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Conserved domains on  [gi|535224956|gb|EQT68634|]
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hypothetical protein G841_04909 [Escherichia coli HVH 189 (4-3220125)]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6364 super family cl45279
Family of unknown function (DUF6364); This family of uncharacterized proteins is found in ...
 1-47 6.32e-07

Family of unknown function (DUF6364); This family of uncharacterized proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length and they seem to belong to the toxin-antitoxin system. They are likely to contain a ribbon-helix-helix DNA-binding motif.


The actual alignment was detected with superfamily member pfam19891:

Pssm-ID: 466224  Cd Length: 78  Bit Score: 46.44  E-value: 6.32e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 535224956    1 MTVKqLNLRFDETIIARLKSTAKQEGVSVNALVERYL---INGLDNESSD 47
Cdd:pfam19891   1 MKTK-LTLRLDKDVIEKAKAYAKQNGTSLSELVENYLkslTSKLEIEISP 49
 
Name Accession Description Interval E-value
DUF6364 pfam19891
Family of unknown function (DUF6364); This family of uncharacterized proteins is found in ...
 1-47 6.32e-07

Family of unknown function (DUF6364); This family of uncharacterized proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length and they seem to belong to the toxin-antitoxin system. They are likely to contain a ribbon-helix-helix DNA-binding motif.


Pssm-ID: 466224  Cd Length: 78  Bit Score: 46.44  E-value: 6.32e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 535224956    1 MTVKqLNLRFDETIIARLKSTAKQEGVSVNALVERYL---INGLDNESSD 47
Cdd:pfam19891   1 MKTK-LTLRLDKDVIEKAKAYAKQNGTSLSELVENYLkslTSKLEIEISP 49
 
Name Accession Description Interval E-value
DUF6364 pfam19891
Family of unknown function (DUF6364); This family of uncharacterized proteins is found in ...
 1-47 6.32e-07

Family of unknown function (DUF6364); This family of uncharacterized proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length and they seem to belong to the toxin-antitoxin system. They are likely to contain a ribbon-helix-helix DNA-binding motif.


Pssm-ID: 466224  Cd Length: 78  Bit Score: 46.44  E-value: 6.32e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 535224956    1 MTVKqLNLRFDETIIARLKSTAKQEGVSVNALVERYL---INGLDNESSD 47
Cdd:pfam19891   1 MKTK-LTLRLDKDVIEKAKAYAKQNGTSLSELVENYLkslTSKLEIEISP 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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