPLST------K 150

                           90
                   ....*....|....
gi 340500155   285 QQRFNTLDLEVYAL 298
Cdd:smart00584 151 QEDFLILDIEVWGF 164
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH