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Conserved domains on  [gi|444254110|gb|ELU60557|]
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hypothetical protein PCS8106_00249 [Streptococcus pneumoniae PCS8106]

Protein Classification

transposase( domain architecture ID 11458135)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0043565|GO:0015074|GO:0006313|GO:0003677|GO:0004803
PubMed:  15469518

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
10-72 5.55e-30

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


:

Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 107.27  E-value: 5.55e-30
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 444254110  10 IYYAHAYSSWERGSNENHNRLIRRWLPKGT--KKTTPKEVAFIENWINNYPKKCLDYKSPSEFLL 72
Cdd:COG2826  254 VYFADPYSPWQRGTNENTNGLLRQYFPKGTdfSTVTQEELDAIADRLNNRPRKCLGYKTPAEVFA 318
 
Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
10-72 5.55e-30

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 107.27  E-value: 5.55e-30
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 444254110  10 IYYAHAYSSWERGSNENHNRLIRRWLPKGT--KKTTPKEVAFIENWINNYPKKCLDYKSPSEFLL 72
Cdd:COG2826  254 VYFADPYSPWQRGTNENTNGLLRQYFPKGTdfSTVTQEELDAIADRLNNRPRKCLGYKTPAEVFA 318
transpos_IS30 NF033563
IS30 family transposase;
9-60 1.43e-26

IS30 family transposase;


Pssm-ID: 468088 [Multi-domain]  Cd Length: 267  Bit Score: 97.28  E-value: 1.43e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 444254110   9 HIYYAHAYSSWERGSNENHNRLIRRWLPKGT--KKTTPKEVAFIENWINNYPKK 60
Cdd:NF033563 214 DVYFADPYSPWQRGTNENTNGLLRQYLPKGTdlSEVSQEELDRIENWLNNRPRK 267
 
Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
10-72 5.55e-30

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 107.27  E-value: 5.55e-30
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 444254110  10 IYYAHAYSSWERGSNENHNRLIRRWLPKGT--KKTTPKEVAFIENWINNYPKKCLDYKSPSEFLL 72
Cdd:COG2826  254 VYFADPYSPWQRGTNENTNGLLRQYFPKGTdfSTVTQEELDAIADRLNNRPRKCLGYKTPAEVFA 318
transpos_IS30 NF033563
IS30 family transposase;
9-60 1.43e-26

IS30 family transposase;


Pssm-ID: 468088 [Multi-domain]  Cd Length: 267  Bit Score: 97.28  E-value: 1.43e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 444254110   9 HIYYAHAYSSWERGSNENHNRLIRRWLPKGT--KKTTPKEVAFIENWINNYPKK 60
Cdd:NF033563 214 DVYFADPYSPWQRGTNENTNGLLRQYLPKGTdlSEVSQEELDRIENWLNNRPRK 267
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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