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Conserved domains on  [gi|487151042|gb|EOK70613|]
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hypothetical protein SEM_00519 [Enterococcus faecium EnGen0129]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
pilin_ComGG_2 NF041014
competence type IV pilus minor pilin ComGG; ComGG is an especially variable protein of ...
 35-106 4.11e-14

competence type IV pilus minor pilin ComGG; ComGG is an especially variable protein of ComG-like DNA binding/uptake type IV pilus formation systems. This HMM identifies ComGG proteins as found in Streptococcus pneumoniae, not Bacillus subtilis.


:

Pssm-ID: 468943  Cd Length: 101  Bit Score: 63.04  E-value: 4.11e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 487151042  35 ALESYRLSMDLNIRIKNYYIAKIMKQMALSEQSTLAESSE-GVFYYTTGSVTYQWVQQSLFLEVEVSP---FIFRF 106
Cdd:NF041014  25 YLERVQATQRLTQATKEYYQAKLMAEMFLDEAKQDSGEKKqGELSFNQGTVTYEKKNEQLNVTVTLDKgqsYTYQF 100
 
Name Accession Description Interval E-value
pilin_ComGG_2 NF041014
competence type IV pilus minor pilin ComGG; ComGG is an especially variable protein of ...
 35-106 4.11e-14

competence type IV pilus minor pilin ComGG; ComGG is an especially variable protein of ComG-like DNA binding/uptake type IV pilus formation systems. This HMM identifies ComGG proteins as found in Streptococcus pneumoniae, not Bacillus subtilis.


Pssm-ID: 468943  Cd Length: 101  Bit Score: 63.04  E-value: 4.11e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 487151042  35 ALESYRLSMDLNIRIKNYYIAKIMKQMALSEQSTLAESSE-GVFYYTTGSVTYQWVQQSLFLEVEVSP---FIFRF 106
Cdd:NF041014  25 YLERVQATQRLTQATKEYYQAKLMAEMFLDEAKQDSGEKKqGELSFNQGTVTYEKKNEQLNVTVTLDKgqsYTYQF 100
 
Name Accession Description Interval E-value
pilin_ComGG_2 NF041014
competence type IV pilus minor pilin ComGG; ComGG is an especially variable protein of ...
 35-106 4.11e-14

competence type IV pilus minor pilin ComGG; ComGG is an especially variable protein of ComG-like DNA binding/uptake type IV pilus formation systems. This HMM identifies ComGG proteins as found in Streptococcus pneumoniae, not Bacillus subtilis.


Pssm-ID: 468943  Cd Length: 101  Bit Score: 63.04  E-value: 4.11e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 487151042  35 ALESYRLSMDLNIRIKNYYIAKIMKQMALSEQSTLAESSE-GVFYYTTGSVTYQWVQQSLFLEVEVSP---FIFRF 106
Cdd:NF041014  25 YLERVQATQRLTQATKEYYQAKLMAEMFLDEAKQDSGEKKqGELSFNQGTVTYEKKNEQLNVTVTLDKgqsYTYQF 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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