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Conserved domains on  [gi|477324834|gb|ENF94659|]
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flagellar hook capping family protein [Escherichia coli P0305260.13]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FLgD_tudor super family cl29105
FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in ...
 1-228 6.76e-65

FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it contains a nested Ig-like domain within it. However in some firmicute proteins this inserted domain is absent such as Q67K21.


The actual alignment was detected with superfamily member PRK09619:

Pssm-ID: 452922 [Multi-domain]  Cd Length: 218  Bit Score: 200.78  E-value: 6.76e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834   1 MNTLALNAQSPQPTATAESNNVAASDTQSSsdsspvDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQ 80
Cdd:PRK09619   1 MQINESRNSANVGNQSPAPEGGLPGAEQLN------NQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAKL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834  81 ANTNAVLMSNIQVMALGNLVGDDIMVQTTALQVSDQTINGRATLDDACTTADLHFTDAAGDDYTVSLIPQgsssvGPGQV 160
Cdd:PRK09619  75 MKSNTVLMDNMQTLATANLVGQQVMVESHEITLGEDPVAGRLTLKHPAPTLTLHITDILGQEKKIDLGKQ-----PAGPV 149

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 477324834 161 DFSVNPADYGIPPGDYDVSVVTNTGEEEVPIEVSGEVEDVRIPLDGSSPVLNVAGVGEVPFTMISQFG 228
Cdd:PRK09619 150 NFTLDPAALGLQPGQYQLSVVSGSGEELIPVEVAGKVNNVRISPQGGAPQLNITGLGEVPYYQITQFG 217
 
Name Accession Description Interval E-value
flgD PRK09619
flagellar hook assembly protein FlgD;
1-228 6.76e-65

flagellar hook assembly protein FlgD;


Pssm-ID: 181996 [Multi-domain]  Cd Length: 218  Bit Score: 200.78  E-value: 6.76e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834   1 MNTLALNAQSPQPTATAESNNVAASDTQSSsdsspvDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQ 80
Cdd:PRK09619   1 MQINESRNSANVGNQSPAPEGGLPGAEQLN------NQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAKL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834  81 ANTNAVLMSNIQVMALGNLVGDDIMVQTTALQVSDQTINGRATLDDACTTADLHFTDAAGDDYTVSLIPQgsssvGPGQV 160
Cdd:PRK09619  75 MKSNTVLMDNMQTLATANLVGQQVMVESHEITLGEDPVAGRLTLKHPAPTLTLHITDILGQEKKIDLGKQ-----PAGPV 149

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 477324834 161 DFSVNPADYGIPPGDYDVSVVTNTGEEEVPIEVSGEVEDVRIPLDGSSPVLNVAGVGEVPFTMISQFG 228
Cdd:PRK09619 150 NFTLDPAALGLQPGQYQLSVVSGSGEELIPVEVAGKVNNVRISPQGGAPQLNITGLGEVPYYQITQFG 217
FlgD COG1843
Flagellar hook-capping protein FlgD [Cell motility];
1-230 7.37e-35

Flagellar hook-capping protein FlgD [Cell motility];


Pssm-ID: 441448 [Multi-domain]  Cd Length: 223  Bit Score: 123.96  E-value: 7.37e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834   1 MNTLALNAQSPQPTATAESNNVAASDTQSSsdsspvDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQ 80
Cdd:COG1843    1 MATSSSSSVLSSLSTSSTSSSSSSSSSLGK------DDFLKLLVAQLQNQDPLNPMDNTEFIAQLAQFSTVEQIENLNTT 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834  81 ANTNAVLMSNIQVMALGNLVGDDIMVQTTALQVSDQTINGRATLDDACTTADLHFTDAAGDdyTVSLIPQGSSSvgPGQV 160
Cdd:COG1843   75 LESLASSLTSSQALQASSLIGKEVLVEGNTISLDGGSASGGFELPSAADSVTVTITDANGN--VVRTIDLGAQS--AGVH 150

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 477324834 161 DFSVNPADY---GIPPGDYDVSVVTNTGEEEVPI--EVSGEVEDVRipLDGSSPVLNVAGVGEVPFTMISQFGVP 230
Cdd:COG1843  151 TFTWDGTDDdgnALPDGTYTFSVEATDDGEPVTAttLVYGKVTSVT--LSGGGPVLNLGGGGSVPLSDVTEIRDP 223
FlgD pfam03963
Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required ...
 7-77 5.81e-10

Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum. It appears to act as a hook-capping protein to enable assembly of hook protein subunits. FlgD regulates the assembly of the hook cap structure to prevent leakage of hook monomers into the medium and hook monomer polymerization and also plays a role in determination of the correct hook length, with the help of the FliK protein. This family represents the N-terminal conserved region of FlgD. A recent crystal structure showed that this region was likely to be flexible and was cleaved off during crystallization.


Pssm-ID: 427619 [Multi-domain]  Cd Length: 75  Bit Score: 54.17  E-value: 5.81e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 477324834    7 NAQSPQPTATAESNNVAASDTQSSSdsspvDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEM 77
Cdd:pfam03963   4 TNSSSTTSTSSSSSTSAKSSSTLGK-----DDFLKLLTTQLQNQDPLNPMDNTQFTSQLAQFSSVEQIEKL 69
 
Name Accession Description Interval E-value
flgD PRK09619
flagellar hook assembly protein FlgD;
1-228 6.76e-65

flagellar hook assembly protein FlgD;


Pssm-ID: 181996 [Multi-domain]  Cd Length: 218  Bit Score: 200.78  E-value: 6.76e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834   1 MNTLALNAQSPQPTATAESNNVAASDTQSSsdsspvDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQ 80
Cdd:PRK09619   1 MQINESRNSANVGNQSPAPEGGLPGAEQLN------NQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAKL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834  81 ANTNAVLMSNIQVMALGNLVGDDIMVQTTALQVSDQTINGRATLDDACTTADLHFTDAAGDDYTVSLIPQgsssvGPGQV 160
Cdd:PRK09619  75 MKSNTVLMDNMQTLATANLVGQQVMVESHEITLGEDPVAGRLTLKHPAPTLTLHITDILGQEKKIDLGKQ-----PAGPV 149

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 477324834 161 DFSVNPADYGIPPGDYDVSVVTNTGEEEVPIEVSGEVEDVRIPLDGSSPVLNVAGVGEVPFTMISQFG 228
Cdd:PRK09619 150 NFTLDPAALGLQPGQYQLSVVSGSGEELIPVEVAGKVNNVRISPQGGAPQLNITGLGEVPYYQITQFG 217
FlgD COG1843
Flagellar hook-capping protein FlgD [Cell motility];
1-230 7.37e-35

Flagellar hook-capping protein FlgD [Cell motility];


Pssm-ID: 441448 [Multi-domain]  Cd Length: 223  Bit Score: 123.96  E-value: 7.37e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834   1 MNTLALNAQSPQPTATAESNNVAASDTQSSsdsspvDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQ 80
Cdd:COG1843    1 MATSSSSSVLSSLSTSSTSSSSSSSSSLGK------DDFLKLLVAQLQNQDPLNPMDNTEFIAQLAQFSTVEQIENLNTT 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834  81 ANTNAVLMSNIQVMALGNLVGDDIMVQTTALQVSDQTINGRATLDDACTTADLHFTDAAGDdyTVSLIPQGSSSvgPGQV 160
Cdd:COG1843   75 LESLASSLTSSQALQASSLIGKEVLVEGNTISLDGGSASGGFELPSAADSVTVTITDANGN--VVRTIDLGAQS--AGVH 150

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 477324834 161 DFSVNPADY---GIPPGDYDVSVVTNTGEEEVPI--EVSGEVEDVRipLDGSSPVLNVAGVGEVPFTMISQFGVP 230
Cdd:COG1843  151 TFTWDGTDDdgnALPDGTYTFSVEATDDGEPVTAttLVYGKVTSVT--LSGGGPVLNLGGGGSVPLSDVTEIRDP 223
flgD PRK06655
flagellar hook assembly protein FlgD;
12-228 1.17e-23

flagellar hook assembly protein FlgD;


Pssm-ID: 235847 [Multi-domain]  Cd Length: 225  Bit Score: 94.63  E-value: 1.17e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834  12 QPTATAESNNVAASDTqsssdsspvDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNI 91
Cdd:PRK06655  17 TTSSSSSSKKGAADLQ---------DDFLTLLVAQLKNQDPLNPMDNSQMTSQLAQFSTVSGIEKLNTTLGSLSSQMTSS 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834  92 QVMALGNLVGDDIMVQTTALQVSDQ-TINGRATLDDACTTADLHFTDAAGDdyTVSLIPQGSSSvgPGQVDFS---VNPA 167
Cdd:PRK06655  88 QALQASSLVGRGVLVPGDTVLVGTGgTTPFGVELPSAADNVTVTITDSAGQ--VVRTIDLGAQS--AGVVSFTwdgTDTD 163

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 477324834 168 DYGIPPGDYDVSVVTNTG--EEEVPIEVSGEVEDVRIPLDGSSPVLNVAGVGeVPFTMISQFG 228
Cdd:PRK06655 164 GNALPDGNYTIKASASVGgkQLVAQTLTYANVQSVSLGANGGGLDLNLAGTG-VTLSDVRQIL 225
flgD PRK06009
flagellar hook assembly protein FlgD;
4-84 1.46e-11

flagellar hook assembly protein FlgD;


Pssm-ID: 235670 [Multi-domain]  Cd Length: 140  Bit Score: 60.11  E-value: 1.46e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834   4 LALNAQSPQPTATAESNNVAASDTQSSSDSSPV--DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVammeEMSVQA 81
Cdd:PRK06009   1 MAVDATTSATSSSTTSSTSTASNSTSAANKASVnyDSFLQLLIAQMKNQDPTDPMDATQYVSQLATFSQV----EQSIQT 76


                 ...
gi 477324834  82 NTN 84
Cdd:PRK06009  77 NSK 79
FlgD pfam03963
Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required ...
 7-77 5.81e-10

Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum. It appears to act as a hook-capping protein to enable assembly of hook protein subunits. FlgD regulates the assembly of the hook cap structure to prevent leakage of hook monomers into the medium and hook monomer polymerization and also plays a role in determination of the correct hook length, with the help of the FliK protein. This family represents the N-terminal conserved region of FlgD. A recent crystal structure showed that this region was likely to be flexible and was cleaved off during crystallization.


Pssm-ID: 427619 [Multi-domain]  Cd Length: 75  Bit Score: 54.17  E-value: 5.81e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 477324834    7 NAQSPQPTATAESNNVAASDTQSSSdsspvDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEM 77
Cdd:pfam03963   4 TNSSSTTSTSSSSSTSAKSSSTLGK-----DDFLKLLTTQLQNQDPLNPMDNTQFTSQLAQFSSVEQIEKL 69
FLgD_tudor pfam13861
FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in ...
 92-222 7.29e-10

FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it contains a nested Ig-like domain within it. However in some firmicute proteins this inserted domain is absent such as Q67K21.


Pssm-ID: 433533  Cd Length: 136  Bit Score: 55.29  E-value: 7.29e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834   92 QVMALGNLVGDDIMVQTTALQVS-DQTINGRATLDDACTTADLHFTDAAGDdyTVSLIPQGSSSvgPGQVDFSVNPADY- 169
Cdd:pfam13861   2 QALQAASLIGKEVLVPGDTISLSaDGGATGGVELPSAADNVTVTIYDSSGQ--VVRTIDLGAQA--AGNVSFTWDGKDSd 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 477324834  170 --GIPPGDYDVSVVTNTG--EEEVPIEVSGEVEDVRIPlDGSSPVLNVAGVGEVPFT 222
Cdd:pfam13861  78 gnQLPDGTYTFSVTATADgtSVAVTTLVYGTVDSVSLG-GDGGPLLNLGLGGTVPLS 133
flgD PRK12813
flagellar basal body rod modification protein; Reviewed
 3-225 4.49e-09

flagellar basal body rod modification protein; Reviewed


Pssm-ID: 237214 [Multi-domain]  Cd Length: 223  Bit Score: 54.73  E-value: 4.49e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834   3 TLALNAQSPQPTATAESNNVAASDTQSSSDSspVDTFLTLFVAEIQNQDPTDPTDATEYIDQLssmAQVAMMEEmsvQAN 82
Cdd:PRK12813   1 MDIVTGTVTSPGTTTGSSRGSASAASALTSD--FETFLRMLTTQLQNQDPLNPMDSSDYAAQL---ATFSGVEQ---QVK 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834  83 TNAVL---MSNIQVMALGNLVGDDIM-VQTTALQVSDQT-----INGRATLDdactTADLHFTDAAGDDYTVSLIPQGSS 153
Cdd:PRK12813  73 TNDLLtglGASLGVMGLSQLAGWIGReARAEAPVWFDGTpvtisPNPAADAD----KAELVVRDAAGAEVARETVPVGAG 148

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 477324834 154 SVGPGQVDFSVNPadygIPPGDYDVSVVTNTGEE---EVPIEVSGEVEDVRIplDGSSPVLNVAGVGEVPFTMIS 225
Cdd:PRK12813 149 PVEWAGEDADGNP----LPNGAYSFVVESYSGGElldTEPAEVYSRIVEAQG--GSGGTVLVLEGGIEVPASSVT 217
flgD PRK09618
flagellar hook assembly protein FlgD;
37-120 6.29e-08

flagellar hook assembly protein FlgD;


Pssm-ID: 236594 [Multi-domain]  Cd Length: 142  Bit Score: 50.38  E-value: 6.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834  37 DTFLTLFVAEIQNQDPTDPTDATEYIDQlssMAQVAMMEEMSVQANTNAVLMSNIQ-VMALGNLVGDDIMVQTTALQVSD 115
Cdd:PRK09618  30 DDFLKLLITQLQNQDPTNPMEDKEFIAQ---MAQFSSLEQMTNMNKSMEKLVSSSDgLTKYSELIGKEVEWEGEDGEIVS 106


                 ....*
gi 477324834 116 QTING 120
Cdd:PRK09618 107 GTVTS 111
flgD PRK12634
flagellar basal body rod modification protein; Reviewed
 39-220 1.97e-06

flagellar basal body rod modification protein; Reviewed


Pssm-ID: 183639 [Multi-domain]  Cd Length: 221  Bit Score: 47.23  E-value: 1.97e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834  39 FLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNLVGDDIMVQTTALQVSDQTI 118
Cdd:PRK12634  32 FLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDSMSSDQVLKGAALVGHNVLVPSAQVAIDATGS 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834 119 NGRATLDDACTTADLHFTDAAGDDYTVSLIPQGSSsvgpGQVDFSVNPADYG---IPPGDYDVS---VVTNTGEEEVPIE 192
Cdd:PRK12634 112 AKGVVAATSAGFVNFEITDANGAFVKQISVPASAA----GEVSFAWDGTDANgnrMAAGKYGVTatqTDTAGSKSKLSTY 187

                        170       180
                 ....*....|....*....|....*...
gi 477324834 193 VSGEVEDVRIPLDGSspVLNVAGVGEVP 220
Cdd:PRK12634 188 VQAPVDSVTIGSDGL--YLNLTGLGTSP 213
flgD PRK12812
flagellar basal body rod modification protein; Reviewed
 37-95 1.22e-05

flagellar basal body rod modification protein; Reviewed


Pssm-ID: 139245 [Multi-domain]  Cd Length: 259  Bit Score: 45.25  E-value: 1.22e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 477324834  37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAM-------MEEM--SVQANTNAVLMSNIQVMA 95
Cdd:PRK12812  47 DAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLAALEMqentnttMQKLveQMQSSMSTSALSALGKMA 114
flgD PRK05842
flagellar hook assembly protein FlgD;
37-76 3.73e-05

flagellar hook assembly protein FlgD;


Pssm-ID: 235621 [Multi-domain]  Cd Length: 295  Bit Score: 43.83  E-value: 3.73e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 477324834  37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEE 76
Cdd:PRK05842  31 NAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEE 70
flgD PRK11911
flagellar basal body rod modification protein; Provisional
 37-104 6.22e-04

flagellar basal body rod modification protein; Provisional


Pssm-ID: 138812 [Multi-domain]  Cd Length: 140  Bit Score: 39.05  E-value: 6.22e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 477324834  37 DTFLTLFVAEIQNQDPTDPTDATEyidQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALG---NLVGDDI 104
Cdd:PRK11911  29 DDFMKLFLTSLQYQDPSSPLDTNE---MMSQMAQLSLMEQVANMTTAVDKLSEQAQNSALQsavNFIGKDI 96
flgD PRK06792
flagellar basal body rod modification protein; Validated
 7-86 1.34e-03

flagellar basal body rod modification protein; Validated


Pssm-ID: 180695 [Multi-domain]  Cd Length: 190  Bit Score: 38.46  E-value: 1.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 477324834   7 NAQSPQPTATAESNNVAASDTQSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQlssMAQVAMMEEmsVQANTNAV 86
Cdd:PRK06792  24 NASVTGAQSTAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQ---TAQLSLMEQ--VQNMTKAV 98
flgD PRK12633
flagellar basal body rod modification protein; Provisional
 37-106 3.86e-03

flagellar basal body rod modification protein; Provisional


Pssm-ID: 183638 [Multi-domain]  Cd Length: 230  Bit Score: 37.65  E-value: 3.86e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 477324834  37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLssmAQVAMMEEMSVQANTNAVLMSNI---QVMALGNLVGDDIMV 106
Cdd:PRK12633  29 DQFLTLLVTQLRNQDPLNPMENAELTSQL---AQISTVEGINNLKNTMLAISGQIdvsQSMDAVSMIGKGVLM 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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