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Conserved domains on  [gi|444280209|gb|ELU85582|]
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hypothetical protein PNI0360_02177, partial [Streptococcus pneumoniae PNI0360]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_Tnp_IS630 super family cl44367
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
 7-72 8.50e-12

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family includes insertion sequences from Synechocystis PCC 6803 three of which are characterized as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily.


The actual alignment was detected with superfamily member pfam01710:

Pssm-ID: 279973 [Multi-domain]  Cd Length: 119  Bit Score: 55.65  E-value: 8.50e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 444280209    7 MAYSIDFRKKVLSYCERTGSITEASHVFQISRNTIYGWLKlKEKTGELNHQvkgTKPRKVDRDRLK 72
Cdd:pfam01710   1 MAYSLDLRQKVIDYIESGGGITEASKIFKIGRATIYRWLG-REELGATKVE---TRQRKIDRKELK 62
 
Name Accession Description Interval E-value
HTH_Tnp_IS630 pfam01710
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
 7-72 8.50e-12

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family includes insertion sequences from Synechocystis PCC 6803 three of which are characterized as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily.


Pssm-ID: 279973 [Multi-domain]  Cd Length: 119  Bit Score: 55.65  E-value: 8.50e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 444280209    7 MAYSIDFRKKVLSYCERTGSITEASHVFQISRNTIYGWLKlKEKTGELNHQvkgTKPRKVDRDRLK 72
Cdd:pfam01710   1 MAYSLDLRQKVIDYIESGGGITEASKIFKIGRATIYRWLG-REELGATKVE---TRQRKIDRKELK 62
Csa3 COG3415
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ...
 14-75 1.56e-06

CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system


Pssm-ID: 442641 [Multi-domain]  Cd Length: 325  Bit Score: 43.69  E-value: 1.56e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 444280209  14 RKKVLSYCERTGSITEASHVFQISRNTIYGWLKLKEKTGE--LNHQVKGTKPRKVD---RDRLKNYL 75
Cdd:COG3415   28 RLRAVLLLAEGLSVREIAERLGVSRSTVYRWLKRYREGGLagLKDRPRGGRPSKLSdeqRERLLELL 94
transpos_IS630 NF033545
IS630 family transposase;
14-69 1.59e-04

IS630 family transposase;


Pssm-ID: 468076 [Multi-domain]  Cd Length: 298  Bit Score: 37.62  E-value: 1.59e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 444280209  14 RKKVLSYCERTGSITEASHVFQISRNTIYGWLKLKEKTGE--LNHQVKGTKPRKVDRD 69
Cdd:NF033545   2 RARILLLAAEGLSITEIAERLGVSRSTVYRWLKRFNEGGLegLLDKPRPGRPRKLLSE 59
transpos_IS481 NF033577
IS481 family transposase; null
 17-53 3.03e-03

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 34.10  E-value: 3.03e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 444280209  17 VLSYCERTGSITEASHVFQISRNTIYGWLKLKEKTGE 53
Cdd:NF033577   6 VRLVLEDGWSVREAARRFGISRKTVYKWLKRYRAGGE 42
 
Name Accession Description Interval E-value
HTH_Tnp_IS630 pfam01710
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
 7-72 8.50e-12

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family includes insertion sequences from Synechocystis PCC 6803 three of which are characterized as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily.


Pssm-ID: 279973 [Multi-domain]  Cd Length: 119  Bit Score: 55.65  E-value: 8.50e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 444280209    7 MAYSIDFRKKVLSYCERTGSITEASHVFQISRNTIYGWLKlKEKTGELNHQvkgTKPRKVDRDRLK 72
Cdd:pfam01710   1 MAYSLDLRQKVIDYIESGGGITEASKIFKIGRATIYRWLG-REELGATKVE---TRQRKIDRKELK 62
Csa3 COG3415
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ...
 14-75 1.56e-06

CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system


Pssm-ID: 442641 [Multi-domain]  Cd Length: 325  Bit Score: 43.69  E-value: 1.56e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 444280209  14 RKKVLSYCERTGSITEASHVFQISRNTIYGWLKLKEKTGE--LNHQVKGTKPRKVD---RDRLKNYL 75
Cdd:COG3415   28 RLRAVLLLAEGLSVREIAERLGVSRSTVYRWLKRYREGGLagLKDRPRGGRPSKLSdeqRERLLELL 94
HTH_28 pfam13518
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ...
 13-53 3.34e-06

Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.


Pssm-ID: 463908 [Multi-domain]  Cd Length: 52  Bit Score: 39.88  E-value: 3.34e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 444280209  13 FRKKVLSYCERTGSITEASHVFQISRNTIYGWLKLKEKTGE 53
Cdd:pfam13518  1 ERLKIVLLALEGESIKEAARLFGISRSTVYRWIRRYREGGL 41
transpos_IS630 NF033545
IS630 family transposase;
14-69 1.59e-04

IS630 family transposase;


Pssm-ID: 468076 [Multi-domain]  Cd Length: 298  Bit Score: 37.62  E-value: 1.59e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 444280209  14 RKKVLSYCERTGSITEASHVFQISRNTIYGWLKLKEKTGE--LNHQVKGTKPRKVDRD 69
Cdd:NF033545   2 RARILLLAAEGLSITEIAERLGVSRSTVYRWLKRFNEGGLegLLDKPRPGRPRKLLSE 59
transpos_IS481 NF033577
IS481 family transposase; null
 17-53 3.03e-03

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 34.10  E-value: 3.03e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 444280209  17 VLSYCERTGSITEASHVFQISRNTIYGWLKLKEKTGE 53
Cdd:NF033577   6 VRLVLEDGWSVREAARRFGISRKTVYKWLKRYRAGGE 42
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
9-53 5.48e-03

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 32.59  E-value: 5.48e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 444280209  9 YSIDFRKKVLSYCERTG-SITEASHVFQISRNTIYGWLKLKEKTGE 53
Cdd:COG2963   8 YSPEFKAEAVRLVLEGGaSVAEVARELGISPSTLYRWVRQYREGGL 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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