NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|391875065|gb|EIT83688|]
View 

hypothetical protein A374_19250 [Fictibacillus macauensis ZFHKF-1]

Protein Classification

YwdI family protein( domain architecture ID 13879352)

YwdI family protein is a DUF5327 domain-containing protein similar to Bacillus subtilis protein YwdI

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF5327 pfam17261
Family of unknown function (DUF5327); This bacterial family of proteins has no known function ...
 1-96 2.08e-23

Family of unknown function (DUF5327); This bacterial family of proteins has no known function and is mostly found in Bacilli.


:

Pssm-ID: 435819  Cd Length: 96  Bit Score: 85.40  E-value: 2.08e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391875065   1 MSISVRHILQLMEKHVTELKQlPEGSPKIKEHAASIKALTDVLLLSDSGSAgemQLPQASISAP----PSFTQAPKSSPV 76
Cdd:pfam17261  1 MNISNETVLNKMEEELQKAKQ-AGNPEKVREHIAAIKALCDLLLEEPEQSQ---PVPSAPVSEPspvqAQVPQAMQQSKT 76

                         90       100
                 ....*....|....*....|
gi 391875065  77 QKPAVPYAEEDGNGDSIFDF 96
Cdd:pfam17261 77 LKEKKLEDEDDANGDSLFDF 96
 
Name Accession Description Interval E-value
DUF5327 pfam17261
Family of unknown function (DUF5327); This bacterial family of proteins has no known function ...
 1-96 2.08e-23

Family of unknown function (DUF5327); This bacterial family of proteins has no known function and is mostly found in Bacilli.


Pssm-ID: 435819  Cd Length: 96  Bit Score: 85.40  E-value: 2.08e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391875065   1 MSISVRHILQLMEKHVTELKQlPEGSPKIKEHAASIKALTDVLLLSDSGSAgemQLPQASISAP----PSFTQAPKSSPV 76
Cdd:pfam17261  1 MNISNETVLNKMEEELQKAKQ-AGNPEKVREHIAAIKALCDLLLEEPEQSQ---PVPSAPVSEPspvqAQVPQAMQQSKT 76

                         90       100
                 ....*....|....*....|
gi 391875065  77 QKPAVPYAEEDGNGDSIFDF 96
Cdd:pfam17261 77 LKEKKLEDEDDANGDSLFDF 96
 
Name Accession Description Interval E-value
DUF5327 pfam17261
Family of unknown function (DUF5327); This bacterial family of proteins has no known function ...
 1-96 2.08e-23

Family of unknown function (DUF5327); This bacterial family of proteins has no known function and is mostly found in Bacilli.


Pssm-ID: 435819  Cd Length: 96  Bit Score: 85.40  E-value: 2.08e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391875065   1 MSISVRHILQLMEKHVTELKQlPEGSPKIKEHAASIKALTDVLLLSDSGSAgemQLPQASISAP----PSFTQAPKSSPV 76
Cdd:pfam17261  1 MNISNETVLNKMEEELQKAKQ-AGNPEKVREHIAAIKALCDLLLEEPEQSQ---PVPSAPVSEPspvqAQVPQAMQQSKT 76

                         90       100
                 ....*....|....*....|
gi 391875065  77 QKPAVPYAEEDGNGDSIFDF 96
Cdd:pfam17261 77 LKEKKLEDEDDANGDSLFDF 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH