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Conserved domains on  [gi|407929826|gb|EKG22634|]
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Galactose oxidase/kelch beta-propeller [Macrophomina phaseolina MS6]

Protein Classification

Kelch repeat-containing protein( domain architecture ID 10620232)

Kelch repeat-containing protein, member of a superfamily of proteins with diverse functions

CATH:  2.120.10.80
Gene Ontology:  GO:0005515
PubMed:  10603472|31442578|24959344
SCOP:  3000448

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Kelch_5 pfam13854
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 275-323 1.13e-04

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


:

Pssm-ID: 433528 [Multi-domain]  Cd Length: 41  Bit Score: 39.47  E-value: 1.13e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 407929826  275 PTPRLDFCVCpgqkaakdNSSYNFYIHGGLDPRTSTLYDDVHVLSIPSF 323
Cdd:pfam13854   1 PVPRYGHCAV--------TVGDYIYLYGGYTGGEGQPSDDVYVLSLPTF 41
 
Name Accession Description Interval E-value
Kelch_5 pfam13854
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 275-323 1.13e-04

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 433528 [Multi-domain]  Cd Length: 41  Bit Score: 39.47  E-value: 1.13e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 407929826  275 PTPRLDFCVCpgqkaakdNSSYNFYIHGGLDPRTSTLYDDVHVLSIPSF 323
Cdd:pfam13854   1 PVPRYGHCAV--------TVGDYIYLYGGYTGGEGQPSDDVYVLSLPTF 41
 
Name Accession Description Interval E-value
Kelch_5 pfam13854
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 275-323 1.13e-04

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 433528 [Multi-domain]  Cd Length: 41  Bit Score: 39.47  E-value: 1.13e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 407929826  275 PTPRLDFCVCpgqkaakdNSSYNFYIHGGLDPRTSTLYDDVHVLSIPSF 323
Cdd:pfam13854   1 PVPRYGHCAV--------TVGDYIYLYGGYTGGEGQPSDDVYVLSLPTF 41
Kelch_3 pfam13415
Galactose oxidase, central domain;
298-345 7.14e-04

Galactose oxidase, central domain;


Pssm-ID: 433188 [Multi-domain]  Cd Length: 49  Bit Score: 37.27  E-value: 7.14e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 407929826  298 FYIHGGLDPRTSTLYDDVHVLSIPSFTWTRVynGTPGAGRFGHTCNSA 345
Cdd:pfam13415   4 LYIFGGLGFDGQTRLNDLYVYDLDTNTWTQI--GDLPPPRSGHSATYI 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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