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Conserved domains on  [gi|479538633|gb|ENR12191|]
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hypothetical protein C068_00312 [Brucella sp. UK38/05]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
17kDa_Anti_2 super family cl01877
17 kDa outer membrane surface antigen; 17kDa_Anti_2 is a surface protein that is found in ...
 11-118 1.23e-52

17 kDa outer membrane surface antigen; 17kDa_Anti_2 is a surface protein that is found in several Proteobacteria species.


The actual alignment was detected with superfamily member pfam16998:

Pssm-ID: 445590  Cd Length: 111  Bit Score: 161.16  E-value: 1.23e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479538633   11 PDASAITGSVQqaEPAETDTGKLSDQSAIKNVVSALNFTQWGKKPVPWANPDTGSQGTITTIAESSTNNKLCRQFETSRE 90
Cdd:pfam16998   6 VDRSVSTGSVQ--PPAPEDTPTLSDQAAVRNAVSSADTKQLKDSPVPWANPTTGSAGVITPIAEAYANGRTCRDFLTSRH 83

                          90       100
                  ....*....|....*....|....*...
gi 479538633   91 AFDGVSIYRGETCMERGGQWTVTAFAPI 118
Cdd:pfam16998  84 AFDGIAWFQGRTCRLGQGQWQLTSFAPW 111
 
Name Accession Description Interval E-value
17kDa_Anti_2 pfam16998
17 kDa outer membrane surface antigen; 17kDa_Anti_2 is a surface protein that is found in ...
 11-118 1.23e-52

17 kDa outer membrane surface antigen; 17kDa_Anti_2 is a surface protein that is found in several Proteobacteria species.


Pssm-ID: 435702  Cd Length: 111  Bit Score: 161.16  E-value: 1.23e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479538633   11 PDASAITGSVQqaEPAETDTGKLSDQSAIKNVVSALNFTQWGKKPVPWANPDTGSQGTITTIAESSTNNKLCRQFETSRE 90
Cdd:pfam16998   6 VDRSVSTGSVQ--PPAPEDTPTLSDQAAVRNAVSSADTKQLKDSPVPWANPTTGSAGVITPIAEAYANGRTCRDFLTSRH 83

                          90       100
                  ....*....|....*....|....*...
gi 479538633   91 AFDGVSIYRGETCMERGGQWTVTAFAPI 118
Cdd:pfam16998  84 AFDGIAWFQGRTCRLGQGQWQLTSFAPW 111
LipA17 COG4520
Surface antigen [Cell wall/membrane/envelope biogenesis];
54-112 3.73e-08

Surface antigen [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443594 [Multi-domain]  Cd Length: 155  Bit Score: 48.56  E-value: 3.73e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 479538633  54 KPVPWANPDTGSQGTITTIAESSTNNKLCRQFETSREAFDGVSIYRGETCMERGGQWTV 112
Cdd:COG4520   95 QPVSWRNPDTGNSGTVTPTRTYQVGGQYCREYTHTVTIGGRTETARGTACRQPDGSWQI 153
 
Name Accession Description Interval E-value
17kDa_Anti_2 pfam16998
17 kDa outer membrane surface antigen; 17kDa_Anti_2 is a surface protein that is found in ...
 11-118 1.23e-52

17 kDa outer membrane surface antigen; 17kDa_Anti_2 is a surface protein that is found in several Proteobacteria species.


Pssm-ID: 435702  Cd Length: 111  Bit Score: 161.16  E-value: 1.23e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479538633   11 PDASAITGSVQqaEPAETDTGKLSDQSAIKNVVSALNFTQWGKKPVPWANPDTGSQGTITTIAESSTNNKLCRQFETSRE 90
Cdd:pfam16998   6 VDRSVSTGSVQ--PPAPEDTPTLSDQAAVRNAVSSADTKQLKDSPVPWANPTTGSAGVITPIAEAYANGRTCRDFLTSRH 83

                          90       100
                  ....*....|....*....|....*...
gi 479538633   91 AFDGVSIYRGETCMERGGQWTVTAFAPI 118
Cdd:pfam16998  84 AFDGIAWFQGRTCRLGQGQWQLTSFAPW 111
LipA17 COG4520
Surface antigen [Cell wall/membrane/envelope biogenesis];
54-112 3.73e-08

Surface antigen [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443594 [Multi-domain]  Cd Length: 155  Bit Score: 48.56  E-value: 3.73e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 479538633  54 KPVPWANPDTGSQGTITTIAESSTNNKLCRQFETSREAFDGVSIYRGETCMERGGQWTV 112
Cdd:COG4520   95 QPVSWRNPDTGNSGTVTPTRTYQVGGQYCREYTHTVTIGGRTETARGTACRQPDGSWQI 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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