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single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis PY-88]
Protein Classification
single-stranded-DNA-specific exonuclease RecJ ( domain architecture ID 11485183 )
single-stranded-DNA-specific exonuclease RecJ is a specific 5'-3' exonuclease that plays an important role in DNA repair and recombination
List of domain hits
Name
Accession
Description
Interval
E-value
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
3-577
0e+00
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 1215.69
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 3 LKT QLRRREA ADDSH LPA Q LPPLLRRLYASRGV KD AQELER G VKGLL A WQ K L D GI DAG V T LL QQ AL ADRR RI VI VGDFDA 82
Cdd:PRK11070 1 QQI QLRRREA DETAD LPA D LPPLLRRLYASRGV RS AQELER S VKGLL P WQ Q L S GI EKA V E LL YN AL REGT RI IV VGDFDA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 83 DGATSTAL A VLALRS M G G SN L DYLVPNRFEDGYGLSPEVV E Q VA ARGA E LIVTVDNGISSHAGV DL AHA K GI Q VLVTDHH 162
Cdd:PRK11070 81 DGATSTAL S VLALRS L G C SN V DYLVPNRFEDGYGLSPEVV D Q AH ARGA Q LIVTVDNGISSHAGV AH AHA L GI P VLVTDHH 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 163 LPGETLPAADAIINPNL AG C D F L SKSLAGVGV T FYLMLALRA R LR EC GWF EQ R TL A V PNLAELLDLVALGTVADVVPLDA 242
Cdd:PRK11070 161 LPGETLPAADAIINPNL RD C N F P SKSLAGVGV A FYLMLALRA F LR DQ GWF DE R GI A I PNLAELLDLVALGTVADVVPLDA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 243 NNRILV H QGLSRIRAGKCRPGI R ALLEVANRDA RQ L V A N DLGF S LGPRLNAAGRLDDMS I GVALLL S D D I AQ AR A LA ID L 322
Cdd:PRK11070 241 NNRILV W QGLSRIRAGKCRPGI K ALLEVANRDA QK L A A S DLGF A LGPRLNAAGRLDDMS V GVALLL C D N I GE AR V LA NE L 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 323 D T LNQTR R EIEQGMQVEAL Q LC DQ LER T S SE LPYG I AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG E G L LKGSGRS 402
Cdd:PRK11070 321 D A LNQTR K EIEQGMQVEAL T LC EK LER S S DT LPYG L AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG D G T LKGSGRS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 403 VA GLHMRDALERLDTL N PGLILKFGGHAMAAGLSLEE G KF DE F R QRF AD LV G EW M D A S Q L E GV I WSDGEL NG AE L SLE T A 482
Cdd:PRK11070 401 IQ GLHMRDALERLDTL Y PGLILKFGGHAMAAGLSLEE D KF EL F Q QRF GE LV T EW L D P S L L Q GV V WSDGEL SP AE M SLE V A 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 483 ELLRD G GPWGQ S FPEP T FDG K FR I LQQRLVGERHLK L MVEP LN GGPLLDGIAFNVDTTLWPD S SVREV K LAYKLDINE Y R 562
Cdd:PRK11070 481 ELLRD A GPWGQ M FPEP L FDG R FR L LQQRLVGERHLK V MVEP VG GGPLLDGIAFNVDTTLWPD N SVREV E LAYKLDINE F R 560
570
....*....|....*
gi 391660480 563 GNRS V QL LVQ H L WP Y 577
Cdd:PRK11070 561 GNRS L QL IID H I WP I 575
Name
Accession
Description
Interval
E-value
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
3-577
0e+00
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 1215.69
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 3 LKT QLRRREA ADDSH LPA Q LPPLLRRLYASRGV KD AQELER G VKGLL A WQ K L D GI DAG V T LL QQ AL ADRR RI VI VGDFDA 82
Cdd:PRK11070 1 QQI QLRRREA DETAD LPA D LPPLLRRLYASRGV RS AQELER S VKGLL P WQ Q L S GI EKA V E LL YN AL REGT RI IV VGDFDA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 83 DGATSTAL A VLALRS M G G SN L DYLVPNRFEDGYGLSPEVV E Q VA ARGA E LIVTVDNGISSHAGV DL AHA K GI Q VLVTDHH 162
Cdd:PRK11070 81 DGATSTAL S VLALRS L G C SN V DYLVPNRFEDGYGLSPEVV D Q AH ARGA Q LIVTVDNGISSHAGV AH AHA L GI P VLVTDHH 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 163 LPGETLPAADAIINPNL AG C D F L SKSLAGVGV T FYLMLALRA R LR EC GWF EQ R TL A V PNLAELLDLVALGTVADVVPLDA 242
Cdd:PRK11070 161 LPGETLPAADAIINPNL RD C N F P SKSLAGVGV A FYLMLALRA F LR DQ GWF DE R GI A I PNLAELLDLVALGTVADVVPLDA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 243 NNRILV H QGLSRIRAGKCRPGI R ALLEVANRDA RQ L V A N DLGF S LGPRLNAAGRLDDMS I GVALLL S D D I AQ AR A LA ID L 322
Cdd:PRK11070 241 NNRILV W QGLSRIRAGKCRPGI K ALLEVANRDA QK L A A S DLGF A LGPRLNAAGRLDDMS V GVALLL C D N I GE AR V LA NE L 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 323 D T LNQTR R EIEQGMQVEAL Q LC DQ LER T S SE LPYG I AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG E G L LKGSGRS 402
Cdd:PRK11070 321 D A LNQTR K EIEQGMQVEAL T LC EK LER S S DT LPYG L AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG D G T LKGSGRS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 403 VA GLHMRDALERLDTL N PGLILKFGGHAMAAGLSLEE G KF DE F R QRF AD LV G EW M D A S Q L E GV I WSDGEL NG AE L SLE T A 482
Cdd:PRK11070 401 IQ GLHMRDALERLDTL Y PGLILKFGGHAMAAGLSLEE D KF EL F Q QRF GE LV T EW L D P S L L Q GV V WSDGEL SP AE M SLE V A 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 483 ELLRD G GPWGQ S FPEP T FDG K FR I LQQRLVGERHLK L MVEP LN GGPLLDGIAFNVDTTLWPD S SVREV K LAYKLDINE Y R 562
Cdd:PRK11070 481 ELLRD A GPWGQ M FPEP L FDG R FR L LQQRLVGERHLK V MVEP VG GGPLLDGIAFNVDTTLWPD N SVREV E LAYKLDINE F R 560
570
....*....|....*
gi 391660480 563 GNRS V QL LVQ H L WP Y 577
Cdd:PRK11070 561 GNRS L QL IID H I WP I 575
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
11-558
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 770.81
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 11 E AADDSHLPAQ L P PLL R RL Y A S RG VKDAQ E ---- L ERGV K G L LAWQK L DGI D AG V TL L QQ A LADRRR I V I V GD F D A DGAT 86
Cdd:COG0608 15 E LVEALAKELG L S PLL A RL L A N RG ITTPE E aeaf L DPSL K D L HDPFL L KDM D KA V ER L AE A IENGEK I L I Y GD Y D V DGAT 94
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 87 STAL A V LA LR SM G G s N L DY LV PNRFE D GYGL S PE V VE QV A AR G AE LI V TVD N GISSH AG V DL A HAK GI Q V L VTDHHLPGE 166
Cdd:COG0608 95 STAL L V RF LR AL G A - N V DY YI PNRFE E GYGL N PE A VE RA A EQ G VD LI I TVD C GISSH EE V AY A KEL GI D V I VTDHHLPGE 173
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 167 T LP A ADAI I NP NLAG CD FLS K S LAGVGV T F Y L ML ALR AR LRE cgwfeqrt LAV P N LAELLDLVALGTVADVVPL DAN NRI 246
Cdd:COG0608 174 E LP P ADAI V NP KRPD CD YPF K E LAGVGV A F K L AQ ALR RE LRE -------- RPE P D LAELLDLVALGTVADVVPL TGE NRI 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 247 LV H QGL S R I RA G K c RPG I RALLEVA NR D ARQLV A N D L GF S LGPR L NAAGRL D D M S I GV A LLL S DD IAQ AR A LA ID LD T LN 326
Cdd:COG0608 246 LV K QGL K R L RA T K - RPG L RALLEVA GL D PKEIT A E D I GF A LGPR I NAAGRL G D A S L GV E LLL T DD EEE AR E LA EE LD E LN 324
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 327 QT R R EIE QGMQV EAL QLCDQ L E rt SS E L P YGIAM Y HPE WH Q GV V GI L ASR I KE RF HRP V I AF A PAGE G LL KGS G RS VA G L 406
Cdd:COG0608 325 RE R K EIE AEITE EAL AQIEE L P -- DL E D P KVLVL Y DED WH P GV I GI V ASR L KE KY HRP T I VL A IDED G IA KGS A RS IP G F 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 407 HMR DAL ERLD tlnp G L I LKFGGHAMAAGL S L E E GKFDE FR Q RF ADL V G E WMDASQ LE G V IWS DGEL NGA EL S LE T AE L L R 486
Cdd:COG0608 403 DLY DAL DACS ---- D L L LKFGGHAMAAGL T L K E ENLEA FR E RF NEV V A E QLAEED LE P V LEI DGEL PLS EL T LE L AE E L E 478
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 391660480 487 DGG P W GQ SF PEP T F D G K - F R ILQ QR L VG ER -- HLKL MVE pl N GG PL LD G IAFN VDTT L -- W P DSSV R e V KL AY K LDI 558
Cdd:COG0608 479 QLE P F GQ GN PEP V F L G R n V R VVS QR I VG KD gn HLKL TLR -- D GG RR LD A IAFN AGDK L ee L P NAGK R - V DI AY T LDI 552
recJ
TIGR00644 single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' ...
22-572
0e+00
single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273193 [Multi-domain]
Cd Length: 539
Bit Score: 609.30
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 22 L P P L L RRLY ASRG VK DA Q ELE RGVKGL L AWQ ---- K L DGIDAG V TL L QQ A LADRRR I V I V GD F D A DG A TSTA LA V LA L RS 97
Cdd:TIGR00644 1 L G P I L AQIL ASRG IT DA E ELE NFLNPK L KDL pppf L L LDMEKA V ER L IE A VENNEK I L I Y GD Y D V DG I TSTA IL V EF L EL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 98 M G g SNL DY LV PNRF ED GYG LS PE VVEQVAAR G AE LI V TVDNGI SS H AGVDL A HAK G IQ V L VTDHHL PG E T LP A A D AI I NP 177
Cdd:TIGR00644 81 L G - VKV DY YI PNRF TE GYG PN PE AFRKLHED G VS LI I TVDNGI TA H EEIKY A KEL G LD V I VTDHHL VP E D LP E A A AI V NP 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 178 N LAG C DFLS K S LAGVGV T F Y L ML AL RAR LR E cgwfeqrtl AV P N L A E L LDLVALGT V ADVVPL DAN NR I LV HQ GL SRI R A 257
Cdd:TIGR00644 160 N RPD C NYPQ K E LAGVGV A F K L VQ AL YEE LR K --------- PK P D L E E F LDLVALGT I ADVVPL TGE NR A LV KK GL KVL R K 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 258 G K c RPG IR ALLEVA NR D ARQ L VAN D L GF SL GPR L NAAGRL D D M S I GV A LLL S DD IAQ AR A LA ID LD T LNQ T R RE IEQ GMQ 337
Cdd:TIGR00644 231 Q K - RPG LK ALLEVA GV D KDK L SST D I GF II GPR I NAAGRL G D A S L GV E LLL T DD PKE AR E LA EE LD S LNQ E R KD IEQ TVL 309
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 338 V EAL QLCDQL E RTS S elpy G I AMYHPE WH Q GV V GI L ASR IK E RFHR PV IA FA P - A G E G LL KGSGRS VA G LHMR DAL ERLD 416
Cdd:TIGR00644 310 E EAL AIAEAE E TND S ---- V I VVAKEN WH E GV L GI V ASR LA E EYNK PV LV FA I d E G K G IA KGSGRS IS G IDLY DAL SEAR 385
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 417 TL npg L I LKFGGHAMAAGLSL EEGKFD EFR QRFAD L VGEWMDASQL E GVIWS DGEL NGAELSL E TAEL L RDGG P W GQ SF P 496
Cdd:TIGR00644 386 ES --- L F LKFGGHAMAAGLSL KRENLE EFR EKLNE L FSKSLEKDES E PILEV DGEL PPSDIDF E LIRQ L ESLE P F GQ GN P 462
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 391660480 497 EP T F DG K - F R ILQQR L V G ER HLKL MVEP ln G GPLLDG IAFN VDTT L WPDSSVREVKL A Y KL D INE YR GN RSV QL LVQ 572
Cdd:TIGR00644 463 EP L F VL K d L R VEDIK L L G GN HLKL SLKS -- G EKNIEA IAFN AGEQ L LELNGGEPIDV A G KL K INE WN GN KTP QL IIK 537
DHH
pfam01368 DHH family; It is predicted that this family of proteins all perform a phosphoesterase ...
73-233
7.87e-47
DHH family; It is predicted that this family of proteins all perform a phosphoesterase function. It included the single stranded DNA exonuclease RecJ.
Pssm-ID: 460177 [Multi-domain]
Cd Length: 145
Bit Score: 160.82
E-value: 7.87e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 73 R IVI V G DF -- D A DG AT S TALAVLA L RSMG G SNLD Y LV P N R F E D GYG LS PE VV E QVAAR g AE L IV TVD N GI S S HA G VD LA H 150
Cdd:pfam01368 1 K IVI Y G HY np D G DG IG S ALGLYRY L KELV G PDVE Y YI P D R L E E GYG IN PE AI E ELIDF - DT L LI TVD C GI K S VE G IE LA K 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 151 AK GI Q V L V T DHHLP GET LP A ADAIINP NLAGCD flsksl AGVG V T F Y L M lalrarlrecg WFEQRTLAVPNLA EL L DL VA 230
Cdd:pfam01368 80 EL GI D V I V I DHHLP NDF LP D ADAIINP REPPAS ------ STSE V V F K L L ----------- QYAYGEEGKEIDK EL A DL LL 142
...
gi 391660480 231 LG T 233
Cdd:pfam01368 143 LG I 145
Name
Accession
Description
Interval
E-value
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
3-577
0e+00
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 1215.69
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 3 LKT QLRRREA ADDSH LPA Q LPPLLRRLYASRGV KD AQELER G VKGLL A WQ K L D GI DAG V T LL QQ AL ADRR RI VI VGDFDA 82
Cdd:PRK11070 1 QQI QLRRREA DETAD LPA D LPPLLRRLYASRGV RS AQELER S VKGLL P WQ Q L S GI EKA V E LL YN AL REGT RI IV VGDFDA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 83 DGATSTAL A VLALRS M G G SN L DYLVPNRFEDGYGLSPEVV E Q VA ARGA E LIVTVDNGISSHAGV DL AHA K GI Q VLVTDHH 162
Cdd:PRK11070 81 DGATSTAL S VLALRS L G C SN V DYLVPNRFEDGYGLSPEVV D Q AH ARGA Q LIVTVDNGISSHAGV AH AHA L GI P VLVTDHH 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 163 LPGETLPAADAIINPNL AG C D F L SKSLAGVGV T FYLMLALRA R LR EC GWF EQ R TL A V PNLAELLDLVALGTVADVVPLDA 242
Cdd:PRK11070 161 LPGETLPAADAIINPNL RD C N F P SKSLAGVGV A FYLMLALRA F LR DQ GWF DE R GI A I PNLAELLDLVALGTVADVVPLDA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 243 NNRILV H QGLSRIRAGKCRPGI R ALLEVANRDA RQ L V A N DLGF S LGPRLNAAGRLDDMS I GVALLL S D D I AQ AR A LA ID L 322
Cdd:PRK11070 241 NNRILV W QGLSRIRAGKCRPGI K ALLEVANRDA QK L A A S DLGF A LGPRLNAAGRLDDMS V GVALLL C D N I GE AR V LA NE L 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 323 D T LNQTR R EIEQGMQVEAL Q LC DQ LER T S SE LPYG I AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG E G L LKGSGRS 402
Cdd:PRK11070 321 D A LNQTR K EIEQGMQVEAL T LC EK LER S S DT LPYG L AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG D G T LKGSGRS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 403 VA GLHMRDALERLDTL N PGLILKFGGHAMAAGLSLEE G KF DE F R QRF AD LV G EW M D A S Q L E GV I WSDGEL NG AE L SLE T A 482
Cdd:PRK11070 401 IQ GLHMRDALERLDTL Y PGLILKFGGHAMAAGLSLEE D KF EL F Q QRF GE LV T EW L D P S L L Q GV V WSDGEL SP AE M SLE V A 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 483 ELLRD G GPWGQ S FPEP T FDG K FR I LQQRLVGERHLK L MVEP LN GGPLLDGIAFNVDTTLWPD S SVREV K LAYKLDINE Y R 562
Cdd:PRK11070 481 ELLRD A GPWGQ M FPEP L FDG R FR L LQQRLVGERHLK V MVEP VG GGPLLDGIAFNVDTTLWPD N SVREV E LAYKLDINE F R 560
570
....*....|....*
gi 391660480 563 GNRS V QL LVQ H L WP Y 577
Cdd:PRK11070 561 GNRS L QL IID H I WP I 575
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
11-558
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 770.81
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 11 E AADDSHLPAQ L P PLL R RL Y A S RG VKDAQ E ---- L ERGV K G L LAWQK L DGI D AG V TL L QQ A LADRRR I V I V GD F D A DGAT 86
Cdd:COG0608 15 E LVEALAKELG L S PLL A RL L A N RG ITTPE E aeaf L DPSL K D L HDPFL L KDM D KA V ER L AE A IENGEK I L I Y GD Y D V DGAT 94
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 87 STAL A V LA LR SM G G s N L DY LV PNRFE D GYGL S PE V VE QV A AR G AE LI V TVD N GISSH AG V DL A HAK GI Q V L VTDHHLPGE 166
Cdd:COG0608 95 STAL L V RF LR AL G A - N V DY YI PNRFE E GYGL N PE A VE RA A EQ G VD LI I TVD C GISSH EE V AY A KEL GI D V I VTDHHLPGE 173
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 167 T LP A ADAI I NP NLAG CD FLS K S LAGVGV T F Y L ML ALR AR LRE cgwfeqrt LAV P N LAELLDLVALGTVADVVPL DAN NRI 246
Cdd:COG0608 174 E LP P ADAI V NP KRPD CD YPF K E LAGVGV A F K L AQ ALR RE LRE -------- RPE P D LAELLDLVALGTVADVVPL TGE NRI 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 247 LV H QGL S R I RA G K c RPG I RALLEVA NR D ARQLV A N D L GF S LGPR L NAAGRL D D M S I GV A LLL S DD IAQ AR A LA ID LD T LN 326
Cdd:COG0608 246 LV K QGL K R L RA T K - RPG L RALLEVA GL D PKEIT A E D I GF A LGPR I NAAGRL G D A S L GV E LLL T DD EEE AR E LA EE LD E LN 324
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 327 QT R R EIE QGMQV EAL QLCDQ L E rt SS E L P YGIAM Y HPE WH Q GV V GI L ASR I KE RF HRP V I AF A PAGE G LL KGS G RS VA G L 406
Cdd:COG0608 325 RE R K EIE AEITE EAL AQIEE L P -- DL E D P KVLVL Y DED WH P GV I GI V ASR L KE KY HRP T I VL A IDED G IA KGS A RS IP G F 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 407 HMR DAL ERLD tlnp G L I LKFGGHAMAAGL S L E E GKFDE FR Q RF ADL V G E WMDASQ LE G V IWS DGEL NGA EL S LE T AE L L R 486
Cdd:COG0608 403 DLY DAL DACS ---- D L L LKFGGHAMAAGL T L K E ENLEA FR E RF NEV V A E QLAEED LE P V LEI DGEL PLS EL T LE L AE E L E 478
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 391660480 487 DGG P W GQ SF PEP T F D G K - F R ILQ QR L VG ER -- HLKL MVE pl N GG PL LD G IAFN VDTT L -- W P DSSV R e V KL AY K LDI 558
Cdd:COG0608 479 QLE P F GQ GN PEP V F L G R n V R VVS QR I VG KD gn HLKL TLR -- D GG RR LD A IAFN AGDK L ee L P NAGK R - V DI AY T LDI 552
recJ
TIGR00644 single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' ...
22-572
0e+00
single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273193 [Multi-domain]
Cd Length: 539
Bit Score: 609.30
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 22 L P P L L RRLY ASRG VK DA Q ELE RGVKGL L AWQ ---- K L DGIDAG V TL L QQ A LADRRR I V I V GD F D A DG A TSTA LA V LA L RS 97
Cdd:TIGR00644 1 L G P I L AQIL ASRG IT DA E ELE NFLNPK L KDL pppf L L LDMEKA V ER L IE A VENNEK I L I Y GD Y D V DG I TSTA IL V EF L EL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 98 M G g SNL DY LV PNRF ED GYG LS PE VVEQVAAR G AE LI V TVDNGI SS H AGVDL A HAK G IQ V L VTDHHL PG E T LP A A D AI I NP 177
Cdd:TIGR00644 81 L G - VKV DY YI PNRF TE GYG PN PE AFRKLHED G VS LI I TVDNGI TA H EEIKY A KEL G LD V I VTDHHL VP E D LP E A A AI V NP 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 178 N LAG C DFLS K S LAGVGV T F Y L ML AL RAR LR E cgwfeqrtl AV P N L A E L LDLVALGT V ADVVPL DAN NR I LV HQ GL SRI R A 257
Cdd:TIGR00644 160 N RPD C NYPQ K E LAGVGV A F K L VQ AL YEE LR K --------- PK P D L E E F LDLVALGT I ADVVPL TGE NR A LV KK GL KVL R K 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 258 G K c RPG IR ALLEVA NR D ARQ L VAN D L GF SL GPR L NAAGRL D D M S I GV A LLL S DD IAQ AR A LA ID LD T LNQ T R RE IEQ GMQ 337
Cdd:TIGR00644 231 Q K - RPG LK ALLEVA GV D KDK L SST D I GF II GPR I NAAGRL G D A S L GV E LLL T DD PKE AR E LA EE LD S LNQ E R KD IEQ TVL 309
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 338 V EAL QLCDQL E RTS S elpy G I AMYHPE WH Q GV V GI L ASR IK E RFHR PV IA FA P - A G E G LL KGSGRS VA G LHMR DAL ERLD 416
Cdd:TIGR00644 310 E EAL AIAEAE E TND S ---- V I VVAKEN WH E GV L GI V ASR LA E EYNK PV LV FA I d E G K G IA KGSGRS IS G IDLY DAL SEAR 385
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 417 TL npg L I LKFGGHAMAAGLSL EEGKFD EFR QRFAD L VGEWMDASQL E GVIWS DGEL NGAELSL E TAEL L RDGG P W GQ SF P 496
Cdd:TIGR00644 386 ES --- L F LKFGGHAMAAGLSL KRENLE EFR EKLNE L FSKSLEKDES E PILEV DGEL PPSDIDF E LIRQ L ESLE P F GQ GN P 462
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 391660480 497 EP T F DG K - F R ILQQR L V G ER HLKL MVEP ln G GPLLDG IAFN VDTT L WPDSSVREVKL A Y KL D INE YR GN RSV QL LVQ 572
Cdd:TIGR00644 463 EP L F VL K d L R VEDIK L L G GN HLKL SLKS -- G EKNIEA IAFN AGEQ L LELNGGEPIDV A G KL K INE WN GN KTP QL IIK 537
RecJ
COG4199 ssDNA-specific exonuclease RecJ [Replication, recombination and repair];
65-574
2.92e-49
ssDNA-specific exonuclease RecJ [Replication, recombination and repair];
Pssm-ID: 443353 [Multi-domain]
Cd Length: 774
Bit Score: 182.59
E-value: 2.92e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 65 QQALADRRR I V I VGDF D A D GATS T ALA V LALRSMG G SN LDY LV PNRF ED G Y G LSPEVVEQV AA R GA E LI VT V DNG I SSHA 144
Cdd:COG4199 70 ERIAIIEEA I I I IEGD D D D DGDD T TSV V STTLLLL G AL LDY YI PNRF RF G G G PGEAGPAEA AA G GA G LI II V TVI I AVNG 149
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 145 GVDL A HA KG IQVLVT DHH L P GETL P A ADAI IN P NLAGCDFLSKS LAG V GV TFYLML AL RAR L RE cgwfeqrtlavpnla E 224
Cdd:COG4199 150 VIAA A EE KG LDIIID DHH H P EHEE P L ADAI AP P PPPPPPPPFGE LAG G GV AAAVAA AL LLG L PL --------------- L 214
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 225 LL D L V AL G T V A DVVP L DAN NR I L VHQG L SRIRAGK c RPGIRA LL EV A NRD A RQLVANDL GF SL GP R LNAA G RL DDMSIG V 304
Cdd:COG4199 215 LL L L L AL L T A A ADLV L LLE NR R L LRRL L LLKLLST - ERLGLL LL KA A LLL A SIIEEEEE GF GG GP I LNAA A RL GRAAAA V 293
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 305 ALLL SD D IAQARAL A IDLDTL N QT R R EI EQGMQV EA LQL c DQLERTSSELPYGIAM y HPE W HQ GV VGILASRIKERFHR P 384
Cdd:COG4199 294 ALLL LL D EEEEEEA A ELAEAQ N EE R Q EI VKIIEA EA IEE - EEEAEEKDDNVVVVVA - EGG W NG GV GVVVSVVVVKYRRP P 371
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 385 V I AFAPAG E GLLK G S G R S VAGLHMRDALER L DT L npg L I L KF GG HAM AA GLS L E E g KFDEFRQRFAD L VGEWMDASQLEG 464
Cdd:COG4199 372 L I LLIDDE E KGKA G G G S S SISFFLFLLELS L ER L --- L L L FG GG GGA AA AAL L L E - DVEDLLRLLLE L AALLELLEEDLP 447
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 465 - VIWS D GE L NGA E LSLETA E LLRDGG P W G QSF P E P T F - DGKFR I LQQ R LV G ERHLKLMVEPLN G GP L LD G IA F NVD tt L W 542
Cdd:COG4199 448 p ELID D LL L ISD E IIIIII E EELLLP P G G GPP P P P K F v LLEIA I NKR R IG G ANKHLKKLLTGE G EL L DA G GF F GGG -- L L 525
490 500 510
....*....|....*....|....*....|...
gi 391660480 543 PDS - SVREVKLAYK L D INE YRGN R SV QL LV Q HL 574
Cdd:COG4199 526 EEE l PDTIIVVVGG L S INE WNNR R KP QL MI Q DI 558
DHH
pfam01368 DHH family; It is predicted that this family of proteins all perform a phosphoesterase ...
73-233
7.87e-47
DHH family; It is predicted that this family of proteins all perform a phosphoesterase function. It included the single stranded DNA exonuclease RecJ.
Pssm-ID: 460177 [Multi-domain]
Cd Length: 145
Bit Score: 160.82
E-value: 7.87e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 73 R IVI V G DF -- D A DG AT S TALAVLA L RSMG G SNLD Y LV P N R F E D GYG LS PE VV E QVAAR g AE L IV TVD N GI S S HA G VD LA H 150
Cdd:pfam01368 1 K IVI Y G HY np D G DG IG S ALGLYRY L KELV G PDVE Y YI P D R L E E GYG IN PE AI E ELIDF - DT L LI TVD C GI K S VE G IE LA K 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 151 AK GI Q V L V T DHHLP GET LP A ADAIINP NLAGCD flsksl AGVG V T F Y L M lalrarlrecg WFEQRTLAVPNLA EL L DL VA 230
Cdd:pfam01368 80 EL GI D V I V I DHHLP NDF LP D ADAIINP REPPAS ------ STSE V V F K L L ----------- QYAYGEEGKEIDK EL A DL LL 142
...
gi 391660480 231 LG T 233
Cdd:pfam01368 143 LG I 145
RecJ_OB
pfam17768 RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
469-573
4.79e-29
RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
Pssm-ID: 465495 [Multi-domain]
Cd Length: 107
Bit Score: 111.04
E-value: 4.79e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 469 D G EL NGAELS LE TA E L L RDGG P W GQ SF PEP T F DGKF - R I L QQ R LV G E -- R HLKL MVE pl N GG PL LD G IAFN VDTT L WPDS 545
Cdd:pfam17768 2 D A EL PLSDIT LE LI E E L ERLE P F GQ GN PEP V F ALRN v R V L DV R II G K dg N HLKL TLR -- D GG RS LD A IAFN MGEL L PELA 79
90 100
....*....|....*....|....*...
gi 391660480 546 S VRE V KL AY K L D INE YR G N RS V QL LVQH 573
Cdd:pfam17768 80 S GDK V DI AY T L E INE WN G R RS L QL RIKD 107
DHHA1
pfam02272 DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called ...
322-453
1.38e-24
DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members. This domains is also found in alanyl tRNA synthetase, suggesting that this domain may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.
Pssm-ID: 396724 [Multi-domain]
Cd Length: 139
Bit Score: 99.44
E-value: 1.38e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391660480 322 L DT LN QTRR E I E QGMQV -- EAL Q L CDQL E ----- RTSSELPYGI A MYHPE W HQ G VV GI L A S R I K ERFHR PVI AFAPAGE G 394
Cdd:pfam02272 1 L ES LN EELK E L E KELEE lk EAL A L LKAK E lleka EEINGVKVLV A EVGEG W DA G AL GI A A D R L K KKLGD PVI VLVAKED G 80
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 391660480 395 L - L K G S G RS -- VA G LHMRDA L ERLDT lnp G L ILKF GGH AM AAG LSLEEG K F DE FRQRFADLV 453
Cdd:pfam02272 81 D k V K V S A RS sk DK G VDAGEL L KEVAA --- I L GGGG GGH DL AAG AGIDAE K L DE ALELLEEAI 139
NrnA
COG0618 nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs [Nucleotide transport and ...
385-453
1.13e-03
nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs [Nucleotide transport and metabolism, Signal transduction mechanisms];
Pssm-ID: 440383 [Multi-domain]
Cd Length: 312
Bit Score: 41.33
E-value: 1.13e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 391660480 385 VIA F APAGE G LL K G S G RS VAGLHMRDALERLD tlnp G lilkf GGHA M AAG LSLEEGKFD E FRQRFADLV 453
Cdd:COG0618 253 AVV F GEVED G EI K V S L RS KGRVDVGEIAREFG ---- G ----- GGHA R AAG ATIPGLDLE E VVEKLLEAL 312
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
