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Conserved domains on  [gi|486463973|gb|EOE08297|]
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general stress protein [Enterococcus faecalis EnGen0058]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
3-96 5.95e-10

Gas vesicle protein YhaH [General function prediction only];


:

Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 54.21  E-value: 5.95e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486463973   3 KKGGFFLGAVIGGTAAAVAALLLAPKSGKELRDDLSNQTDDLKNKAQDYTDYAVQKGTELTEIAKQKAGVLSDQASDLAG 82
Cdd:COG4980    2 KSKNFLLGLLVGAAVGAAAGLLFAPKSGKETRKKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIE 81

                         90
                 ....*....|....
gi 486463973  83 SVKEKTKDSLDKAQ 96
Cdd:COG4980   82 ELKEEVEPKIEELK 95
GvpP super family cl44178
Gas vesicle protein YhaH [General function prediction only];
122-193 5.04e-03

Gas vesicle protein YhaH [General function prediction only];


The actual alignment was detected with superfamily member COG4980:

Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 35.33  E-value: 5.04e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 486463973 122 DDAQDHAEDLGEIAEDAAEDIYIDVKDSAAAAKETVSAGVDEAKETTKDVPEKAAEAKEDVKDAAKDVKKRI 193
Cdd:COG4980   34 KKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQKEV 105
 
Name Accession Description Interval E-value
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
3-96 5.95e-10

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 54.21  E-value: 5.95e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486463973   3 KKGGFFLGAVIGGTAAAVAALLLAPKSGKELRDDLSNQTDDLKNKAQDYTDYAVQKGTELTEIAKQKAGVLSDQASDLAG 82
Cdd:COG4980    2 KSKNFLLGLLVGAAVGAAAGLLFAPKSGKETRKKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIE 81

                         90
                 ....*....|....
gi 486463973  83 SVKEKTKDSLDKAQ 96
Cdd:COG4980   82 ELKEEVEPKIEELK 95
YtxH pfam12732
YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are ...
 5-78 6.89e-07

YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.


Pssm-ID: 432750 [Multi-domain]  Cd Length: 71  Bit Score: 44.90  E-value: 6.89e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 486463973    5 GGFFLGAVIGGTAAAVAAlllaPKSGKELRDDLSNQTDDLKNKAQDYTDYAVQKGTELTEIAKQKAGVLSDQAS 78
Cdd:pfam12732   2 LGLLIGAAIGAAAGLLLA----PKSGKETRKDLKDKAEDLKDKAKDLAEEAKEKAEDLKEKVKEKADELKEKVK 71
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
122-193 5.04e-03

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 35.33  E-value: 5.04e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 486463973 122 DDAQDHAEDLGEIAEDAAEDIYIDVKDSAAAAKETVSAGVDEAKETTKDVPEKAAEAKEDVKDAAKDVKKRI 193
Cdd:COG4980   34 KKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQKEV 105
 
Name Accession Description Interval E-value
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
3-96 5.95e-10

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 54.21  E-value: 5.95e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486463973   3 KKGGFFLGAVIGGTAAAVAALLLAPKSGKELRDDLSNQTDDLKNKAQDYTDYAVQKGTELTEIAKQKAGVLSDQASDLAG 82
Cdd:COG4980    2 KSKNFLLGLLVGAAVGAAAGLLFAPKSGKETRKKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIE 81

                         90
                 ....*....|....
gi 486463973  83 SVKEKTKDSLDKAQ 96
Cdd:COG4980   82 ELKEEVEPKIEELK 95
YtxH pfam12732
YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are ...
 5-78 6.89e-07

YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.


Pssm-ID: 432750 [Multi-domain]  Cd Length: 71  Bit Score: 44.90  E-value: 6.89e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 486463973    5 GGFFLGAVIGGTAAAVAAlllaPKSGKELRDDLSNQTDDLKNKAQDYTDYAVQKGTELTEIAKQKAGVLSDQAS 78
Cdd:pfam12732   2 LGLLIGAAIGAAAGLLLA----PKSGKETRKDLKDKAEDLKDKAKDLAEEAKEKAEDLKEKVKEKADELKEKVK 71
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
122-193 5.04e-03

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 35.33  E-value: 5.04e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 486463973 122 DDAQDHAEDLGEIAEDAAEDIYIDVKDSAAAAKETVSAGVDEAKETTKDVPEKAAEAKEDVKDAAKDVKKRI 193
Cdd:COG4980   34 KKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQKEV 105
Apolipoprotein pfam01442
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a ...
 28-168 6.16e-03

Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.


Pssm-ID: 460211 [Multi-domain]  Cd Length: 175  Bit Score: 36.09  E-value: 6.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486463973   28 KSGKELRDDLSNQTDDLKNKAQDYTDYAVQKGTELTEIAKQKagvLSDQASDLAGSVKEKTKDSLDKAQGVSGDMLDNFK 107
Cdd:pfam01442  33 KETEALRERLQKDLEEVRAKLEPYLEELQAKLGQNVEELRQR---LEPYTEELRKRLNADAEELQEKLAPYGEELRERLE 109

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 486463973  108 KQTGDLSDQFKKAADDAQD----HAEDLGEIAEDAAEDIYIDVKDSAAAAKETVSAGVDEAKETT 168
Cdd:pfam01442 110 QNVDALRARLAPYAEELRQklaeRLEELKESLAPYAEEVQAQLSQRLQELREKLEPQAEDLREKL 174
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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