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Conserved domains on  [gi|357560655|gb|EHJ42020|]
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hypothetical protein HMPREF0673_00165 [Leyella stercorea DSM 18206]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4313 super family cl16693
Domain of unknown function (DUF4313); This family of proteins is functionally uncharacterized. ...
 65-160 1.77e-08

Domain of unknown function (DUF4313); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 136 and 171 amino acids in length.


The actual alignment was detected with superfamily member pfam14190:

Pssm-ID: 404963  Cd Length: 103  Bit Score: 49.69  E-value: 1.77e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357560655   65 VPRFYANGWLALLLQSVEDESE-YIVLSVNLE--EMDalglPDRTFIDVNHYP-DAMAFLSANGLATDSGYKRRSGFVEY 140
Cdd:pfam14190   4 VSSYANNGNLYIGLVCWEGGYEpFGDLTVNLPgvSLP----PGCAFIDTNDMSrDILKFIKENELGKVTGRQARSGYCEY 79

                          90       100
                  ....*....|....*....|
gi 357560655  141 PMVMLNLALIYQHFPKTFQE 160
Cdd:pfam14190  80 PEVAFDLERLKELDPKGVAE 99
 
Name Accession Description Interval E-value
DUF4313 pfam14190
Domain of unknown function (DUF4313); This family of proteins is functionally uncharacterized. ...
 65-160 1.77e-08

Domain of unknown function (DUF4313); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 136 and 171 amino acids in length.


Pssm-ID: 404963  Cd Length: 103  Bit Score: 49.69  E-value: 1.77e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357560655   65 VPRFYANGWLALLLQSVEDESE-YIVLSVNLE--EMDalglPDRTFIDVNHYP-DAMAFLSANGLATDSGYKRRSGFVEY 140
Cdd:pfam14190   4 VSSYANNGNLYIGLVCWEGGYEpFGDLTVNLPgvSLP----PGCAFIDTNDMSrDILKFIKENELGKVTGRQARSGYCEY 79

                          90       100
                  ....*....|....*....|
gi 357560655  141 PMVMLNLALIYQHFPKTFQE 160
Cdd:pfam14190  80 PEVAFDLERLKELDPKGVAE 99
 
Name Accession Description Interval E-value
DUF4313 pfam14190
Domain of unknown function (DUF4313); This family of proteins is functionally uncharacterized. ...
 65-160 1.77e-08

Domain of unknown function (DUF4313); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 136 and 171 amino acids in length.


Pssm-ID: 404963  Cd Length: 103  Bit Score: 49.69  E-value: 1.77e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357560655   65 VPRFYANGWLALLLQSVEDESE-YIVLSVNLE--EMDalglPDRTFIDVNHYP-DAMAFLSANGLATDSGYKRRSGFVEY 140
Cdd:pfam14190   4 VSSYANNGNLYIGLVCWEGGYEpFGDLTVNLPgvSLP----PGCAFIDTNDMSrDILKFIKENELGKVTGRQARSGYCEY 79

                          90       100
                  ....*....|....*....|
gi 357560655  141 PMVMLNLALIYQHFPKTFQE 160
Cdd:pfam14190  80 PEVAFDLERLKELDPKGVAE 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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