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Conserved domains on  [gi|340506325|gb|EGR32490|]
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hypothetical protein IMG5_081240 [Ichthyophthirius multifiliis]

Protein Classification

bS18 family ribosomal protein( domain architecture ID 10471228)

bS18 (bS18m and bS18c for mitoribosome and chloroplast) family ribosomal protein is a component of the small ribosomal subunit and it is involved in ribosomal assembly.

Gene Symbol:  rpsR
Gene Ontology:  GO:0006412|GO:0003735|GO:0019843
PubMed:  24524803|27023846

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S18 pfam01084
Ribosomal protein S18;
162-213 5.53e-10

Ribosomal protein S18;


:

Pssm-ID: 460054  Cd Length: 52  Bit Score: 54.68  E-value: 5.53e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 340506325  162 NYFDIHWRNTELLSQFLNTSCFIRNKYQNRLTKPQQKKVAKQIKISQQMLLL 213
Cdd:pfam01084   1 KNEYIDYKDVELLSQFITERGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
 
Name Accession Description Interval E-value
Ribosomal_S18 pfam01084
Ribosomal protein S18;
162-213 5.53e-10

Ribosomal protein S18;


Pssm-ID: 460054  Cd Length: 52  Bit Score: 54.68  E-value: 5.53e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 340506325  162 NYFDIHWRNTELLSQFLNTSCFIRNKYQNRLTKPQQKKVAKQIKISQQMLLL 213
Cdd:pfam01084   1 KNEYIDYKDVELLSQFITERGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
rps18 CHL00077
ribosomal protein S18
 166-215 3.44e-04

ribosomal protein S18


Pssm-ID: 177016 [Multi-domain]  Cd Length: 86  Bit Score: 39.18  E-value: 3.44e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 340506325 166 IHWRNTELLSQFLNTSCFIRNKYQNRLTKPQQKKVAKQIKISQQMLLLPF 215
Cdd:CHL00077  28 IDYKNMSLLSRFISEQGKILSRRVTRLTLKQQRLITKAIKQARILSLLPF 77
 
Name Accession Description Interval E-value
Ribosomal_S18 pfam01084
Ribosomal protein S18;
162-213 5.53e-10

Ribosomal protein S18;


Pssm-ID: 460054  Cd Length: 52  Bit Score: 54.68  E-value: 5.53e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 340506325  162 NYFDIHWRNTELLSQFLNTSCFIRNKYQNRLTKPQQKKVAKQIKISQQMLLL 213
Cdd:pfam01084   1 KNEYIDYKDVELLSQFITERGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
rps18 CHL00077
ribosomal protein S18
 166-215 3.44e-04

ribosomal protein S18


Pssm-ID: 177016 [Multi-domain]  Cd Length: 86  Bit Score: 39.18  E-value: 3.44e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 340506325 166 IHWRNTELLSQFLNTSCFIRNKYQNRLTKPQQKKVAKQIKISQQMLLLPF 215
Cdd:CHL00077  28 IDYKNMSLLSRFISEQGKILSRRVTRLTLKQQRLITKAIKQARILSLLPF 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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