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Conserved domains on  [gi|479755214|gb|ENT25082|]
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tol-pal system protein YbgF [Brucella suis 01-5744]

Protein Classification

tol-pal system YbgF family protein( domain architecture ID 1008078)

tol-pal system YbgF family protein is a tetratricopeptide repeat-containing protein that interacts with TolA

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|10517866
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
tol_pal_ybgF super family cl33205
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 363-476 3.33e-36

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


The actual alignment was detected with superfamily member TIGR02795:

Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 129.71  E-value: 3.33e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214  363 LYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPENMFKLGM 442
Cdd:TIGR02795   3 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGM 82

                          90       100       110
                  ....*....|....*....|....*....|....
gi 479755214  443 ALEKMDNHDVACATFAQIPQRYPKAAPAILKRVA 476
Cdd:TIGR02795  83 SLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 116
 
Name Accession Description Interval E-value
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 363-476 3.33e-36

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 129.71  E-value: 3.33e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214  363 LYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPENMFKLGM 442
Cdd:TIGR02795   3 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGM 82

                          90       100       110
                  ....*....|....*....|....*....|....
gi 479755214  443 ALEKMDNHDVACATFAQIPQRYPKAAPAILKRVA 476
Cdd:TIGR02795  83 SLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 116
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 368-479 3.28e-28

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 108.16  E-value: 3.28e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 368 YQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPENMFKLGMALEKM 447
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLEL 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 479755214 448 DNHDVACATFAQIPQRYPKAAPAILKRVADER 479
Cdd:COG1729   81 GDYDKARATLEELIKKYPDSEAAKEARARLAR 112
PRK10803 PRK10803
tol-pal system protein YbgF; Provisional
 329-476 2.04e-11

tol-pal system protein YbgF; Provisional


Pssm-ID: 182745 [Multi-domain]  Cd Length: 263  Bit Score: 64.43  E-value: 2.04e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 329 AAPQPVQQGGGGIQTGGAANDAVASLPTDDnPNSLYQAAYQY-LMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESL 407
Cdd:PRK10803 112 SGDQSGAAASATPAADAGTANAGAPVQSGD-ANTDYNAAIALvQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLN 190

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 479755214 408 YGQGRYPEAATLFIDTQRDYPDSKRAPENMFKLGMALEKMDNHDVACATFAQIPQRYP--KAAPAILKRVA 476
Cdd:PRK10803 191 YNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPgtDGAKQAQKRLN 261
YfiO pfam13525
Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards ...
 357-481 7.31e-08

Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards its N-terminal. YfiO in E.coli is one of three outer membrane lipoproteins that form a multicomponent YaeT complex in the outer membrane of Gram-negative bacteria that is involved in the targeting and folding of beta-barrel outer membrane proteins. YfiO is the only essential lipoprotein component of the complex. It is required for the proper assembly and/or targeting of outer membrane proteins to the outer membrane. Through its interactions with NlpB it maintains the functional integrity of the YaeT complex.


Pssm-ID: 433282 [Multi-domain]  Cd Length: 200  Bit Score: 52.71  E-value: 7.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214  357 DDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPEN 436
Cdd:pfam13525   1 DDPASELYEAGQTALQKGDYGDAIKKLEALDNRYPFSPYAEQAQLDLIYAYYKDADYADALAAAERFLRLYPTHPNIDYV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 479755214  437 MFKLGMAL------EKMDNHDVACAT-----FAQIPQRYP--KAAPAILKRVADERSR 481
Cdd:pfam13525  81 YYMRGLSNfaqdrdFFRSDRDPESARqafedFATLIRKYPdsEYATDAEQRITYLRER 138
BamD cd15830
BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, ...
 360-465 2.04e-06

BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.


Pssm-ID: 276939 [Multi-domain]  Cd Length: 213  Bit Score: 48.40  E-value: 2.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 360 PNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATL---FIdtqRDYPDSKRAPEN 436
Cdd:cd15830    3 AQELYEKAQTALQKGNYDGAIKYLEALDSRYPFGPYAEQAQLDLIYAYYKNADYELALASaerFI---RLYPRHPNIDYV 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 479755214 437 MFKLGMALEKMD-------------NHDV-----ACATFAQIPQRYP 465
Cdd:cd15830   80 YYMRGLSNYKLDrsflqrffpidrsDRDQsyareAFQDFKDLIQRYP 126
 
Name Accession Description Interval E-value
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 363-476 3.33e-36

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 129.71  E-value: 3.33e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214  363 LYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPENMFKLGM 442
Cdd:TIGR02795   3 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGM 82

                          90       100       110
                  ....*....|....*....|....*....|....
gi 479755214  443 ALEKMDNHDVACATFAQIPQRYPKAAPAILKRVA 476
Cdd:TIGR02795  83 SLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 116
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 368-479 3.28e-28

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 108.16  E-value: 3.28e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 368 YQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPENMFKLGMALEKM 447
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLEL 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 479755214 448 DNHDVACATFAQIPQRYPKAAPAILKRVADER 479
Cdd:COG1729   81 GDYDKARATLEELIKKYPDSEAAKEARARLAR 112
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 357-465 1.17e-11

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 64.90  E-value: 1.17e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 357 DDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPEN 436
Cdd:COG4105   29 SWDAEELYEEAKEALEKGDYEKAIKLFEELEPRYPGSPYAEQAQLMLAYAYYKQGDYEEAIAAADRFIKLYPNSPNADYA 108

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 479755214 437 MFKLGMALEKMD---NHDVACA-----TFAQIPQRYP 465
Cdd:COG4105  109 YYLRGLSYYEQSpdsDRDQTSTrkaieAFQELINRYP 145
PRK10803 PRK10803
tol-pal system protein YbgF; Provisional
 329-476 2.04e-11

tol-pal system protein YbgF; Provisional


Pssm-ID: 182745 [Multi-domain]  Cd Length: 263  Bit Score: 64.43  E-value: 2.04e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 329 AAPQPVQQGGGGIQTGGAANDAVASLPTDDnPNSLYQAAYQY-LMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESL 407
Cdd:PRK10803 112 SGDQSGAAASATPAADAGTANAGAPVQSGD-ANTDYNAAIALvQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLN 190

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 479755214 408 YGQGRYPEAATLFIDTQRDYPDSKRAPENMFKLGMALEKMDNHDVACATFAQIPQRYP--KAAPAILKRVA 476
Cdd:PRK10803 191 YNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPgtDGAKQAQKRLN 261
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 360-441 3.66e-11

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 60.01  E-value: 3.66e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 360 PNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPENMFK 439
Cdd:COG1729   30 PDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARAR 109


                 ..
gi 479755214 440 LG 441
Cdd:COG1729  110 LA 111
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 355-465 1.24e-09

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 58.33  E-value: 1.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214  355 PTDDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATL---FIDTqrdYPDSK 431
Cdd:TIGR03302  28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAadrFIRL---HPNHP 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 479755214  432 RAPENMFKLGMA-LEKMDNHD-------VACATFAQIPQRYP 465
Cdd:TIGR03302 105 DADYAYYLRGLSnYNQIDRVDrdqtaarEAFEAFQELIRRYP 146
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 357-466 4.15e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.81  E-value: 4.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 357 DDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPmtaEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSkraPEN 436
Cdd:COG4783   35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP---EARLNLGLALLKAGDYDEALALLEKALKLDPEH---PEA 108

                         90       100       110
                 ....*....|....*....|....*....|
gi 479755214 437 MFKLGMALEKMDNHDVACATFAQIPQRYPK 466
Cdd:COG4783  109 YLRLARAYRALGRPDEAIAALEKALELDPD 138
YfiO pfam13525
Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards ...
 357-481 7.31e-08

Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards its N-terminal. YfiO in E.coli is one of three outer membrane lipoproteins that form a multicomponent YaeT complex in the outer membrane of Gram-negative bacteria that is involved in the targeting and folding of beta-barrel outer membrane proteins. YfiO is the only essential lipoprotein component of the complex. It is required for the proper assembly and/or targeting of outer membrane proteins to the outer membrane. Through its interactions with NlpB it maintains the functional integrity of the YaeT complex.


Pssm-ID: 433282 [Multi-domain]  Cd Length: 200  Bit Score: 52.71  E-value: 7.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214  357 DDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPEN 436
Cdd:pfam13525   1 DDPASELYEAGQTALQKGDYGDAIKKLEALDNRYPFSPYAEQAQLDLIYAYYKDADYADALAAAERFLRLYPTHPNIDYV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 479755214  437 MFKLGMAL------EKMDNHDVACAT-----FAQIPQRYP--KAAPAILKRVADERSR 481
Cdd:pfam13525  81 YYMRGLSNfaqdrdFFRSDRDPESARqafedFATLIRKYPdsEYATDAEQRITYLRER 138
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 364-430 9.38e-07

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 46.18  E-value: 9.38e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 479755214  364 YQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDS 430
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 363-477 1.51e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 1.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 363 LYQAAYQYLMSGDYKAAEAGFREHVKRYPADPmtaEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSkraPENMFKLGM 442
Cdd:COG4783    7 LYALAQALLLAGDYDEAEALLEKALELDPDNP---EAFALLGEILLQLGDLDEAIVLLHEALELDPDE---PEARLNLGL 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 479755214 443 ALEKMDNHDVACATFAQIPQRYPKaAPAILKRVAD 477
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPE-HPEAYLRLAR 114
BamD cd15830
BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, ...
 360-465 2.04e-06

BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.


Pssm-ID: 276939 [Multi-domain]  Cd Length: 213  Bit Score: 48.40  E-value: 2.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 360 PNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATL---FIdtqRDYPDSKRAPEN 436
Cdd:cd15830    3 AQELYEKAQTALQKGNYDGAIKYLEALDSRYPFGPYAEQAQLDLIYAYYKNADYELALASaerFI---RLYPRHPNIDYV 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 479755214 437 MFKLGMALEKMD-------------NHDV-----ACATFAQIPQRYP 465
Cdd:cd15830   80 YYMRGLSNYKLDrsflqrffpidrsDRDQsyareAFQDFKDLIQRYP 126
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 358-474 2.33e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.92  E-value: 2.33e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 358 DNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPmtaEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRApenM 437
Cdd:COG4235   15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNA---DALLDLAEALLAAGDTEEAEELLERALALDPDNPEA---L 88

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 479755214 438 FKLGMALEKMDNHDVACATFAQIPQRYPKAAPAILKR 474
Cdd:COG4235   89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLE 125
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 364-435 2.42e-06

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 48.72  E-value: 2.42e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 479755214 364 YQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPE 435
Cdd:COG4105  169 LEVARYYLKRGAYVAAINRFQNVLEDYPDTPAVEEALYLLVEAYYALGRYDEAQDAAAVLGKNYPDSPYLKD 240
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
358-482 5.20e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.69  E-value: 5.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 358 DNPNSLYQAAYQYLMSGDYKAAEAGFREHVKrypADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPENm 437
Cdd:COG0457   74 DDAEALNNLGLALQALGRYEEALEDYDKALE---LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYN- 149

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 479755214 438 fkLGMALEKMDNHDVACATFAQIPQRYPKAAPAILKRVADERSRA 482
Cdd:COG0457  150 --LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
358-474 6.08e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.69  E-value: 6.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 358 DNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRypaDPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRApenM 437
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL---DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA---L 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 479755214 438 FKLGMALEKMDNHDVACATFAQIPQRYPKAAPAILKR 474
Cdd:COG0457   80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNL 116
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 327-467 1.27e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 1.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 327 LNAAPQPVQQGGGGIQTGGAANDAVASLPTDDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPmtaEARFWLGES 406
Cdd:COG5010   21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNP---ELYYNLALL 97

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 479755214 407 LYGQGRYPEAATLFIDTQRDYPDSKRAPENmfkLGMALEKMDNHDVACATFAQIPQRYPKA 467
Cdd:COG5010   98 YSRSGDKDEAKEYYEKALALSPDNPNAYSN---LAALLLSLGQDDEAKAALQRALGTSPLK 155
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 358-470 1.92e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 47.30  E-value: 1.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 358 DNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADpmtAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSkraPENM 437
Cdd:COG3914  110 DNAEALFNLGNLLLALGRLEEALAALRRALALNPDF---AEAYLNLGEALRRLGRLEEAIAALRRALELDPDN---AEAL 183

                         90       100       110
                 ....*....|....*....|....*....|...
gi 479755214 438 FKLGMALEKMDNHDVACATFAQIPQRYPKAAPA 470
Cdd:COG3914  184 NNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 324-472 2.07e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.91  E-value: 2.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 324 GETLNAAPQPVQQGGGGIQTGGAANDAVASLPTDDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADpmtAEARFWL 403
Cdd:COG3914   42 GLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDN---AEALFNL 118

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 479755214 404 GESLYGQGRYPEAATLFIDTQRDYPDSkraPENMFKLGMALEKMDNHDVACATFAQIPQRYPKAAPAIL 472
Cdd:COG3914  119 GNLLLALGRLEEALAALRRALALNPDF---AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
358-474 2.18e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.77  E-value: 2.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 358 DNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADpmtAEARFWLGESLYGQGRYPEAATLF---IDTQRDYPDSkrap 434
Cdd:COG0457   40 DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD---AEALNNLGLALQALGRYEEALEDYdkaLELDPDDAEA---- 112

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 479755214 435 enMFKLGMALEKMDNHDVACATFAQIPQRYPKAAPAILKR 474
Cdd:COG0457  113 --LYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
370-467 9.75e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 9.75e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 370 YLMSGDYKAAEAGFREHVKRypaDPMTAEARFWLGESLYGQGRYPEAATLfidtQRDYPDSKRAPENMFKLGMALEKMDN 449
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALEL---DPDNADALNNLGLLLLEQGRYDEAIAL----EKALKLDPNNAEALLNLAELLLELGD 74

                         90
                 ....*....|....*...
gi 479755214 450 HDVACATFAQIPQRYPKA 467
Cdd:COG3063   75 YDEALAYLERALELDPSA 92
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 364-473 1.51e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 1.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 364 YQAAYQYLMSGDYKAAEAGFREHVKrypADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRApenMFKLGMA 443
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEALE---LDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA---LLELAQD 85

                         90       100       110
                 ....*....|....*....|....*....|
gi 479755214 444 LEKMDNHDVACATFAQIPQRYPKAAPAILK 473
Cdd:COG2956   86 YLKAGLLDRAEELLEKLLELDPDDAEALRL 115
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
358-483 1.66e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 43.33  E-value: 1.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 358 DNPNSLYQAAYQYLMSGDYKAAEAGFREHVKR-YPADPmtaEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRaPEN 436
Cdd:COG4700   87 DTVQNRVRLADALLELGRYDEAIELYEEALTGiFADDP---HILLGLAQALFELGRYAEALETLEKLIAKNPDFKS-SDA 162

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 479755214 437 MFKLGMALEKMDNHDVACATFAQIPQRYPKAAP----AILKRVADERSRAK 483
Cdd:COG4700  163 HLLYARALEALGDLEAAEAELEALARRYSGPEAryryAKFLARQGRTAEAK 213
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 356-471 2.48e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 2.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 356 TDDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKrypADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRApe 435
Cdd:COG2956  140 GPENAHAYCELAELYLEQGDYDEAIEALEKALK---LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA-- 214

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 479755214 436 nMFKLGMALEKMDNHDVACATFAQIPQRYPKAAPAI 471
Cdd:COG2956  215 -LPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 370-483 5.43e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 5.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214  370 YLMSGDYKAAEAGFREHVKRYPadpmTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRApenMFKLGMALEKMDN 449
Cdd:TIGR02917 713 YLRQKDYPAAIQAYRKALKRAP----SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL---RTALAELYLAQKD 785

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 479755214  450 HDVACATFAQIPQRYPKAAPAI--LKRVADERSRAK 483
Cdd:TIGR02917 786 YDKAIKHYQTVVKKAPDNAVVLnnLAWLYLELKDPR 821
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
292-474 9.47e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 40.67  E-value: 9.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 292 AIGSAASQGGPARGEPPQTLGSIRFDTNGNVIGETLNAAPQPVQQGGGGIQTGGAANDAVASLPTDDNPNSLYQAAYQYL 371
Cdd:COG4785    5 ALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYD 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 372 MSGDYKAAEAGFREHVKRYPADpmtAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRApenMFKLGMALEKMDNHD 451
Cdd:COG4785   85 SLGDYDLAIADFDQALELDPDL---AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA---YLNRGIALYYLGRYE 158

                        170       180
                 ....*....|....*....|...
gi 479755214 452 VACATFAQIPQRYPKAAPAILKR 474
Cdd:COG4785  159 LAIADLEKALELDPNDPERALWL 181
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 358-423 1.27e-03

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 37.62  E-value: 1.27e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 479755214  358 DNPNSLYQAAYQYLMSGDYKAAeagfREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDT 423
Cdd:pfam12895  21 ESPEDAYLLAQCLFLNGQYKRA----YELLRKAKLNGSSLGCRYLFAQCLLKLKKYDEALDALGKA 82
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
358-448 1.49e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 40.28  E-value: 1.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 358 DNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRypaDPMTAEARFWLGESLYGQGRYPEAAtlfIDTQRDYPDSKRAPENM 437
Cdd:COG4785  105 DLAEAYNNRGLAYLLLGDYDAALEDFDRALEL---DPDYAYAYLNRGIALYYLGRYELAI---ADLEKALELDPNDPERA 178

                         90
                 ....*....|.
gi 479755214 438 FKLGMALEKMD 448
Cdd:COG4785  179 LWLYLAERKLD 189
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 358-430 1.68e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.63  E-value: 1.68e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 479755214 358 DNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPmtaEARFWLGESLYGQGRYPEAATLFIDTQRDYPDS 430
Cdd:COG4783   70 DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHP---EAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 356-474 1.73e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 1.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 356 TDDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPmtaEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRApe 435
Cdd:COG2956   72 DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDA---EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA-- 146

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 479755214 436 nMFKLGMALEKMDNHDVACATFAQIPQRYPKAAPAILKR 474
Cdd:COG2956  147 -YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLL 184
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
358-432 3.06e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.07  E-value: 3.06e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 479755214 358 DNPNSLYQAAYQYLMSGDYKAAEAgFREHVKRYPADPmtaEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKR 432
Cdd:COG3063   24 DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNA---EALLNLAELLLELGDYDEALAYLERALELDPSALR 94
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 359-466 3.90e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 39.09  E-value: 3.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 359 NPNS------LYQAAY-QYLMSGDY-------KAAEAGFREHVKRYPADPMTAEARFWLGESL--------------YGQ 410
Cdd:COG4105   99 YPNSpnadyaYYLRGLsYYEQSPDSdrdqtstRKAIEAFQELINRYPDSEYAEDAKKRIDELRdklarkelevaryyLKR 178

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 479755214 411 GRYPEAATLFIDTQRDYPDSKRAPENMFKLGMALEKMDNHDVACATFAQIPQRYPK 466
Cdd:COG4105  179 GAYVAAINRFQNVLEDYPDTPAVEEALYLLVEAYYALGRYDEAQDAAAVLGKNYPD 234
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 378-470 4.25e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.29  E-value: 4.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 479755214 378 AAEAGFREHVKRYPADpmtAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSkraPENMFKLGMALEKMDNHDVACATF 457
Cdd:COG4235    1 EAIARLRQALAANPND---AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN---ADALLDLAEALLAAGDTEEAEELL 74

                         90
                 ....*....|...
gi 479755214 458 AQIPQRYPKAAPA 470
Cdd:COG4235   75 ERALALDPDNPEA 87
TPR_6 pfam13174
Tetratricopeptide repeat;
435-466 4.88e-03

Tetratricopeptide repeat;


Pssm-ID: 463800 [Multi-domain]  Cd Length: 33  Bit Score: 34.75  E-value: 4.88e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 479755214  435 ENMFKLGMALEKMDNHDVACATFAQIPQRYPK 466
Cdd:pfam13174   1 DALLKLALAYLELGDTDEAKEALERLIKKYPD 32
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
363-435 5.08e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 38.71  E-value: 5.08e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 479755214 363 LYQAAYQYLmsGDYKAAEAGFREHVKRYPadpmTAEARFWLGESLYGQGRYPEAATLFIDTQRdypDSKRAPE 435
Cdd:COG4700  165 LYARALEAL--GDLEAAEAELEALARRYS----GPEARYRYAKFLARQGRTAEAKELLEEILD---EAKHMPK 228
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 403-468 9.05e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 35.00  E-value: 9.05e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 479755214  403 LGESLYGQGRYPEAATLFIDTQRDYPDSKRAPENMFKLGMALEKMDNHDVACATFAQIPQRYPKAA 468
Cdd:pfam13432   3 LARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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