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Conserved domains on  [gi|451993474|gb|EMD85947|]
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hypothetical protein COCHEDRAFT_1147602 [Bipolaris maydis C5]

Protein Classification

eukaryotic translation initiation factor 5A family protein( domain architecture ID 1904013)

eukaryotic translation initiation factor 5A (eIF-5A) family protein is a translation factor that promotes translation elongation and termination, particularly upon ribosome stalling at specific amino acid sequence contexts

CATH:  2.40.50.140
Gene Ontology:  GO:0008135|GO:0003723|GO:0006412
PubMed:  17578650|25029904|24402910

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03107 super family cl42976
eukaryotic translation initiation factor 5A; Provisional
 8-161 3.71e-75

eukaryotic translation initiation factor 5A; Provisional


The actual alignment was detected with superfamily member PLN03107:

Pssm-ID: 215580  Cd Length: 159  Bit Score: 221.51  E-value: 3.71e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451993474   8 HEHTFDSADAGASKTFPMQCSALRKNGFVCIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDLFTGKKLEELCPSTHNMDVP 87
Cdd:PLN03107   4 EEHHFESADAGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVP 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 451993474  88 NVTRREYQLLDVTDDGFLSLMTDDGATKDDVKVPDGEvgDKIT---KLFTEEGKDTNVIVLTAMGEEAAIDAKEAPK 161
Cdd:PLN03107  84 HVNRTDYQLIDISEDGFVSLMDESGNTKDDLKLPTED--DTLAeqiKDGFDEGKDLVVTVMSAMGEEQICALKEIGP 158
 
Name Accession Description Interval E-value
PLN03107 PLN03107
eukaryotic translation initiation factor 5A; Provisional
 8-161 3.71e-75

eukaryotic translation initiation factor 5A; Provisional


Pssm-ID: 215580  Cd Length: 159  Bit Score: 221.51  E-value: 3.71e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451993474   8 HEHTFDSADAGASKTFPMQCSALRKNGFVCIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDLFTGKKLEELCPSTHNMDVP 87
Cdd:PLN03107   4 EEHHFESADAGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVP 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 451993474  88 NVTRREYQLLDVTDDGFLSLMTDDGATKDDVKVPDGEvgDKIT---KLFTEEGKDTNVIVLTAMGEEAAIDAKEAPK 161
Cdd:PLN03107  84 HVNRTDYQLIDISEDGFVSLMDESGNTKDDLKLPTED--DTLAeqiKDGFDEGKDLVVTVMSAMGEEQICALKEIGP 158
eIF_5A TIGR00037
translation elongation factor IF5A; Recent work (2009) changed the view of eIF5A in eukaryotes ...
 19-157 1.31e-55

translation elongation factor IF5A; Recent work (2009) changed the view of eIF5A in eukaryotes and aIF5A in archaea, hypusine-containing proteins, from translation initiation factor to translation elongation factor. [Protein synthesis, Translation factors]


Pssm-ID: 272866 [Multi-domain]  Cd Length: 130  Bit Score: 171.16  E-value: 1.31e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451993474   19 ASKTFPMQCSALRKNGFVCIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDLFTGKKLEELCPSTHNMDVPNVTRREYQLLD 98
Cdd:TIGR00037   1 MSATKQVEVSALRVGGYVVIDGEPCKIVDISTSKPGKHGHAKARVVAIGIFDGQKREFVSPVTSKVEVPIVDRREAQVLA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 451993474   99 VtDDGFLSLMTDDGATKDDVKVPDgEVGDKItklftEEGKDtnVIVLTAMGEEAAIDAK 157
Cdd:TIGR00037  81 I-MGGMVQLMDLETYETFELPIPE-ELGDSL-----EPGFE--VEYIEALGQRKIIRFK 130
eIF-5a pfam01287
Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; eIF5A, previously thought to be ...
 88-157 1.40e-32

Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; eIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast.


Pssm-ID: 396035  Cd Length: 69  Bit Score: 110.36  E-value: 1.40e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451993474   88 NVTRREYQLLDVTDDGFLSLMTDDGATKDDVKVPDGEVGDKITKLFtEEGKDTNVIVLTAMGEEAAIDAK 157
Cdd:pfam01287   1 NVKRTEYQLIDISDDGFLSLMDDDGETKEDVKLPEGELGKEIKAKF-EEGKDVLVTVLSAMGEEKIIAVK 69
S1_eIF5A cd04468
S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. ...
 89-159 1.82e-30

S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.


Pssm-ID: 239914  Cd Length: 69  Bit Score: 104.93  E-value: 1.82e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 451993474  89 VTRREYQLLDVtDDGFLSLMTDDGATKDDVKVPDGEVGDKITKLFtEEGKDTNVIVLTAMGEEAAIDAKEA 159
Cdd:cd04468    1 VKRTEYQLIDI-DDGFLSLMDDDGETREDLKLPEGELGKEIREKF-DEGKDVLVTVLSAMGEEQAVAVKEA 69
Efp COG0231
Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ...
 32-146 2.90e-06

Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]; Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 440001 [Multi-domain]  Cd Length: 186  Bit Score: 45.01  E-value: 2.90e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451993474  32 KNGFVC-IKNRPCKIVDMSTSKTGKhGHAKVHLVAIDLFTGKKLEELCPSTHNMDVPNVTRREYQLLdVTDDGFLSLMtd 110
Cdd:COG0231    8 RKGLVIeIDGEPYVVVEFQHVKPGK-GGAFVRTKLKNLLTGKVVEKTFKSGDKVEEADLERREMQYL-YNDGDGYVFM-- 83

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 451993474 111 DGATKDDVKVPDGEVGDKitKLFTEEGkdTNVIVLT 146
Cdd:COG0231   84 DTETYEQIELPKEVVGDA--AKFLKEG--MEVTVLF 115
 
Name Accession Description Interval E-value
PLN03107 PLN03107
eukaryotic translation initiation factor 5A; Provisional
 8-161 3.71e-75

eukaryotic translation initiation factor 5A; Provisional


Pssm-ID: 215580  Cd Length: 159  Bit Score: 221.51  E-value: 3.71e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451993474   8 HEHTFDSADAGASKTFPMQCSALRKNGFVCIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDLFTGKKLEELCPSTHNMDVP 87
Cdd:PLN03107   4 EEHHFESADAGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVP 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 451993474  88 NVTRREYQLLDVTDDGFLSLMTDDGATKDDVKVPDGEvgDKIT---KLFTEEGKDTNVIVLTAMGEEAAIDAKEAPK 161
Cdd:PLN03107  84 HVNRTDYQLIDISEDGFVSLMDESGNTKDDLKLPTED--DTLAeqiKDGFDEGKDLVVTVMSAMGEEQICALKEIGP 158
eIF_5A TIGR00037
translation elongation factor IF5A; Recent work (2009) changed the view of eIF5A in eukaryotes ...
 19-157 1.31e-55

translation elongation factor IF5A; Recent work (2009) changed the view of eIF5A in eukaryotes and aIF5A in archaea, hypusine-containing proteins, from translation initiation factor to translation elongation factor. [Protein synthesis, Translation factors]


Pssm-ID: 272866 [Multi-domain]  Cd Length: 130  Bit Score: 171.16  E-value: 1.31e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451993474   19 ASKTFPMQCSALRKNGFVCIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDLFTGKKLEELCPSTHNMDVPNVTRREYQLLD 98
Cdd:TIGR00037   1 MSATKQVEVSALRVGGYVVIDGEPCKIVDISTSKPGKHGHAKARVVAIGIFDGQKREFVSPVTSKVEVPIVDRREAQVLA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 451993474   99 VtDDGFLSLMTDDGATKDDVKVPDgEVGDKItklftEEGKDtnVIVLTAMGEEAAIDAK 157
Cdd:TIGR00037  81 I-MGGMVQLMDLETYETFELPIPE-ELGDSL-----EPGFE--VEYIEALGQRKIIRFK 130
PTZ00328 PTZ00328
eukaryotic initiation factor 5a; Provisional
 4-159 2.48e-51

eukaryotic initiation factor 5a; Provisional


Pssm-ID: 140349 [Multi-domain]  Cd Length: 166  Bit Score: 161.37  E-value: 2.48e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451993474   4 NDAQHEHTFDSADAGASKTFPMQCSALRKNGFVCIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDLFTGKKLEELCPSTHN 83
Cdd:PTZ00328   2 SDEDHDFSHQGGGDNASKTYPLPAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451993474  84 MDVPNVTRREYQLLDVTDD------GFLSLMTDDGATKDDVKV-PDGEVGDKITKLFtEEGKDTNVIVLTAMGEEAAIDA 156
Cdd:PTZ00328  82 VEVPFVKTFTYSVLDIQPNedpslpAHLSLMDDEGESREDLDMpPDAALATQIKEQF-DSGKEVLVVVVSAMGTEQVLQT 160


                 ...
gi 451993474 157 KEA 159
Cdd:PTZ00328 161 KNA 163
eIF-5a pfam01287
Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; eIF5A, previously thought to be ...
 88-157 1.40e-32

Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; eIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast.


Pssm-ID: 396035  Cd Length: 69  Bit Score: 110.36  E-value: 1.40e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451993474   88 NVTRREYQLLDVTDDGFLSLMTDDGATKDDVKVPDGEVGDKITKLFtEEGKDTNVIVLTAMGEEAAIDAK 157
Cdd:pfam01287   1 NVKRTEYQLIDISDDGFLSLMDDDGETKEDVKLPEGELGKEIKAKF-EEGKDVLVTVLSAMGEEKIIAVK 69
S1_eIF5A cd04468
S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. ...
 89-159 1.82e-30

S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.


Pssm-ID: 239914  Cd Length: 69  Bit Score: 104.93  E-value: 1.82e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 451993474  89 VTRREYQLLDVtDDGFLSLMTDDGATKDDVKVPDGEVGDKITKLFtEEGKDTNVIVLTAMGEEAAIDAKEA 159
Cdd:cd04468    1 VKRTEYQLIDI-DDGFLSLMDDDGETREDLKLPEGELGKEIREKF-DEGKDVLVTVLSAMGEEQAVAVKEA 69
PRK03999 PRK03999
translation initiation factor IF-5A; Provisional
 30-149 4.91e-21

translation initiation factor IF-5A; Provisional


Pssm-ID: 235193 [Multi-domain]  Cd Length: 129  Bit Score: 83.04  E-value: 4.91e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451993474  30 LRKNGFVCIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDLFTGKKLEELCPSTHNMDVPNVTRREYQLLDVTDDgFLSLMT 109
Cdd:PRK03999  11 LKEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVDAKVEVPIIEKKTGQVLSIMGD-VVQLMD 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 451993474 110 DDGATKDDVKVPDgEVGDKItklftEEGKdtNVIVLTAMG 149
Cdd:PRK03999  90 LETYETFEIPIPE-ELKDKL-----EPGV--EVEYWEAMG 121
Efp COG0231
Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ...
 32-146 2.90e-06

Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]; Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 440001 [Multi-domain]  Cd Length: 186  Bit Score: 45.01  E-value: 2.90e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451993474  32 KNGFVC-IKNRPCKIVDMSTSKTGKhGHAKVHLVAIDLFTGKKLEELCPSTHNMDVPNVTRREYQLLdVTDDGFLSLMtd 110
Cdd:COG0231    8 RKGLVIeIDGEPYVVVEFQHVKPGK-GGAFVRTKLKNLLTGKVVEKTFKSGDKVEEADLERREMQYL-YNDGDGYVFM-- 83

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 451993474 111 DGATKDDVKVPDGEVGDKitKLFTEEGkdTNVIVLT 146
Cdd:COG0231   84 DTETYEQIELPKEVVGDA--AKFLKEG--MEVTVLF 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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