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Conserved domains on  [gi|444285189|gb|ELU90274|]
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hypothetical protein PNI0360_00225, partial [Streptococcus pneumoniae PNI0360]

Protein Classification

transposase( domain architecture ID 11458135)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0043565|GO:0015074|GO:0006313|GO:0003677|GO:0004803
PubMed:  15469518

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
1-78 1.76e-30

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


:

Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 109.59  E-value: 1.76e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444285189   1 GTEFNRLSDvFSEEH---IYYAHPYASWERGTNENHNRFIRRWLPKGT--KKMTPKEVAFIEKWINNYPKKCLDYKSPRE 75
Cdd:COG2826  237 GKEFADHKE-IEAALgikVYFADPYSPWQRGTNENTNGLLRQYFPKGTdfSTVTQEELDAIADRLNNRPRKCLGYKTPAE 315


                 ...
gi 444285189  76 DFL 78
Cdd:COG2826  316 VFA 318
 
Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
1-78 1.76e-30

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 109.59  E-value: 1.76e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444285189   1 GTEFNRLSDvFSEEH---IYYAHPYASWERGTNENHNRFIRRWLPKGT--KKMTPKEVAFIEKWINNYPKKCLDYKSPRE 75
Cdd:COG2826  237 GKEFADHKE-IEAALgikVYFADPYSPWQRGTNENTNGLLRQYFPKGTdfSTVTQEELDAIADRLNNRPRKCLGYKTPAE 315


                 ...
gi 444285189  76 DFL 78
Cdd:COG2826  316 VFA 318
transpos_IS30 NF033563
IS30 family transposase;
1-66 2.26e-27

IS30 family transposase;


Pssm-ID: 468088 [Multi-domain]  Cd Length: 267  Bit Score: 100.37  E-value: 2.26e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444285189   1 GTEFNRLSDVF--SEEHIYYAHPYASWERGTNENHNRFIRRWLPKGT--KKMTPKEVAFIEKWINNYPKK 66
Cdd:NF033563 198 GKEFARHSEIEeaLGIDVYFADPYSPWQRGTNENTNGLLRQYLPKGTdlSEVSQEELDRIENWLNNRPRK 267
 
Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
1-78 1.76e-30

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 109.59  E-value: 1.76e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444285189   1 GTEFNRLSDvFSEEH---IYYAHPYASWERGTNENHNRFIRRWLPKGT--KKMTPKEVAFIEKWINNYPKKCLDYKSPRE 75
Cdd:COG2826  237 GKEFADHKE-IEAALgikVYFADPYSPWQRGTNENTNGLLRQYFPKGTdfSTVTQEELDAIADRLNNRPRKCLGYKTPAE 315


                 ...
gi 444285189  76 DFL 78
Cdd:COG2826  316 VFA 318
transpos_IS30 NF033563
IS30 family transposase;
1-66 2.26e-27

IS30 family transposase;


Pssm-ID: 468088 [Multi-domain]  Cd Length: 267  Bit Score: 100.37  E-value: 2.26e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444285189   1 GTEFNRLSDVF--SEEHIYYAHPYASWERGTNENHNRFIRRWLPKGT--KKMTPKEVAFIEKWINNYPKK 66
Cdd:NF033563 198 GKEFARHSEIEeaLGIDVYFADPYSPWQRGTNENTNGLLRQYLPKGTdlSEVSQEELDRIENWLNNRPRK 267
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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