NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|448966431|gb|EMB47087|]
View 

30S ribosomal protein S20 [Treponema denticola AL-2]

Protein Classification

30S ribosomal protein S20( domain architecture ID 10000824)

30S ribosomal protein S20 binds directly to the 16S rRNA and is involved in post-translational inhibition of the polyamine biosynthetic enzymes arginine and ornithine decarboxylase

Gene Symbol:  rpsT
Gene Ontology:  GO:0015935|GO:0003735|GO:0006412|GO:0019843
PubMed:  24524803
SCOP:  4000787

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RpsT COG0268
Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 ...
 4-84 3.51e-17

Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 440038  Cd Length: 87  Bit Score: 68.95  E-value: 3.51e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 448966431  4 RSAIKRHNQSEVRRMRNRSAKSEVRTTARKYTEAVHAANAENAAALLRELSSQLDSAARKGILTKNSAARKKSRMQLLYN 83
Cdd:COG0268   5 KSAKKRIRQNEKRRLRNRARKSRLRTAIKKVRKAIAAGDKEAAQEALKAAQSKLDKAASKGVIHKNKAARKKSRLAKKVN 84


                .
gi 448966431 84 A 84
Cdd:COG0268  85 A 85
 
Name Accession Description Interval E-value
RpsT COG0268
Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 ...
 4-84 3.51e-17

Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440038  Cd Length: 87  Bit Score: 68.95  E-value: 3.51e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 448966431  4 RSAIKRHNQSEVRRMRNRSAKSEVRTTARKYTEAVHAANAENAAALLRELSSQLDSAARKGILTKNSAARKKSRMQLLYN 83
Cdd:COG0268   5 KSAKKRIRQNEKRRLRNRARKSRLRTAIKKVRKAIAAGDKEAAQEALKAAQSKLDKAASKGVIHKNKAARKKSRLAKKVN 84


                .
gi 448966431 84 A 84
Cdd:COG0268  85 A 85
Ribosomal_S20p pfam01649
Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.
 5-78 2.97e-16

Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.


Pssm-ID: 460280  Cd Length: 76  Bit Score: 66.30  E-value: 2.97e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 448966431   5 SAIKRHNQSEVRRMRNRSAKSEVRTTARKYTEAVHAANAENAAALLRELSSQLDSAARKGILTKNSAARKKSRM 78
Cdd:pfam01649  1 SAKKRIRQNEKRRLRNKAVKSRVRTAIKKVRAAVAAGDKEAAEAALKAAVSKIDKAASKGVIHKNTAARKKSRL 74
S20 TIGR00029
ribosomal protein S20; This family consists of bacterial (and chloroplast) examples of the ...
 2-78 1.14e-07

ribosomal protein S20; This family consists of bacterial (and chloroplast) examples of the bacteria ribosomal small subunit protein S20. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 211539  Cd Length: 87  Bit Score: 44.84  E-value: 1.14e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 448966431   2 KNRSAIKRHNQSEVRRMRNRSAKSEVRTTARKYTEAVHAANAENAAALLRELSSQLDSAARKGILTKNSAARKKSRM 78
Cdd:TIGR00029  3 NIKSAEKRIRQNEKRRLHNASQKSKMKTIIKKVYAAIAAGDKDKAQEAFKEAAKKLDRAARKGIIHKNKAARKKSRL 79
rps20 CHL00102
ribosomal protein S20
 2-85 4.03e-07

ribosomal protein S20


Pssm-ID: 214366  Cd Length: 93  Bit Score: 43.60  E-value: 4.03e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 448966431  2 KNRSAIKRHNQSEVRRMRNRSAKSEVRTTARKY-------TEAVHAANAENAAALLRELSSQLDSAARKGILTKNSAARK 74
Cdd:CHL00102  3 NNKSAIKRIKISERNRLRNKAYKSSVKTLIKKYlknledyKTSPNSNNKKKVQETLSSVYSKIDKAVKKGVFHKNTAARK 82

                        90
                ....*....|.
gi 448966431 75 KSRMQLLYNAS 85
Cdd:CHL00102 83 KSKLAKALKKS 93
 
Name Accession Description Interval E-value
RpsT COG0268
Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 ...
 4-84 3.51e-17

Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440038  Cd Length: 87  Bit Score: 68.95  E-value: 3.51e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 448966431  4 RSAIKRHNQSEVRRMRNRSAKSEVRTTARKYTEAVHAANAENAAALLRELSSQLDSAARKGILTKNSAARKKSRMQLLYN 83
Cdd:COG0268   5 KSAKKRIRQNEKRRLRNRARKSRLRTAIKKVRKAIAAGDKEAAQEALKAAQSKLDKAASKGVIHKNKAARKKSRLAKKVN 84


                .
gi 448966431 84 A 84
Cdd:COG0268  85 A 85
Ribosomal_S20p pfam01649
Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.
 5-78 2.97e-16

Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.


Pssm-ID: 460280  Cd Length: 76  Bit Score: 66.30  E-value: 2.97e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 448966431   5 SAIKRHNQSEVRRMRNRSAKSEVRTTARKYTEAVHAANAENAAALLRELSSQLDSAARKGILTKNSAARKKSRM 78
Cdd:pfam01649  1 SAKKRIRQNEKRRLRNKAVKSRVRTAIKKVRAAVAAGDKEAAEAALKAAVSKIDKAASKGVIHKNTAARKKSRL 74
S20 TIGR00029
ribosomal protein S20; This family consists of bacterial (and chloroplast) examples of the ...
 2-78 1.14e-07

ribosomal protein S20; This family consists of bacterial (and chloroplast) examples of the bacteria ribosomal small subunit protein S20. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 211539  Cd Length: 87  Bit Score: 44.84  E-value: 1.14e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 448966431   2 KNRSAIKRHNQSEVRRMRNRSAKSEVRTTARKYTEAVHAANAENAAALLRELSSQLDSAARKGILTKNSAARKKSRM 78
Cdd:TIGR00029  3 NIKSAEKRIRQNEKRRLHNASQKSKMKTIIKKVYAAIAAGDKDKAQEAFKEAAKKLDRAARKGIIHKNKAARKKSRL 79
rps20 CHL00102
ribosomal protein S20
 2-85 4.03e-07

ribosomal protein S20


Pssm-ID: 214366  Cd Length: 93  Bit Score: 43.60  E-value: 4.03e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 448966431  2 KNRSAIKRHNQSEVRRMRNRSAKSEVRTTARKY-------TEAVHAANAENAAALLRELSSQLDSAARKGILTKNSAARK 74
Cdd:CHL00102  3 NNKSAIKRIKISERNRLRNKAYKSSVKTLIKKYlknledyKTSPNSNNKKKVQETLSSVYSKIDKAVKKGVFHKNTAARK 82

                        90
                ....*....|.
gi 448966431 75 KSRMQLLYNAS 85
Cdd:CHL00102 83 KSKLAKALKKS 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH