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Conserved domains on  [gi|476961664|gb|ENC49703|]
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transposase family protein, partial [Escherichia coli P0299917.2]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3547 super family cl34632
Transposase [Mobilome: prophages, transposons];
1-43 1.32e-06

Transposase [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG3547:

Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 41.83  E-value: 1.32e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 476961664   1 MEhELHYIGIDTAKEKLDVDVLRPDGR--HRTKKFANTTKGHDEL 43
Cdd:COG3547    1 ME-TVIFVGIDVSKDTFDVAVVDEDGKvvLKVFRFANDRAGLLAL 44
 
Name Accession Description Interval E-value
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
1-43 1.32e-06

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 41.83  E-value: 1.32e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 476961664   1 MEhELHYIGIDTAKEKLDVDVLRPDGR--HRTKKFANTTKGHDEL 43
Cdd:COG3547    1 ME-TVIFVGIDVSKDTFDVAVVDEDGKvvLKVFRFANDRAGLLAL 44
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
 7-43 5.31e-05

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 37.31  E-value: 5.31e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 476961664   7 YIGIDTAKEKLDVDVLRPDGR-HRTKKFANTTKGHDEL 43
Cdd:NF033542   1 FVGIDVAKEVFDVAVVDASGGeVLRKKFKNTKAGREAL 38
DEDD_Tnp_IS110 pfam01548
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
 8-43 8.35e-03

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.


Pssm-ID: 460249  Cd Length: 155  Bit Score: 31.05  E-value: 8.35e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 476961664    8 IGIDTAKEKLDVDVLRPDG-RHRTKKFANTTKGHDEL 43
Cdd:pfam01548   1 VGIDVAKKHHHACVIDPDGkVLLSRRFPNDEEGLRAL 37
 
Name Accession Description Interval E-value
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
1-43 1.32e-06

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 41.83  E-value: 1.32e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 476961664   1 MEhELHYIGIDTAKEKLDVDVLRPDGR--HRTKKFANTTKGHDEL 43
Cdd:COG3547    1 ME-TVIFVGIDVSKDTFDVAVVDEDGKvvLKVFRFANDRAGLLAL 44
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
 7-43 5.31e-05

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 37.31  E-value: 5.31e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 476961664   7 YIGIDTAKEKLDVDVLRPDGR-HRTKKFANTTKGHDEL 43
Cdd:NF033542   1 FVGIDVAKEVFDVAVVDASGGeVLRKKFKNTKAGREAL 38
DEDD_Tnp_IS110 pfam01548
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
 8-43 8.35e-03

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.


Pssm-ID: 460249  Cd Length: 155  Bit Score: 31.05  E-value: 8.35e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 476961664    8 IGIDTAKEKLDVDVLRPDG-RHRTKKFANTTKGHDEL 43
Cdd:pfam01548   1 VGIDVAKKHHHACVIDPDGkVLLSRRFPNDEEGLRAL 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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