NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|511010276|gb|EPB91501|]
View 

hypothetical protein HMPREF1544_01632 [Mucor circinelloides f. circinelloides 1006PhL]

Protein Classification

RTP1/Tango6 family protein( domain architecture ID 10563852)

RTP1/Tango6 family protein similar to Saccharomyces cerevisiae RNA polymerase II assembly factor RTP1 that is required for the cytoplasmic assembly and the nuclear import of RNA polymerase II

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RTP1_C1 pfam10363
Required for nuclear transport of RNA pol II C-terminus 1; This domain is found towards the ...
 723-834 9.09e-38

Required for nuclear transport of RNA pol II C-terminus 1; This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localization of RNA polymerase II. This family is found in association with pfam10304.


:

Pssm-ID: 463059  Cd Length: 112  Bit Score: 136.83  E-value: 9.09e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511010276  723 YRDAMKSLQDDLLPIRAHGMGMLKEMALAKDPlvSSGEGLDQLLDIFVRLVQDEDSYIYLNAVKGLSAMTDAYGNQIIKK 802
Cdd:pfam10363   1 LQEALKDLNDPLVPVRAHGLVLLRKLIEKKDP--SPVIDIPKILDLFLSNLKDEDSYVYLNAIKGLAALADRYPDEVLPT 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 511010276  803 LGDIYSD--DKQKLDNRLRIGEALLQTIQRCGDA 834
Cdd:pfam10363  79 LLEEYGDlnEKRSLDERLKVGEALLRVIQRLGEL 112
RTP1_C2 pfam10304
Required for nuclear transport of RNA pol II C-terminus 2; This domain is found towards the ...
 928-961 8.30e-09

Required for nuclear transport of RNA pol II C-terminus 2; This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localization of RNA polymerase II. This family is found in association with pfam10363.


:

Pssm-ID: 431206  Cd Length: 34  Bit Score: 51.64  E-value: 8.30e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 511010276  928 SLRRTYRTLRYIEETDPDELTRYQARVALSDLDA 961
Cdd:pfam10304   1 NLEDLYRTLKYVEDTDTDDLVREHARDVLEELEA 34
 
Name Accession Description Interval E-value
RTP1_C1 pfam10363
Required for nuclear transport of RNA pol II C-terminus 1; This domain is found towards the ...
 723-834 9.09e-38

Required for nuclear transport of RNA pol II C-terminus 1; This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localization of RNA polymerase II. This family is found in association with pfam10304.


Pssm-ID: 463059  Cd Length: 112  Bit Score: 136.83  E-value: 9.09e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511010276  723 YRDAMKSLQDDLLPIRAHGMGMLKEMALAKDPlvSSGEGLDQLLDIFVRLVQDEDSYIYLNAVKGLSAMTDAYGNQIIKK 802
Cdd:pfam10363   1 LQEALKDLNDPLVPVRAHGLVLLRKLIEKKDP--SPVIDIPKILDLFLSNLKDEDSYVYLNAIKGLAALADRYPDEVLPT 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 511010276  803 LGDIYSD--DKQKLDNRLRIGEALLQTIQRCGDA 834
Cdd:pfam10363  79 LLEEYGDlnEKRSLDERLKVGEALLRVIQRLGEL 112
RTP1_C2 pfam10304
Required for nuclear transport of RNA pol II C-terminus 2; This domain is found towards the ...
 928-961 8.30e-09

Required for nuclear transport of RNA pol II C-terminus 2; This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localization of RNA polymerase II. This family is found in association with pfam10363.


Pssm-ID: 431206  Cd Length: 34  Bit Score: 51.64  E-value: 8.30e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 511010276  928 SLRRTYRTLRYIEETDPDELTRYQARVALSDLDA 961
Cdd:pfam10304   1 NLEDLYRTLKYVEDTDTDDLVREHARDVLEELEA 34
 
Name Accession Description Interval E-value
RTP1_C1 pfam10363
Required for nuclear transport of RNA pol II C-terminus 1; This domain is found towards the ...
 723-834 9.09e-38

Required for nuclear transport of RNA pol II C-terminus 1; This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localization of RNA polymerase II. This family is found in association with pfam10304.


Pssm-ID: 463059  Cd Length: 112  Bit Score: 136.83  E-value: 9.09e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511010276  723 YRDAMKSLQDDLLPIRAHGMGMLKEMALAKDPlvSSGEGLDQLLDIFVRLVQDEDSYIYLNAVKGLSAMTDAYGNQIIKK 802
Cdd:pfam10363   1 LQEALKDLNDPLVPVRAHGLVLLRKLIEKKDP--SPVIDIPKILDLFLSNLKDEDSYVYLNAIKGLAALADRYPDEVLPT 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 511010276  803 LGDIYSD--DKQKLDNRLRIGEALLQTIQRCGDA 834
Cdd:pfam10363  79 LLEEYGDlnEKRSLDERLKVGEALLRVIQRLGEL 112
RTP1_C2 pfam10304
Required for nuclear transport of RNA pol II C-terminus 2; This domain is found towards the ...
 928-961 8.30e-09

Required for nuclear transport of RNA pol II C-terminus 2; This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localization of RNA polymerase II. This family is found in association with pfam10363.


Pssm-ID: 431206  Cd Length: 34  Bit Score: 51.64  E-value: 8.30e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 511010276  928 SLRRTYRTLRYIEETDPDELTRYQARVALSDLDA 961
Cdd:pfam10304   1 NLEDLYRTLKYVEDTDTDDLVREHARDVLEELEA 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH