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Conserved domains on  [gi|341882691|gb|EGT38626|]
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hypothetical protein CAEBREN_23982 [Caenorhabditis brenneri]

Protein Classification

DUF272 domain-containing protein( domain architecture ID 10505584)

DUF272 domain-containing protein similar to Caenorhabditis elegans protein CELE_F58F9.3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF272 pfam03312
Protein of unknown function (DUF272); This family of proteins is restricted to C.elegans and ...
 205-331 1.35e-61

Protein of unknown function (DUF272); This family of proteins is restricted to C.elegans and has no known function. The protein contains a ubiquitin fold. The GO annotation for the protein indicates that it has a function in nematode larval development.


:

Pssm-ID: 397411  Cd Length: 123  Bit Score: 192.43  E-value: 1.35e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341882691  205 YVWNVDSRTEALFVSKEHDLQQGHFFVGVFKKKPDGRMTCQRYEKPIEQLFEgGLTDKNKIYFTVKIDNYQPAEGNSKYA 284
Cdd:pfam03312   1 FLWILDKHEEGIFKSKKHKLELGHFFEGIFEKKPNGKWECKKYVKPIEKLLE-GIVVNNKIELTVTIENYQPASGNRKYP 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 341882691  285 SAFAKYFGNVLEGDtegTKLSTESNGKMVNIQRRRIGEKDFVWMITE 331
Cdd:pfam03312  80 EAYAKYFGKILDGK---NKLPADCNGKKINIQRRKVGEKDYVWVVTE 123
 
Name Accession Description Interval E-value
DUF272 pfam03312
Protein of unknown function (DUF272); This family of proteins is restricted to C.elegans and ...
 205-331 1.35e-61

Protein of unknown function (DUF272); This family of proteins is restricted to C.elegans and has no known function. The protein contains a ubiquitin fold. The GO annotation for the protein indicates that it has a function in nematode larval development.


Pssm-ID: 397411  Cd Length: 123  Bit Score: 192.43  E-value: 1.35e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341882691  205 YVWNVDSRTEALFVSKEHDLQQGHFFVGVFKKKPDGRMTCQRYEKPIEQLFEgGLTDKNKIYFTVKIDNYQPAEGNSKYA 284
Cdd:pfam03312   1 FLWILDKHEEGIFKSKKHKLELGHFFEGIFEKKPNGKWECKKYVKPIEKLLE-GIVVNNKIELTVTIENYQPASGNRKYP 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 341882691  285 SAFAKYFGNVLEGDtegTKLSTESNGKMVNIQRRRIGEKDFVWMITE 331
Cdd:pfam03312  80 EAYAKYFGKILDGK---NKLPADCNGKKINIQRRKVGEKDYVWVVTE 123
 
Name Accession Description Interval E-value
DUF272 pfam03312
Protein of unknown function (DUF272); This family of proteins is restricted to C.elegans and ...
 205-331 1.35e-61

Protein of unknown function (DUF272); This family of proteins is restricted to C.elegans and has no known function. The protein contains a ubiquitin fold. The GO annotation for the protein indicates that it has a function in nematode larval development.


Pssm-ID: 397411  Cd Length: 123  Bit Score: 192.43  E-value: 1.35e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341882691  205 YVWNVDSRTEALFVSKEHDLQQGHFFVGVFKKKPDGRMTCQRYEKPIEQLFEgGLTDKNKIYFTVKIDNYQPAEGNSKYA 284
Cdd:pfam03312   1 FLWILDKHEEGIFKSKKHKLELGHFFEGIFEKKPNGKWECKKYVKPIEKLLE-GIVVNNKIELTVTIENYQPASGNRKYP 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 341882691  285 SAFAKYFGNVLEGDtegTKLSTESNGKMVNIQRRRIGEKDFVWMITE 331
Cdd:pfam03312  80 EAYAKYFGKILDGK---NKLPADCNGKKINIQRRKVGEKDYVWVVTE 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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