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Conserved domains on  [gi|435197433|gb|ELN81718|]
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flavoprotein [Salmonella enterica subsp. enterica serovar Enteritidis str. 17927]

Protein Classification

electron transfer flavoprotein-ubiquinone oxidoreductase( domain architecture ID 11428947)

electron transfer flavoprotein-ubiquinone oxidoreductase accepts electrons from ETF and reduces ubiquinone

CATH:  3.30.70.20|3.30.9.90|3.50.50.60
EC:  1.5.5.1
Gene Ontology:  GO:0004174|GO:0022900|GO:0046872|GO:0051539
SCOP:  4000064|4000127

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ETF_QO pfam05187
Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S; Electron-transfer ...
 456-559 1.00e-74

Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S; Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64-kDa monomer.


:

Pssm-ID: 461576 [Multi-domain]  Cd Length: 104  Bit Score: 232.12  E-value: 1.00e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  456 GKLTFDILSSVYLSNTWHDDDQPVHLKISDQNIPISINLDIYGGPEERYCPAGVYEFLQDSETQNMRLQINSQNCIHCKV 535
Cdd:pfam05187   1 GVLTFDRLTSVYLSGTNHEEDQPCHLKLKDPEVPIKVNLPKYAGPEQRYCPAGVYEYVEDEEPGGPRLQINAQNCVHCKT 80

                          90       100
                  ....*....|....*....|....
gi 435197433  536 CDIKDPKQNITWTTPEGGNGPNYT 559
Cdd:pfam05187  81 CDIKDPTQNITWVVPEGGGGPNYP 104
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
24-383 7.36e-65

Dehydrogenase (flavoprotein) [Energy production and conversion];


:

Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 212.91  E-value: 7.36e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  24 AGPAGLSAALKLklqandAGKELSIIVLDKGAEPGSHILSGAVMdPRALNELIPDWQErgAPIKQPVTQDKLLLLtNEKC 103
Cdd:COG0644    1 AGPAGSAAARRL------ARAGLSVLLLEKGSFPGDKICGGGLL-PRALEELEPLGLD--EPLERPVRGARFYSP-GGKS 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 104 INLPdalipdnFRNHGNFIVSLGNLIKWLAGQAETSGVDIYAGFSATEILYDQDTniIGVVTGDmgrhrdgskkegfqsG 183
Cdd:COG0644   71 VELP-------PGRGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDDGR--VVVRTGD---------------G 126

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 184 IEILAKYTIFAEGARGSLAKELIKKFHLDTgkaPQSFSIGIKELWEVPSDQS-HPGLVIHTTGwplDKESFGGGFLYHLN 262
Cdd:COG0644  127 EEIRADYVVDADGARSLLARKLGLKRRSDE---PQDYALAIKEHWELPPLEGvDPGAVEFFFG---EGAPGGYGWVFPLG 200

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 263 DNKIALGLVVGldysnpwlspfqemqrlkthpsirkyidrgkrigygarainnggiASMPDPCLPGGLLIGCNAGTLNAS 342
Cdd:COG0644  201 DGRVSVGIPLG---------------------------------------------GPRPRLVGDGVLLVGDAAGFVDPL 235

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 435197433 343 RIKGIHTAIKSGMIAADAIFNAL-LDNRKNDILTEYQTLLRQ 383
Cdd:COG0644  236 TGEGIHLAMKSGRLAAEAIAEALeGGDFSAEALAEYERRLRE 277
 
Name Accession Description Interval E-value
ETF_QO pfam05187
Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S; Electron-transfer ...
 456-559 1.00e-74

Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S; Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64-kDa monomer.


Pssm-ID: 461576 [Multi-domain]  Cd Length: 104  Bit Score: 232.12  E-value: 1.00e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  456 GKLTFDILSSVYLSNTWHDDDQPVHLKISDQNIPISINLDIYGGPEERYCPAGVYEFLQDSETQNMRLQINSQNCIHCKV 535
Cdd:pfam05187   1 GVLTFDRLTSVYLSGTNHEEDQPCHLKLKDPEVPIKVNLPKYAGPEQRYCPAGVYEYVEDEEPGGPRLQINAQNCVHCKT 80

                          90       100
                  ....*....|....*....|....
gi 435197433  536 CDIKDPKQNITWTTPEGGNGPNYT 559
Cdd:pfam05187  81 CDIKDPTQNITWVVPEGGGGPNYP 104
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
24-383 7.36e-65

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 212.91  E-value: 7.36e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  24 AGPAGLSAALKLklqandAGKELSIIVLDKGAEPGSHILSGAVMdPRALNELIPDWQErgAPIKQPVTQDKLLLLtNEKC 103
Cdd:COG0644    1 AGPAGSAAARRL------ARAGLSVLLLEKGSFPGDKICGGGLL-PRALEELEPLGLD--EPLERPVRGARFYSP-GGKS 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 104 INLPdalipdnFRNHGNFIVSLGNLIKWLAGQAETSGVDIYAGFSATEILYDQDTniIGVVTGDmgrhrdgskkegfqsG 183
Cdd:COG0644   71 VELP-------PGRGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDDGR--VVVRTGD---------------G 126

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 184 IEILAKYTIFAEGARGSLAKELIKKFHLDTgkaPQSFSIGIKELWEVPSDQS-HPGLVIHTTGwplDKESFGGGFLYHLN 262
Cdd:COG0644  127 EEIRADYVVDADGARSLLARKLGLKRRSDE---PQDYALAIKEHWELPPLEGvDPGAVEFFFG---EGAPGGYGWVFPLG 200

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 263 DNKIALGLVVGldysnpwlspfqemqrlkthpsirkyidrgkrigygarainnggiASMPDPCLPGGLLIGCNAGTLNAS 342
Cdd:COG0644  201 DGRVSVGIPLG---------------------------------------------GPRPRLVGDGVLLVGDAAGFVDPL 235

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 435197433 343 RIKGIHTAIKSGMIAADAIFNAL-LDNRKNDILTEYQTLLRQ 383
Cdd:COG0644  236 TGEGIHLAMKSGRLAAEAIAEALeGGDFSAEALAEYERRLRE 277
FixX COG2440
Ferredoxin-like protein FixX [Energy production and conversion];
466-561 4.93e-43

Ferredoxin-like protein FixX [Energy production and conversion];


Pssm-ID: 441981 [Multi-domain]  Cd Length: 87  Bit Score: 148.43  E-value: 4.93e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 466 VYLSNTWHDDDQPvHLKISDQNIPISINLDiygGPEERYCPAGVYEFlqdseTQNMRLQINSQNCIHCKVCDIKDPKQNI 545
Cdd:COG2440    1 LFLNNYNVDEDQP-HIKVKDPDICIARCLA---KPCTRYCPAGVYEI-----VGDGRLQINYENCLECGTCRIKCPTQNI 71

                         90
                 ....*....|....*.
gi 435197433 546 TWTTPEGGNGPNYTGM 561
Cdd:COG2440   72 TWVYPEGGGGVNYRFG 87
PRK10015 PRK10015
oxidoreductase; Provisional
 18-392 1.69e-34

oxidoreductase; Provisional


Pssm-ID: 182194 [Multi-domain]  Cd Length: 429  Bit Score: 135.10  E-value: 1.69e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  18 DVLIVGAGPAGLSAALKLklqandAGKELSIIVLDKGAEPGSHILSGAVMDPRALNELIPDWQERgAPIKQPVTQDKLLL 97
Cdd:PRK10015   7 DAIVVGAGVAGSVAALVM------ARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAAS-APVERKVTREKISF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  98 LTNEKCINLPDALIPDNFRNHGNFIVSLGNLIKWLAGQAETSGVDIYAGFSATEILydqdtniigvvtgdmgrhRDGSKK 177
Cdd:PRK10015  80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALV------------------REGNKV 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 178 EGFQSGIEIL-AKYTIFAEGARGSLAKELikkfHLDTGKAPQSFSIGIKELWEVPSDQ--------SHPGLVIHTTGWPL 248
Cdd:PRK10015 142 TGVQAGDDILeANVVILADGVNSMLGRSL----GMVPASDPHHYAVGVKEVIGLTPEQindrfnitGEEGAAWLFAGSPS 217

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 249 DKeSFGGGFLYhLNDNKIALGLVVGL-DYSNPWLSPFQEMQRLKTHPSIRKYIDRGKRIGYGARAINNGGIASMPDPCLP 327
Cdd:PRK10015 218 DG-LMGGGFLY-TNKDSISLGLVCGLgDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVND 295

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 435197433 328 GGLLIGCNAG-TLNAS-RIKGIHTAIKSGMIAADAIFNAlldNRKNDI----LTEYQTLLRQSWLWQELEN 392
Cdd:PRK10015 296 GVMIVGDAAGfCLNLGfTVRGMDLAIASAQAAATTVIAA---KERADFsassLAQYKRELEQSCVMRDMQH 363
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 18-361 1.44e-11

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 65.42  E-value: 1.44e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433   18 DVLIVGAGPAGLSAALKLKlqanDAGkeLSIIVLDKGAEPGSHILSGAVmDPRALNELIPDwqerGAPIKQPVtQDKLLL 97
Cdd:TIGR02032   2 DVVVVGAGPAGASAAYRLA----DKG--LRVLLLEKKSFPRYKPCGGAL-SPRALEELDLP----GELIVNLV-RGARFF 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433   98 LTNEKCINLPdalIPDNFrnhgNFIVSLGNLIKWLAGQAETSGVDIYAGFSATEILYDQDTNIIGVVTgdmgrhrdgskk 177
Cdd:TIGR02032  70 SPNGDSVEIP---IETEL----AYVIDRDAFDEQLAERAQEAGAELRLGTRVLDVEIHDDRVVVIVRG------------ 130

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  178 egfqSGIEILAKYTIFAEGARGSLAKelikkfHLDTGKAPQSFSIGIKELWEVPSDQSHP---------GLVIHTTGW-- 246
Cdd:TIGR02032 131 ----SEGTVTAKIVIGADGSRSIVAK------KLGLKKEPREYGVAARAEVEMPDEEVDEdfvevyidrGIVPGGYGWvf 200

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  247 PLDKE--SFGGGFLyhlndnkIALGLVVGLDYSNPWLSPFQEMQRLKTHPSIRKYIdrgkRIGYGARAINNGGIasmpdp 324
Cdd:TIGR02032 201 PKGDGtaNVGVGSR-------SAEEGEDPKKYLKDFLARRPELKDAETVEVCGALI----PIGRPDEKLVRGNV------ 263

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 435197433  325 clpggLLIGCNAGTLNASRIKGIHTAIKSGMIAADAI 361
Cdd:TIGR02032 264 -----LLVGDAAGHVNPLTGEGIYYAMRSGDIAAEVV 295
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 18-165 2.29e-06

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 49.70  E-value: 2.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433   18 DVLIVGAGPAGLSAALKLklqandAGKELSIIVLDKGAEPGSH--------ILSGAVMDPRAL--------NELIPDWQE 81
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYEL------ARRGLSVTLLERGDDPGSGasgrnaglIHPGLRYLEPSElarlaleaLDLWEELEE 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433   82 RGAPIKQPVTQDKLLLLTNEKCINLPD---------------------ALIPDN------FRNHGNFIVSLGNLIKWLAG 134
Cdd:pfam01266  75 ELGIDCGFRRCGVLVLARDEEEEALEKllaalrrlgvpaelldaeelrELEPLLpglrggLFYPDGGHVDPARLLRALAR 154

                         170       180       190
                  ....*....|....*....|....*....|.
gi 435197433  135 QAETSGVDIYAGFSATEIlyDQDTNIIGVVT 165
Cdd:pfam01266 155 AAEALGVRIIEGTEVTGI--EEEGGVWGVVT 183
PRK06126 PRK06126
hypothetical protein; Provisional
 12-35 3.24e-03

hypothetical protein; Provisional


Pssm-ID: 235704 [Multi-domain]  Cd Length: 545  Bit Score: 40.36  E-value: 3.24e-03
                         10        20
                 ....*....|....*....|....
gi 435197433  12 RETIECDVLIVGAGPAGLSAALKL 35
Cdd:PRK06126   3 ENTSETPVLIVGGGPVGLALALDL 26
 
Name Accession Description Interval E-value
ETF_QO pfam05187
Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S; Electron-transfer ...
 456-559 1.00e-74

Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S; Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64-kDa monomer.


Pssm-ID: 461576 [Multi-domain]  Cd Length: 104  Bit Score: 232.12  E-value: 1.00e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  456 GKLTFDILSSVYLSNTWHDDDQPVHLKISDQNIPISINLDIYGGPEERYCPAGVYEFLQDSETQNMRLQINSQNCIHCKV 535
Cdd:pfam05187   1 GVLTFDRLTSVYLSGTNHEEDQPCHLKLKDPEVPIKVNLPKYAGPEQRYCPAGVYEYVEDEEPGGPRLQINAQNCVHCKT 80

                          90       100
                  ....*....|....*....|....
gi 435197433  536 CDIKDPKQNITWTTPEGGNGPNYT 559
Cdd:pfam05187  81 CDIKDPTQNITWVVPEGGGGPNYP 104
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
24-383 7.36e-65

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 212.91  E-value: 7.36e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  24 AGPAGLSAALKLklqandAGKELSIIVLDKGAEPGSHILSGAVMdPRALNELIPDWQErgAPIKQPVTQDKLLLLtNEKC 103
Cdd:COG0644    1 AGPAGSAAARRL------ARAGLSVLLLEKGSFPGDKICGGGLL-PRALEELEPLGLD--EPLERPVRGARFYSP-GGKS 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 104 INLPdalipdnFRNHGNFIVSLGNLIKWLAGQAETSGVDIYAGFSATEILYDQDTniIGVVTGDmgrhrdgskkegfqsG 183
Cdd:COG0644   71 VELP-------PGRGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDDGR--VVVRTGD---------------G 126

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 184 IEILAKYTIFAEGARGSLAKELIKKFHLDTgkaPQSFSIGIKELWEVPSDQS-HPGLVIHTTGwplDKESFGGGFLYHLN 262
Cdd:COG0644  127 EEIRADYVVDADGARSLLARKLGLKRRSDE---PQDYALAIKEHWELPPLEGvDPGAVEFFFG---EGAPGGYGWVFPLG 200

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 263 DNKIALGLVVGldysnpwlspfqemqrlkthpsirkyidrgkrigygarainnggiASMPDPCLPGGLLIGCNAGTLNAS 342
Cdd:COG0644  201 DGRVSVGIPLG---------------------------------------------GPRPRLVGDGVLLVGDAAGFVDPL 235

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 435197433 343 RIKGIHTAIKSGMIAADAIFNAL-LDNRKNDILTEYQTLLRQ 383
Cdd:COG0644  236 TGEGIHLAMKSGRLAAEAIAEALeGGDFSAEALAEYERRLRE 277
FixX COG2440
Ferredoxin-like protein FixX [Energy production and conversion];
466-561 4.93e-43

Ferredoxin-like protein FixX [Energy production and conversion];


Pssm-ID: 441981 [Multi-domain]  Cd Length: 87  Bit Score: 148.43  E-value: 4.93e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 466 VYLSNTWHDDDQPvHLKISDQNIPISINLDiygGPEERYCPAGVYEFlqdseTQNMRLQINSQNCIHCKVCDIKDPKQNI 545
Cdd:COG2440    1 LFLNNYNVDEDQP-HIKVKDPDICIARCLA---KPCTRYCPAGVYEI-----VGDGRLQINYENCLECGTCRIKCPTQNI 71

                         90
                 ....*....|....*.
gi 435197433 546 TWTTPEGGNGPNYTGM 561
Cdd:COG2440   72 TWVYPEGGGGVNYRFG 87
PRK10015 PRK10015
oxidoreductase; Provisional
 18-392 1.69e-34

oxidoreductase; Provisional


Pssm-ID: 182194 [Multi-domain]  Cd Length: 429  Bit Score: 135.10  E-value: 1.69e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  18 DVLIVGAGPAGLSAALKLklqandAGKELSIIVLDKGAEPGSHILSGAVMDPRALNELIPDWQERgAPIKQPVTQDKLLL 97
Cdd:PRK10015   7 DAIVVGAGVAGSVAALVM------ARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAAS-APVERKVTREKISF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  98 LTNEKCINLPDALIPDNFRNHGNFIVSLGNLIKWLAGQAETSGVDIYAGFSATEILydqdtniigvvtgdmgrhRDGSKK 177
Cdd:PRK10015  80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALV------------------REGNKV 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 178 EGFQSGIEIL-AKYTIFAEGARGSLAKELikkfHLDTGKAPQSFSIGIKELWEVPSDQ--------SHPGLVIHTTGWPL 248
Cdd:PRK10015 142 TGVQAGDDILeANVVILADGVNSMLGRSL----GMVPASDPHHYAVGVKEVIGLTPEQindrfnitGEEGAAWLFAGSPS 217

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 249 DKeSFGGGFLYhLNDNKIALGLVVGL-DYSNPWLSPFQEMQRLKTHPSIRKYIDRGKRIGYGARAINNGGIASMPDPCLP 327
Cdd:PRK10015 218 DG-LMGGGFLY-TNKDSISLGLVCGLgDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVND 295

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 435197433 328 GGLLIGCNAG-TLNAS-RIKGIHTAIKSGMIAADAIFNAlldNRKNDI----LTEYQTLLRQSWLWQELEN 392
Cdd:PRK10015 296 GVMIVGDAAGfCLNLGfTVRGMDLAIASAQAAATTVIAA---KERADFsassLAQYKRELEQSCVMRDMQH 363
PRK10157 PRK10157
putative oxidoreductase FixC; Provisional
 18-393 6.77e-30

putative oxidoreductase FixC; Provisional


Pssm-ID: 182273 [Multi-domain]  Cd Length: 428  Bit Score: 121.94  E-value: 6.77e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  18 DVLIVGAGPAGLSAALKLklqandAGKELSIIVLDKGAEPGSHILSGAVMDPRALNELIPDWQERgAPIKQPVTQDKLLL 97
Cdd:PRK10157   7 DAIIVGAGLAGSVAALVL------AREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADS-APVERLITHEKLAF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  98 LTNEKCINLPDALIPDNFRNHGNFIVSLGNLIKWLAGQAETSGVDIYAGFSATEILyDQDTNIIGV-VTGDMgrhrdgsk 176
Cdd:PRK10157  80 MTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLV-QRDGKVVGVeADGDV-------- 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 177 kegfqsgieILAKYTIFAEGARGSLAKELikkfHLDTGKAPQSFSIGIKELWEVPSD--------QSHPGLVIHTTGWPL 248
Cdd:PRK10157 151 ---------IEAKTVILADGVNSILAEKL----GMAKRVKPTDVAVGVKELIELPKSviedrfqlQGNQGAACLFAGSPT 217

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433 249 DKeSFGGGFLYhLNDNKIALGLVVGLDYSNPWLSPFQEM-QRLKTHPSIRKYIDRGKRIGYGARAINNGGIASMPDPCLP 327
Cdd:PRK10157 218 DG-LMGGGFLY-TNENTLSLGLVCGLHHLHDAKKSVPQMlEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGD 295

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 435197433 328 GGLLIGCNAGT-LNAS-RIKGIHTAIKSGMIAADAIFNALldnRKNDI----LTEYQtllrqswlwQELENG 393
Cdd:PRK10157 296 GVLIAGDAAGMcMNLGfTIRGMDLAIAAGEAAAKTVLSAM---KSDDFskqkLAEYR---------QHLESG 355
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 18-361 1.44e-11

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 65.42  E-value: 1.44e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433   18 DVLIVGAGPAGLSAALKLKlqanDAGkeLSIIVLDKGAEPGSHILSGAVmDPRALNELIPDwqerGAPIKQPVtQDKLLL 97
Cdd:TIGR02032   2 DVVVVGAGPAGASAAYRLA----DKG--LRVLLLEKKSFPRYKPCGGAL-SPRALEELDLP----GELIVNLV-RGARFF 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433   98 LTNEKCINLPdalIPDNFrnhgNFIVSLGNLIKWLAGQAETSGVDIYAGFSATEILYDQDTNIIGVVTgdmgrhrdgskk 177
Cdd:TIGR02032  70 SPNGDSVEIP---IETEL----AYVIDRDAFDEQLAERAQEAGAELRLGTRVLDVEIHDDRVVVIVRG------------ 130

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  178 egfqSGIEILAKYTIFAEGARGSLAKelikkfHLDTGKAPQSFSIGIKELWEVPSDQSHP---------GLVIHTTGW-- 246
Cdd:TIGR02032 131 ----SEGTVTAKIVIGADGSRSIVAK------KLGLKKEPREYGVAARAEVEMPDEEVDEdfvevyidrGIVPGGYGWvf 200

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  247 PLDKE--SFGGGFLyhlndnkIALGLVVGLDYSNPWLSPFQEMQRLKTHPSIRKYIdrgkRIGYGARAINNGGIasmpdp 324
Cdd:TIGR02032 201 PKGDGtaNVGVGSR-------SAEEGEDPKKYLKDFLARRPELKDAETVEVCGALI----PIGRPDEKLVRGNV------ 263

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 435197433  325 clpggLLIGCNAGTLNASRIKGIHTAIKSGMIAADAI 361
Cdd:TIGR02032 264 -----LLVGDAAGHVNPLTGEGIYYAMRSGDIAAEVV 295
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 14-197 1.38e-09

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 60.23  E-value: 1.38e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  14 TIECDVLIVGAGPAGLSAAlklkLQANDAGkeLSIIVLDKGAEPGSH-ILSGAVM---DPRALNELIPD-WQE------R 82
Cdd:COG1053    1 DHEYDVVVVGSGGAGLRAA----LEAAEAG--LKVLVLEKVPPRGGHtAAAQGGInaaGTNVQKAAGEDsPEEhfydtvK 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  83 GApiKQPVTQDKLLLLTNE--KCIN-----------LPDALIPdNF------RNHGNFIVSlGN-LIKWLAGQAETSGVD 142
Cdd:COG1053   75 GG--DGLADQDLVEALAEEapEAIDwleaqgvpfsrTPDGRLP-QFgghsvgRTCYAGDGT-GHaLLATLYQAALRLGVE 150

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 435197433 143 IYAGFSATEILYDQdtniiGVVTGDMGRHRDGSKKE-----------GFQSGIEILAKYTIFAEGA 197
Cdd:COG1053  151 IFTETEVLDLIVDD-----GRVVGVVARDRTGEIVRirakavvlatgGFGRNYEMRAEYLPEAEGA 211
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 14-205 1.97e-07

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 53.02  E-value: 1.97e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  14 TIECDVLIVGAGPAGLSAALKLKlqanDAGkeLSIIVLDKGAEPG----SHILSGAVMdpRALNEL--IPDWQERGAPIk 87
Cdd:COG0654    1 MMRTDVLIVGGGPAGLALALALA----RAG--IRVTVVERAPPPRpdgrGIALSPRSL--ELLRRLglWDRLLARGAPI- 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  88 qpvtqDKLLLLTNEKCINLPDALIPDNFRNHGnFIVSLGNLIKWLAGQAETSGVDIYAGFSATEIlyDQDTNIIGVVtgd 167
Cdd:COG0654   72 -----RGIRVRDGSDGRVLARFDAAETGLPAG-LVVPRADLERALLEAARALGVELRFGTEVTGL--EQDADGVTVT--- 140

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 435197433 168 mgrhrdgskkegFQSGIEILAKYTIFAEGARGSLAKEL 205
Cdd:COG0654  141 ------------LADGRTLRADLVVGADGARSAVRRLL 166
PRK07333 PRK07333
ubiquinone biosynthesis hydroxylase;
17-216 8.92e-07

ubiquinone biosynthesis hydroxylase;


Pssm-ID: 180935 [Multi-domain]  Cd Length: 403  Bit Score: 51.52  E-value: 8.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  17 CDVLIVGAGPAGLSAALKLKlqanDAGKELSIIVLDKGAEpgsHILSGavmDPRA---------LNELIPDWQERgAPIK 87
Cdd:PRK07333   2 CDVVIAGGGYVGLALAVALK----QAAPHLPVTVVDAAPA---GAWSR---DPRAsaiaaaarrMLEALGVWDEI-APEA 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  88 QPVTQdklLLLTNEKcinLPDALIPDNFRNHGN--------FIVSLGNLIKWLAGQAETSGVDIYAGFSATEilYDQDTN 159
Cdd:PRK07333  71 QPITD---MVITDSR---TSDPVRPVFLTFEGEvepgepfaHMVENRVLINALRKRAEALGIDLREATSVTD--FETRDE 142

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 435197433 160 IIGVVTGDmgrhrdgskkegfqsGIEILAKYTIFAEGARGSLaKEL--IKKFHLDTGKA 216
Cdd:PRK07333 143 GVTVTLSD---------------GSVLEARLLVAADGARSKL-RELagIKTVGWDYGQS 185
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 18-165 2.29e-06

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 49.70  E-value: 2.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433   18 DVLIVGAGPAGLSAALKLklqandAGKELSIIVLDKGAEPGSH--------ILSGAVMDPRAL--------NELIPDWQE 81
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYEL------ARRGLSVTLLERGDDPGSGasgrnaglIHPGLRYLEPSElarlaleaLDLWEELEE 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433   82 RGAPIKQPVTQDKLLLLTNEKCINLPD---------------------ALIPDN------FRNHGNFIVSLGNLIKWLAG 134
Cdd:pfam01266  75 ELGIDCGFRRCGVLVLARDEEEEALEKllaalrrlgvpaelldaeelrELEPLLpglrggLFYPDGGHVDPARLLRALAR 154

                         170       180       190
                  ....*....|....*....|....*....|.
gi 435197433  135 QAETSGVDIYAGFSATEIlyDQDTNIIGVVT 165
Cdd:pfam01266 155 AAEALGVRIIEGTEVTGI--EEEGGVWGVVT 183
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 11-58 2.42e-06

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 49.86  E-value: 2.42e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 435197433  11 SRETIECDVLIVGAGPAGLSAALKLKlqanDAGkeLSIIVLDKGAEPG 58
Cdd:COG2072    1 TAATEHVDVVVIGAGQAGLAAAYHLR----RAG--IDFVVLEKADDVG 42
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
15-205 3.59e-06

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 49.13  E-value: 3.59e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  15 IECDVLIVGAGPAGLSAALKLKlqanDAGkeLSIIVLDKGaEPGSH---------ILSGAVMDPRALNELI--------- 76
Cdd:COG0665    1 ATADVVVIGGGIAGLSTAYHLA----RRG--LDVTVLERG-RPGSGasgrnagqlRPGLAALADRALVRLArealdlwre 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  77 --------PDWQERG-----------APIKQPVTQDKLL-----LLTNEKCINLPDALIPDNF----RNHGNFIVSLGNL 128
Cdd:COG0665   74 laaelgidCDFRRTGvlylarteaelAALRAEAEALRALglpveLLDAAELREREPGLGSPDYagglYDPDDGHVDPAKL 153

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 435197433 129 IKWLAGQAETSGVDIYAGFSATEILYDQDtNIIGVVTGDmGRHRdgskkegfqsgieilAKYTIFAEGAR-GSLAKEL 205
Cdd:COG0665  154 VRALARAARAAGVRIREGTPVTGLEREGG-RVTGVRTER-GTVR---------------ADAVVLAAGAWsARLLPML 214
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 18-68 7.95e-06

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 48.44  E-value: 7.95e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 435197433   18 DVLIVGAGPAGLSAAlklkLQANDAGKelSIIVLDKGAEPGSHI-LSGAVMD 68
Cdd:pfam00890   1 DVLVIGGGLAGLAAA----LAAAEAGL--KVAVVEKGQPFGGATaWSSGGID 46
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
17-58 7.97e-06

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 47.81  E-value: 7.97e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 435197433  17 CDVLIVGAGPAGLSAALKLKLqandAGkeLSIIVLDKGaEPG 58
Cdd:COG0492    1 YDVVIIGAGPAGLTAAIYAAR----AG--LKTLVIEGG-EPG 35
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 16-205 8.20e-06

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 48.09  E-value: 8.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433   16 ECDVLIVGAGPAGLSAALKLKLqandAGKelSIIVLDKGAEPgsHILS-GAVMDPRALnELIpdwqeRGAPIKQPVTQDK 94
Cdd:pfam01494   1 ETDVLIVGGGPAGLMLALLLAR----AGV--RVVLVERHATT--SVLPrAHGLNQRTM-ELL-----RQAGLEDRILAEG 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433   95 LLLLTNEKCINLPDALIPDNFRNHGNFIVSLGN--LIKWLAGQAETSGVDIYAGFSATEILYDQDTniigvVTGDMGRHR 172
Cdd:pfam01494  67 VPHEGMGLAFYNTRRRADLDFLTSPPRVTVYPQteLEPILVEHAEARGAQVRFGTEVLSLEQDGDG-----VTAVVRDRR 141

                         170       180       190
                  ....*....|....*....|....*....|...
gi 435197433  173 DGSKKegfqsgiEILAKYTIFAEGARGSLAKEL 205
Cdd:pfam01494 142 DGEEY-------TVRAKYLVGCDGGRSPVRKTL 167
NadB COG0029
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ...
 13-60 9.19e-06

Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 439800 [Multi-domain]  Cd Length: 521  Bit Score: 48.56  E-value: 9.19e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 435197433  13 ETIECDVLIVGAGPAGLSAALKLKlqandagKELSIIVLDKGAEPGSH 60
Cdd:COG0029    1 ERLKTDVLVIGSGIAGLSAALKLA-------ERGRVTLLTKGELGESN 41
COG2509 COG2509
FAD-dependent dehydrogenase [General function prediction only];
18-54 1.05e-05

FAD-dependent dehydrogenase [General function prediction only];


Pssm-ID: 441999 [Multi-domain]  Cd Length: 466  Bit Score: 48.19  E-value: 1.05e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 435197433  18 DVLIVGAGPAGLSAALKLklqandAGKELSIIVLDKG 54
Cdd:COG2509   32 DVVIVGAGPAGLFAALEL------AEAGLKPLVLERG 62
HI0933_like pfam03486
HI0933-like protein;
17-64 1.48e-05

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 47.58  E-value: 1.48e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 435197433   17 CDVLIVGAGPAGLSAAlklkLQANDAGKelSIIVLDKGAEPGSHIL-SG 64
Cdd:pfam03486   1 FDVIVIGGGAAGLMAA----ISAAKRGR--RVLLIEKGKKLGRKILiSG 43
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
11-51 4.11e-05

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 46.07  E-value: 4.11e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 435197433  11 SRETIECDVLIVGAGPAGLSAALKLKlqanDAGkeLSIIVL 51
Cdd:COG1231    2 SRRARGKDVVIVGAGLAGLAAARELR----KAG--LDVTVL 36
PRK06996 PRK06996
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase;
18-86 9.50e-05

UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase;


Pssm-ID: 235905 [Multi-domain]  Cd Length: 398  Bit Score: 45.06  E-value: 9.50e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 435197433  18 DVLIVGAGPAGLsaALKLKLQANDAGKELSIIVLDkGAEPgshilSGAVMDPRALN---------ELIPDWQERGAPI 86
Cdd:PRK06996  13 DIAIVGAGPVGL--ALAGWLARRSATRALSIALID-AREP-----AASANDPRAIAlshgsrvllETLGAWPADATPI 82
COG3380 COG3380
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
18-58 1.14e-04

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];


Pssm-ID: 442607 [Multi-domain]  Cd Length: 331  Bit Score: 44.48  E-value: 1.14e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 435197433  18 DVLIVGAGPAGLSAALKLKlqanDAGkeLSIIVLDKGAEPG 58
Cdd:COG3380    5 DIAIIGAGIAGLAAARALQ----DAG--HEVTVFEKSRGVG 39
sdhA PRK06069
succinate dehydrogenase/fumarate reductase flavoprotein subunit;
13-69 1.47e-04

succinate dehydrogenase/fumarate reductase flavoprotein subunit;


Pssm-ID: 235689 [Multi-domain]  Cd Length: 577  Bit Score: 44.66  E-value: 1.47e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 435197433  13 ETIECDVLIVGAGPAGLSAALKLKLQANDagkELSIIVLDKGAEPGSHILS-----GAVMDP 69
Cdd:PRK06069   2 EVLKYDVVIVGSGLAGLRAAVAAAERSGG---KLSVAVVSKTQPMRSHSVSaeggtAAVLYP 60
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 17-68 1.58e-04

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 44.44  E-value: 1.58e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 435197433  17 CDVLIVGAGPAGLSAALKLKlqanDAGKElsIIVLDKGAEPG----SHILSGAVMD 68
Cdd:COG1232    2 KRVAVIGGGIAGLTAAYRLA----KAGHE--VTVLEASDRVGglirTVEVDGFRID 51
PRK09126 PRK09126
FAD-dependent hydroxylase;
17-157 2.81e-04

FAD-dependent hydroxylase;


Pssm-ID: 236385 [Multi-domain]  Cd Length: 392  Bit Score: 43.39  E-value: 2.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  17 CDVLIVGAGPAGLSAALKLklqandAGKELSIIVLDKGAEpgsHILSGAVMDPR--ALNELIPDW-QERGApiKQPVTQD 93
Cdd:PRK09126   4 SDIVVVGAGPAGLSFARSL------AGSGLKVTLIERQPL---AALADPAFDGReiALTHASREIlQRLGA--WDRIPED 72

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 435197433  94 KLLLLTNEKCINLPDaLIPDNFRNHGNFIVSLGNL-----IKWLAGQA--ETSGVDIYAGFSATEILYDQD 157
Cdd:PRK09126  73 EISPLRDAKVLNGRS-PFALTFDARGRGADALGYLvpnhlIRRAAYEAvsQQDGIELLTGTRVTAVRTDDD 142
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
13-60 6.90e-04

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 42.06  E-value: 6.90e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 435197433  13 ETIECDVLIVGAGPAGLSAALKLKLQANdagkeLSIIVLDKGAEPGSH 60
Cdd:COG0579    1 MMEMYDVVIIGAGIVGLALARELSRYED-----LKVLVLEKEDDVAQE 43
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
21-66 8.09e-04

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 37.90  E-value: 8.09e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 435197433   21 IVGAGPAGLSAALKLklqandAGKELSIIVLDKGAEPGSHILSGAV 66
Cdd:pfam13450   1 IVGAGLAGLVAAALL------AKRGFRVLVLEKRDRLGGNAYSYRV 40
PRK09077 PRK09077
L-aspartate oxidase; Provisional
 9-55 8.78e-04

L-aspartate oxidase; Provisional


Pssm-ID: 236374 [Multi-domain]  Cd Length: 536  Bit Score: 42.21  E-value: 8.78e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 435197433   9 QQSREtIECDVLIVGAGPAGLSAALKLklqandAGKeLSIIVLDKGA 55
Cdd:PRK09077   2 NTSPE-HQCDVLIIGSGAAGLSLALRL------AEH-RRVAVLSKGP 40
PRK12842 PRK12842
putative succinate dehydrogenase; Reviewed
 14-67 1.03e-03

putative succinate dehydrogenase; Reviewed


Pssm-ID: 237224 [Multi-domain]  Cd Length: 574  Bit Score: 41.99  E-value: 1.03e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 435197433  14 TIECDVLIVGAGPAGLSAALKLKLQAndagkeLSIIVLDKgaEP---GSHILSGAVM 67
Cdd:PRK12842   7 ELTCDVLVIGSGAGGLSAAITARKLG------LDVVVLEK--EPvfgGTTAFSGGVL 55
YdhS COG4529
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
18-59 1.46e-03

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 41.09  E-value: 1.46e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 435197433  18 DVLIVGAGPAGLSAALKLklqANDAGKELSIIVLDKGAEPGS 59
Cdd:COG4529    7 RIAIIGGGASGTALAIHL---LRRAPEPLRITLFEPRPELGR 45
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 19-58 1.63e-03

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 41.40  E-value: 1.63e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 435197433  19 VLIVGAGPAGLSAALKLKLQandaGKELSIIvlDKGAEPG 58
Cdd:PRK12771 140 VAVIGGGPAGLSAAYHLRRM----GHAVTIF--EAGPKLG 173
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 18-58 2.27e-03

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 40.60  E-value: 2.27e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 435197433  18 DVLIVGAGPAGLSAALKLklqandAGKELSIIVLDKGAEPG 58
Cdd:COG1233    5 DVVVIGAGIGGLAAAALL------ARAGYRVTVLEKNDTPG 39
PRK06134 PRK06134
putative FAD-binding dehydrogenase; Reviewed
 13-67 2.52e-03

putative FAD-binding dehydrogenase; Reviewed


Pssm-ID: 180419 [Multi-domain]  Cd Length: 581  Bit Score: 40.47  E-value: 2.52e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 435197433  13 ETIECDVLIVGAGPAGLSAALklklqaNDAGKELSIIVLDKGAE-PGSHILSGAVM 67
Cdd:PRK06134   9 PDLECDVLVIGSGAAGLSAAV------TAAWHGLKVIVVEKDPVfGGTTAWSGGWM 58
PRK07121 PRK07121
FAD-binding protein;
14-67 2.70e-03

FAD-binding protein;


Pssm-ID: 180854 [Multi-domain]  Cd Length: 492  Bit Score: 40.26  E-value: 2.70e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 435197433  14 TIECDVLIVGAGPAGLSAAlklkLQANDAGkeLSIIVLDKGAEP-GSHILSGAVM 67
Cdd:PRK07121  18 DDEADVVVVGFGAAGACAA----IEAAAAG--ARVLVLERAAGAgGATALSGGVI 66
PRK06126 PRK06126
hypothetical protein; Provisional
 12-35 3.24e-03

hypothetical protein; Provisional


Pssm-ID: 235704 [Multi-domain]  Cd Length: 545  Bit Score: 40.36  E-value: 3.24e-03
                         10        20
                 ....*....|....*....|....
gi 435197433  12 RETIECDVLIVGAGPAGLSAALKL 35
Cdd:PRK06126   3 ENTSETPVLIVGGGPVGLALALDL 26
PRK06184 PRK06184
hypothetical protein; Provisional
 17-72 4.03e-03

hypothetical protein; Provisional


Pssm-ID: 235728 [Multi-domain]  Cd Length: 502  Bit Score: 39.97  E-value: 4.03e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 435197433  17 CDVLIVGAGPAGLSAALKLklqandAGKELSIIVLDKGAEP--GSHilsGAVMDPRAL 72
Cdd:PRK06184   4 TDVLIVGAGPTGLTLAIEL------ARRGVSFRLIEKAPEPfpGSR---GKGIQPRTQ 52
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
20-64 4.98e-03

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 39.26  E-value: 4.98e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 435197433  20 LIVGAGPAGLSAAlklkLQANDAGKelSIIVLDKGAEPGSHIL-SG 64
Cdd:COG2081    1 IVIGAGAAGLMAA----ITAAERGA--RVLLLEKNPKVGRKILiSG 40
COG3573 COG3573
Predicted oxidoreductase [General function prediction only];
13-52 5.19e-03

Predicted oxidoreductase [General function prediction only];


Pssm-ID: 442794 [Multi-domain]  Cd Length: 551  Bit Score: 39.78  E-value: 5.19e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 435197433  13 ETIECDVLIVGAGPAGLSAALKLKlqanDAGKelSIIVLD 52
Cdd:COG3573    2 AAMDADVIVVGAGLAGLVAAAELA----DAGR--RVLLLD 35
PRK05329 PRK05329
glycerol-3-phosphate dehydrogenase subunit GlpB;
15-49 6.09e-03

glycerol-3-phosphate dehydrogenase subunit GlpB;


Pssm-ID: 235412  Cd Length: 422  Bit Score: 39.06  E-value: 6.09e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 435197433  15 IECDVLIVGAGPAGLSAALKlklqANDAGKELSII 49
Cdd:PRK05329   1 MKFDVLVIGGGLAGLTAALA----AAEAGKRVALV 31
PRK06175 PRK06175
L-aspartate oxidase; Provisional
 15-54 6.35e-03

L-aspartate oxidase; Provisional


Pssm-ID: 180442 [Multi-domain]  Cd Length: 433  Bit Score: 39.28  E-value: 6.35e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 435197433  15 IECDVLIVGAGPAGLSAALKLKlqandagKELSIIVLDKG 54
Cdd:PRK06175   3 LYADVLIVGSGVAGLYSALNLR-------KDLKILMVSKG 35
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
18-64 6.50e-03

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 38.97  E-value: 6.50e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 435197433  18 DVLIVGAGPAGLSAALKLKlqanDAGKELSIIVLdkGAEPG--------SHILSG 64
Cdd:COG1251    3 RIVIIGAGMAGVRAAEELR----KLDPDGEITVI--GAEPHppynrpplSKVLAG 51
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 18-54 8.13e-03

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 38.45  E-value: 8.13e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 435197433   18 DVLIVGAGPAGLSAALKLklqandAGKELSIIVLDKG 54
Cdd:pfam07992   2 DVVVIGGGPAGLAAALTL------AQLGGKVTLIEDE 32
PRK08275 PRK08275
putative oxidoreductase; Provisional
 13-77 8.37e-03

putative oxidoreductase; Provisional


Pssm-ID: 181346 [Multi-domain]  Cd Length: 554  Bit Score: 38.88  E-value: 8.37e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 435197433  13 ETIECDVLIVGAGPAGLSAALKLKLqandAGKELSIIVLDKgaepgSHI-LSGAV---MDprALNE-LIP 77
Cdd:PRK08275   6 QEVETDILVIGGGTAGPMAAIKAKE----RNPALRVLLLEK-----ANVkRSGAIsmgMD--GLNNaVIP 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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