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Conserved domains on  [gi|549581217|gb|ERN85943|]
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fimbrial chaperone protein FimC [Salmonella enterica subsp. enterica serovar Kentucky str. 20793]

Protein Classification

type 1 fimbriae chaperone FimC( domain architecture ID 11487688)

type 1 fimbriae chaperone FimC is part of the fimbrial operon and required for the biogenesis of type 1 fimbriae

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15195 PRK15195
molecular chaperone FimC;
8-236 6.14e-165

molecular chaperone FimC;


:

Pssm-ID: 185117 [Multi-domain]  Cd Length: 229  Bit Score: 454.32  E-value: 6.14e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217   8 MLNSIKLGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENSAGQKEKTFIVTPPLF 87
Cdd:PRK15195   1 MMTKIKLGMIIIFYLIISASVHAAGGIALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  88 VSEPKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSR 167
Cdd:PRK15195  81 VSEPKSENTLRIIYAGPPLAADRESLFWMNVKAIPSVDKNALEGRNVLQLAILSRIKLFVRPINLQELPEEAPDTLKFSR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 549581217 168 VGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTGAQGSVTFQTVNDYGALTSATTASL 236
Cdd:PRK15195 161 SGNHLKVHNPSPYYVTLVNLQVGSQKLGNAMIAPKVNSQIPLPSGVQGKLKFQTVNDYGAVTPAREVNL 229
 
Name Accession Description Interval E-value
PRK15195 PRK15195
molecular chaperone FimC;
8-236 6.14e-165

molecular chaperone FimC;


Pssm-ID: 185117 [Multi-domain]  Cd Length: 229  Bit Score: 454.32  E-value: 6.14e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217   8 MLNSIKLGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENSAGQKEKTFIVTPPLF 87
Cdd:PRK15195   1 MMTKIKLGMIIIFYLIISASVHAAGGIALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  88 VSEPKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSR 167
Cdd:PRK15195  81 VSEPKSENTLRIIYAGPPLAADRESLFWMNVKAIPSVDKNALEGRNVLQLAILSRIKLFVRPINLQELPEEAPDTLKFSR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 549581217 168 VGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTGAQGSVTFQTVNDYGALTSATTASL 236
Cdd:PRK15195 161 SGNHLKVHNPSPYYVTLVNLQVGSQKLGNAMIAPKVNSQIPLPSGVQGKLKFQTVNDYGAVTPAREVNL 229
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
8-234 4.06e-80

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 239.89  E-value: 4.06e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217   8 MLNSIKLGFIVLLTLFTSLnvQAAGGIALGATRVIYPSAAKQTSLAISNSDTQErYLVNSWIEN-----SAGQKEKTFIV 82
Cdd:COG3121    1 MKRLLRLLLLALLLLLASA--AAAAGISISPTRVIYPAGDKEASLTLTNTGDTP-YLVQSWVDDwdqdaGPDKATAPFVV 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  83 TPPLFVSEPKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHiEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTL 162
Cdd:COG3121   78 TPPLFRLEPGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKDASE-EGKNTLQIALRTRIKLFYRPAGLKGSPEDAAEK 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217 163 LKFSRVGNHLKITNPSAYYLTLVNISVGAK----KIDNVMIAPKSDMQIPLPTGA----QGSVTFQTVNDYGALTSATTA 234
Cdd:COG3121  157 LTWSLVGNGLTVTNPGPYYVTLSDLSLGAGgkklKKGLGMVLPGSTRRWPLPAGAslaaGGKVTWATINDYGGAVPLEAT 236
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 34-153 2.16e-47

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 152.74  E-value: 2.16e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217   34 IALGATRVIYPSAAKQTSLAISNSDTQeRYLVNSWIENSAGQKEKT-----FIVTPPLFVSEPKSENTLRIIYAGQPLPG 108
Cdd:pfam00345   1 VVLGGTRVIYPAGEKEASVTVSNTGDN-PYLVQSWVDDGNEEGTDEkakapFIVTPPLFRLEPGQEQVLRIYTTGPPLPT 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 549581217  109 DRESLFWMNVKAIPSVDKSHiEGKNVLQLAILSRIKLFVRPANLP 153
Cdd:pfam00345  80 DRESLFWLNVLEIPPKDKPK-GGQNGLQLALRSRIKLFYRPAGLA 123
 
Name Accession Description Interval E-value
PRK15195 PRK15195
molecular chaperone FimC;
8-236 6.14e-165

molecular chaperone FimC;


Pssm-ID: 185117 [Multi-domain]  Cd Length: 229  Bit Score: 454.32  E-value: 6.14e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217   8 MLNSIKLGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENSAGQKEKTFIVTPPLF 87
Cdd:PRK15195   1 MMTKIKLGMIIIFYLIISASVHAAGGIALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  88 VSEPKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSR 167
Cdd:PRK15195  81 VSEPKSENTLRIIYAGPPLAADRESLFWMNVKAIPSVDKNALEGRNVLQLAILSRIKLFVRPINLQELPEEAPDTLKFSR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 549581217 168 VGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTGAQGSVTFQTVNDYGALTSATTASL 236
Cdd:PRK15195 161 SGNHLKVHNPSPYYVTLVNLQVGSQKLGNAMIAPKVNSQIPLPSGVQGKLKFQTVNDYGAVTPAREVNL 229
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
8-234 4.06e-80

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 239.89  E-value: 4.06e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217   8 MLNSIKLGFIVLLTLFTSLnvQAAGGIALGATRVIYPSAAKQTSLAISNSDTQErYLVNSWIEN-----SAGQKEKTFIV 82
Cdd:COG3121    1 MKRLLRLLLLALLLLLASA--AAAAGISISPTRVIYPAGDKEASLTLTNTGDTP-YLVQSWVDDwdqdaGPDKATAPFVV 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  83 TPPLFVSEPKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHiEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTL 162
Cdd:COG3121   78 TPPLFRLEPGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKDASE-EGKNTLQIALRTRIKLFYRPAGLKGSPEDAAEK 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217 163 LKFSRVGNHLKITNPSAYYLTLVNISVGAK----KIDNVMIAPKSDMQIPLPTGA----QGSVTFQTVNDYGALTSATTA 234
Cdd:COG3121  157 LTWSLVGNGLTVTNPGPYYVTLSDLSLGAGgkklKKGLGMVLPGSTRRWPLPAGAslaaGGKVTWATINDYGGAVPLEAT 236
PRK15188 PRK15188
fimbrial chaperone protein BcfB; Provisional
 16-235 1.06e-64

fimbrial chaperone protein BcfB; Provisional


Pssm-ID: 185110 [Multi-domain]  Cd Length: 228  Bit Score: 200.76  E-value: 1.06e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  16 FIVLLTLFTSLNVQ---AAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENSAGQKEKTFIVTPPLFVSEPK 92
Cdd:PRK15188   8 FLRLLLLLSAAGLSfaaQAGGIALGATRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPK 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  93 SENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHIEGkNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSRVGNHL 172
Cdd:PRK15188  88 KENILRIMYVGPSLPTDRESVFYLNSKAIPSVDKNKLTG-NSLQIATQSVIKLFIRPKNLAEAPAHAPSTLRCRNERGQL 166

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 549581217 173 KITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPlptGAQGSVTFQTVNDYGALTSATTAS 235
Cdd:PRK15188 167 TITNPSPYYVSMVELYSAGKKLPNTMVPPKGAITLP---ATPGQVSLRTVNDFGATTPARVCP 226
PRK15208 PRK15208
molecular chaperone LpfB;
13-227 7.86e-61

molecular chaperone LpfB;


Pssm-ID: 237925 [Multi-domain]  Cd Length: 228  Bit Score: 190.89  E-value: 7.86e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  13 KLGFIVLLTLFTSLNVqAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENSAGQKEKTFIVTPPLFVSEPK 92
Cdd:PRK15208   3 LISFTALALALIAQNS-FAGGVALSSTRVIYDGSKKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  93 SENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHiEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSRVGNHL 172
Cdd:PRK15208  82 KNNVLRIVNITNTLPQDRESVYWINVKAIPAKSEDA-ENKNVLQIAVRTRLKLFYRPAGLKGNSMDAWNKLRFTRAGNQI 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 549581217 173 KITNPSAYYLTLVNISVGAKKIDNV-MIAPKSDMQIPLP--TGAQGSVTFQTVNDYGA 227
Cdd:PRK15208 161 KVENPSAFNLTFNQFYANGRDIEKAgMVPAKGSLNIELPagTGKVSEVKYNIINDFGT 218
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 34-153 2.16e-47

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 152.74  E-value: 2.16e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217   34 IALGATRVIYPSAAKQTSLAISNSDTQeRYLVNSWIENSAGQKEKT-----FIVTPPLFVSEPKSENTLRIIYAGQPLPG 108
Cdd:pfam00345   1 VVLGGTRVIYPAGEKEASVTVSNTGDN-PYLVQSWVDDGNEEGTDEkakapFIVTPPLFRLEPGQEQVLRIYTTGPPLPT 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 549581217  109 DRESLFWMNVKAIPSVDKSHiEGKNVLQLAILSRIKLFVRPANLP 153
Cdd:pfam00345  80 DRESLFWLNVLEIPPKDKPK-GGQNGLQLALRSRIKLFYRPAGLA 123
lfpB PRK15290
fimbrial chaperone;
5-236 3.04e-47

fimbrial chaperone;


Pssm-ID: 237934 [Multi-domain]  Cd Length: 243  Bit Score: 156.30  E-value: 3.04e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217   5 FFTMLNSIKLGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIE--NSAGQKEKTFIV 82
Cdd:PRK15290  10 LFKTTVSCKLFTAIILSVFLGQPALTYAGVVIGGTRVVYLSNNPDKSISVFSKEEKIPYLIQAWVDpfNKEDKSKAPFTV 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  83 TPPLFVSEPKSENTLRIIY-AGQPLPGDRESLFWMNVKAIPSVDKShiEGKNVLQLAILSRIKLFVRPANLPQTPEDAPT 161
Cdd:PRK15290  90 IPPVSRLEPSQEKVLRIIHtKGVSLPDDRESVFWLNIKNIPPSASN--KATNSLEIAVKTRIKLFWRPASIRLIPEDAAP 167

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 549581217 162 LLKFSRVGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTG-AQGSVTFQTVNDYGALTSATTASL 236
Cdd:PRK15290 168 KVKWRREGRNLIAENPNPIHISVMDVIVDGHDVPLNMIRPFETLTLPLPANsAGGQMTWRFINDYGAVSDPIKMTL 243
PRK15295 PRK15295
fimbrial assembly chaperone;
13-236 4.30e-46

fimbrial assembly chaperone;


Pssm-ID: 237936 [Multi-domain]  Cd Length: 226  Bit Score: 152.79  E-value: 4.30e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  13 KLGFIVLLTLFTSLNVQAAggIALGATRVIYPSAAKQTSLAISNSDtQERYLVNSWIE--NSAGQKEKTFIVTPPLFVSE 90
Cdd:PRK15295   2 HIKKSVLVVLLTSHVAHAS--IVVGGTRLVFDGNNDESSINVENKD-SKANLVQSWLSvvDPQVTNKQAFIITPPLFRLD 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  91 PKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDksHIEGKNVLQLAILSRIKLFVRPANLP-QTPEDAPTLLKFSRVG 169
Cdd:PRK15295  79 AGQKNSIRVIRSGAPLPADRESMYWLNIKGIPSID--DNASANRVEISINTQIKLIYRPPALTkSTPDSQSQQLKWQTAG 156

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217 170 NHLKITNPSAYYLTLVNISVGAKKIDNV-MIAPKSDMQIPLPTGAQ--GSVTFQTVNDYGALTSATTASL 236
Cdd:PRK15295 157 DVITVNNPTPYYMNFASVTLNSHEVKSAtFVPPKSSASFKLGSTAAphGTVTWRLISDYGMSLEPHSGSF 226
PRK15299 PRK15299
fimbrial chaperone protein StiB; Provisional
 31-227 6.08e-45

fimbrial chaperone protein StiB; Provisional


Pssm-ID: 185199 [Multi-domain]  Cd Length: 227  Bit Score: 149.93  E-value: 6.08e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  31 AGGIALGATRVIYPSAAKQTSLAISNSDTQErYLVNSW---IENSAGQKEKTFIVTPPLFVSEPKSENTLRIIYAGQPLP 107
Cdd:PRK15299  21 AAGINIGTTRVIFHGDAKDASISISNSDNVP-YLIQSWaqsISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGGNLP 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217 108 GDRESLFWMNVKAIPSV--DKSHiegkNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSRVGNHLKITNPSAYYLTLV 185
Cdd:PRK15299 100 EDRESLYWLDIKSIPSSnpDNKH----NTLMLAVKAEFKLIYRPKALTQKPEEVADRLTWSRQGRTLTVKNPTPYYMNFA 175

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 549581217 186 NISVGAKKIDNV-MIAPKSDMQIPLPTGAQGSVTFQTVNDYGA 227
Cdd:PRK15299 176 TLSVGSQKVKAPrYVAPFGNAQYTLPAAASGPIAWSIINDFGG 218
PRK09926 PRK09926
fimbrial chaperone;
8-233 6.96e-45

fimbrial chaperone;


Pssm-ID: 236634 [Multi-domain]  Cd Length: 246  Bit Score: 150.26  E-value: 6.96e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217   8 MLNSIK--LGFIVLLTLFTSLNVQAagGIALGATRVIYPSAAKQTSLAISNSDTQErYLVNSWIEN-----SAGQKEKTF 80
Cdd:PRK09926   1 MFFNTKhtTALCFATCMAFSSSSIA--DIVISGTRIIYKSDQKDVNVRLENKGNNP-LLVQSWLDTgddnaEPGSIKVPF 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  81 IVTPPLFVSEPKSENTLRIIYAGQ-PLPGDRESLFWMNVKAIP-SVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPED 158
Cdd:PRK09926  78 TATPPVSRIDPKRGQTIKLMYTAStALPKDRESVFWFNVLEVPpKPDAEKVANQSLLQLAFRTRIKLFYRPDGLKGNPSE 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217 159 APTLLKFS--RVGNH--LKITNPSAYYLTL--VNISVGAKK--IDNVMIAPKSDMQIPLpTGAQGS-----VTFQTVNDY 225
Cdd:PRK09926 158 APLALKWSwaGSEGKasLRVTNPTPYYVSFssGDLEAGGKRypVDSKMIAPFSDESMKV-KGLSGKassgkVHFYAINDF 236


                 ....*...
gi 549581217 226 GALTSATT 233
Cdd:PRK09926 237 GGAIEGNA 244
PRK15211 PRK15211
fimbrial chaperone;
10-227 1.31e-36

fimbrial chaperone;


Pssm-ID: 185133 [Multi-domain]  Cd Length: 229  Bit Score: 128.79  E-value: 1.31e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  10 NSIKLGFIVLLTLFTSLNVQAAggIALGATRVIYPSAAKQTSLAISNSDTQErYLVNSWIEN-SAGQKEKTFIVTPPLFV 88
Cdd:PRK15211   2 KMMKWGLVSLLSLAVCGQAMAA--FVLNGTRFIYDEGRKNISFEVTNQADQT-YGGQVWIDNtTQGSSTVYMVPAPPFFK 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  89 SEPKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKShiEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSRV 168
Cdd:PRK15211  79 VRPKEKQIIRIMKTDSALPKDRESLFWLNVQEIPPKPKA--SEGNVLAVALNTQVKLIYRPKALKEGRENAEKNLQIIHR 156

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 549581217 169 GNHLKITNPSAYYLTLVNISVGAKKI---DNVM-----IAPKSDMQIPLPTgAQGSVTFQTVNDYGA 227
Cdd:PRK15211 157 GGETYLKNPTPYYFAVTGVKLNGQPVklsDRVMneiaqLAPFSEVSLGKLS-LNGTVTVQAVNDWGG 222
PRK15224 PRK15224
pili assembly chaperone PapD;
34-227 4.45e-33

pili assembly chaperone PapD;


Pssm-ID: 185146 [Multi-domain]  Cd Length: 237  Bit Score: 119.85  E-value: 4.45e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  34 IALGATRVIYPSAAKQTSLAISNSDTQErYLVNSWIENSAGQKEKTFIVTPPLFVSEPKSENTLRIIYAGQPLPGDRESL 113
Cdd:PRK15224  30 VKLGATRVIYHAGTAGATLSVSNPQNYP-ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETL 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217 114 FWMNVKAIPSVDK-SHIEGKNV---LQLAILSRIKLFVRPANLPQTPEDAPTLLKFSRVGNHLKITNPSAYYLTLVNISV 189
Cdd:PRK15224 109 QWVCIKAVPPENEpSDTQAKGAtldLNLSINVCDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTV 188

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 549581217 190 GAKKIDNV-MIAPKSDMQIPLPTGAQGSVTFQTVNDYGA 227
Cdd:PRK15224 189 GGKPITGLeYIPPFADKTLNMPGSAHGDIEWRVITDFGG 227
PRK15249 PRK15249
fimbrial chaperone;
7-230 1.29e-32

fimbrial chaperone;


Pssm-ID: 237930 [Multi-domain]  Cd Length: 253  Bit Score: 118.75  E-value: 1.29e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217   7 TMLNSIKLGFIVLLTLFTSLNVQAAggIALGATRVIYPSAAKQTSLAISNSDTQErYLVNSWIENS--AGQKEKT----F 80
Cdd:PRK15249   5 TRHSALYYLIVFLFLALPATASWAS--VTILGSRIIYPSTASSVDVQLKNNDAIP-YIVQTWFDDGdmNTSPENSsampF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  81 IVTPPLFVSEPKSENTLRIIYAG-QPLPGDRESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLpQTPEDA 159
Cdd:PRK15249  82 IATPPVFRIQPKAGQVVRVIYNNtKKLPQDRESVFWFNVLQVPPTNIGSDSGQNKMLVMLRSRIKLFYRPDGL-GKPDNL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217 160 PTLLKFSRV-----GNHLKITNPSAYYLTLVNISV----GAKKIDNVMIAPKSDMQIPLP-----TGAQGSVTFQTVNDY 225
Cdd:PRK15249 161 AKKLQIKTVnkgsgKSGIVIVNPQPWFASLSNLNVkvngASYNLDADMIAPFSSQTWWLPgkrslKSFSGTVTVTLVNDQ 240


                 ....*
gi 549581217 226 GALTS 230
Cdd:PRK15249 241 GARIS 245
PRK15192 PRK15192
pili/flagellar-assembly chaperone;
30-236 4.11e-32

pili/flagellar-assembly chaperone;


Pssm-ID: 185114 [Multi-domain]  Cd Length: 234  Bit Score: 117.11  E-value: 4.11e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  30 AAGGIALGATRVIYPSAAKQTSLAISNSdTQERYLVNS-------WIENSAGQKEKTFIVTPPLFVSEPKSENTLRIIYA 102
Cdd:PRK15192  20 AQAGVVIGGTRFIYHAGAPALSVPVSNH-SEASWLIDThilpggrWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217 103 GQPLPGDRESLFWMNVKAIPSvdkshieGK---NVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSRVGNHLKITNPSA 179
Cdd:PRK15192  99 GAPLPADRESLFTLSIAAIPS-------GKpeaNRVQMAFRSALKLLYRPEGLAGNPQQAYRHLIWSLTPDGATVRNPTP 171

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 549581217 180 YYLTLVNISVGAKKIDNV-MIAPKSDMQIPLPTGA-QGSVTFQTVNDYGALTSATTASL 236
Cdd:PRK15192 172 YYVTLFLLRANERAQDNAgVVAPFATRQTDWCRHTvRCTVRWQSINDYGRVMTAQTVDL 230
PRK11385 PRK11385
fimbrial chaperone;
10-236 5.83e-30

fimbrial chaperone;


Pssm-ID: 183112 [Multi-domain]  Cd Length: 236  Bit Score: 111.76  E-value: 5.83e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  10 NSIKLGFIVLLTLFTSLNVQAagGIALGATRVIYPSAAKQTSLAISNSdTQERYLVNS-------WIENSAGQKEKTFIV 82
Cdd:PRK11385   6 NRLALLIFAVLSLLVAGELQA--GVVVGGTRFIFPADRESISILLTNT-SQESWLINSkinrptrWAGGEASTVPAPLLA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  83 TPPLFVSEPKSENTLRIIYA-GQPLPGDRESLFWMNVKAIPSvdkSHIEGKNVlQLAILSRIKLFVRPANLPQTPEDAPT 161
Cdd:PRK11385  83 APPLILLKPGTTGTLRLLRTeSDILPVDRETLFELSIASVPS---GKVENQSV-KVAMRSVFKLFWRPEGLPGDPLEAYQ 158

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 549581217 162 LLKFSRVGNHLKITNPSAYYLTLVNISVGAKKIDNV-MIAPKSDMQIPLPTG-AQGSVTFQTVNDYGALTSATTASL 236
Cdd:PRK11385 159 QLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNAgVVPPKSQRQTSWCQAiAPCHVAWRAINDYGGLSAKKEQNL 235
PRK15285 PRK15285
fimbrial chaperone StfD;
9-227 3.38e-28

fimbrial chaperone StfD;


Pssm-ID: 185185 [Multi-domain]  Cd Length: 250  Bit Score: 107.17  E-value: 3.38e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217   9 LNSIKLGFIVLLTLFTSLNVQAAggIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENSAGQK-EKTFIVTPPLF 87
Cdd:PRK15285   4 LKRYNLAAVLLLLLGGYGSAQAA--IAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGVKiTSPLIVVPPVQ 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  88 VSEPKSENTLRIiyAGQP----LPGDRESLFWMNVKAIPsvdkSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLL 163
Cdd:PRK15285  82 RIEPSAIGQVKI--QGMPalasLPQDRETLFYYNVREIP----PQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQY 155

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 549581217 164 KFS--RVGNHLKITNPSAYYLTLVNIS-----VGAKKIDNVMIAPKSDMQIPLPTGAQG-SVTFQTVNDYGA 227
Cdd:PRK15285 156 KITlqRQGNGYQVSNPTGYYVVLSNASnrmdgTPARGFSPLVIAPKSNVTLGGDASELGhSPVLTYVNDYGA 227
PRK15253 PRK15253
putative fimbrial assembly chaperone protein StcB; Provisional
 22-231 4.51e-27

putative fimbrial assembly chaperone protein StcB; Provisional


Pssm-ID: 185165 [Multi-domain]  Cd Length: 242  Bit Score: 103.98  E-value: 4.51e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  22 LFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERyLVNSWIE--NSAGQKEKT---FIVTPPLFVSEPKSENT 96
Cdd:PRK15253  23 LLSAIILPAHAGIVIYGTRVIYPAEKKEVVVQLVNQGEQAS-LVQSWIDdgNTSLPPEKIqvpFMLTPPVARVAAESGQQ 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  97 LRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHiEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSRVGNHLKITN 176
Cdd:PRK15253 102 IKIKKMPNSLPDNKESLFYLNVLDIPPNSQEN-AGKNVLKFAMQNRIKLIWRPSRIAAVTKDSFQRIGLFRSNKTVIMKN 180

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 549581217 177 PSAYYLTLVNISVGAKKIDN--VMIAPKSDMQIPLPTGAQGSVTFQTVNDYGALTSA 231
Cdd:PRK15253 181 DTANWITVTDVKAGNTKINDqtIMLPPLSTQNINMKYASTSQYEVTIIDDNGNYISS 237
PRK15246 PRK15246
fimbrial assembly chaperone;
39-226 8.88e-27

fimbrial assembly chaperone;


Pssm-ID: 185158 [Multi-domain]  Cd Length: 233  Bit Score: 103.12  E-value: 8.88e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  39 TRVIYPSAAKQTSLAISNsDTQERYLVNSWIE----NSAGQKEKT-FIVTPPLFVSEPKSENTLRIIYAG-QPLPGDRES 112
Cdd:PRK15246  17 TRIIFASDDVAQSLTLSN-DNTTPMLLQVWTDagniDASPDNSKTpLVALPPVFKMQPGELRTLRLLLSSrQQLATDRES 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217 113 LFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSRVGNHLKITNPSAYYLTLVNISVGAK 192
Cdd:PRK15246  96 LFWLNIYQIPPVTQDIKNHPRKLVLPLRLRLKILIRPTGLKAPTEAEEKKLRFIAKENTIRIVNPTSWYMSLTLTMDNKK 175

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 549581217 193 KIDNVMIAPKSDMQIPLPTG--AQGSVTFQTVNDYG 226
Cdd:PRK15246 176 SIGDIMVAPKTALDVPLTRSptPGASINYAVINDSG 211
PRK15218 PRK15218
fimbrial assembly chaperone;
30-232 1.15e-26

fimbrial assembly chaperone;


Pssm-ID: 185140 [Multi-domain]  Cd Length: 226  Bit Score: 102.75  E-value: 1.15e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  30 AAGGIALGATRVIYPSAAKQTSLAISNSDTQERyLVNSWIEN--SAGQKEKT---FIVTPPLFVSEPKSENTLRIIYAGQ 104
Cdd:PRK15218  16 AWSGIYIYGTRIIYPAQKKDITVQLMNDGKRSS-LIQAWIDNgdTSLPPEKLqvpFIMTPPVIRVAANSGQQLKIKKLAN 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217 105 PLPGDRESLFWMNVKAIPSvDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSRVGNHLKITNPSAYYLTL 184
Cdd:PRK15218  95 NLPGDRESLFYLNVLDIPP-NSDENKDKNIIKFALQNRIKLIYRPPGVQKVDKATFSRLQLLRAPGSISVKNNSANWITI 173

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 549581217 185 VNISVGAK-KIDNVMIAPKSDMQIPlPTGAQGSVTFQTVNDYGALTSAT 232
Cdd:PRK15218 174 PEIKAKSKvNKETLLLAPWSSQSIT-TTVVVNSYTVTLIDDSGNYLNET 221
PRK15254 PRK15254
fimbrial chaperone protein StdC; Provisional
 17-228 7.52e-25

fimbrial chaperone protein StdC; Provisional


Pssm-ID: 185166 [Multi-domain]  Cd Length: 239  Bit Score: 98.31  E-value: 7.52e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  17 IVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENSAGQKEKTFIVTPPLFVSEPKSENT 96
Cdd:PRK15254   1 VILLALAAAWSQYSPAAVNVDRTRIIMDAPQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  97 LRIIYA---GQPLPGDRESLFWMNVKAIPSvdKShiEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTL-LKFSRVGNHL 172
Cdd:PRK15254  81 VRITQVrglTDKLPQDRETLFWFNVRGVPP--KP--EDDNVLQLAMQSQLKLFYRPKAIIRSSSDQPERkLTAERNAGHL 156

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 549581217 173 KITNPSAYYLTLVniSVGAKK-------IDNVMIAPKSDMQIP--LPTGAQgSVTFQTVNDYGAL 228
Cdd:PRK15254 157 TLRNPTPYYITVA--WLGADRshrlsgfREGVMVPPLGSLPLKavLPAETR-TLWVGYIDDYGGL 218
PRK15274 PRK15274
putative periplasmic fimbrial chaperone protein SteC; Provisional
 39-227 1.52e-23

putative periplasmic fimbrial chaperone protein SteC; Provisional


Pssm-ID: 185177 [Multi-domain]  Cd Length: 257  Bit Score: 95.23  E-value: 1.52e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  39 TRVIYPSAAKQTSLAISNSDTQERYLVNSWIENSAGQKE-KTFIVTPPLFVSEPKSENTLRI--IYAGQPLPGDRESLFW 115
Cdd:PRK15274  33 TRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDtRYFTALPPLQRIEPKSDGQVKVqpLPAAASLPQDRESLFY 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217 116 MNVKAIPSvdKShiEGKNVLQLAILSRIKLFVRPANLP-QTPEDAP--TLLKFSRVGNHLKITNPSAYYLTLVNisVGAK 192
Cdd:PRK15274 113 FNVREIPP--KS--DKPNTLQLALQTRIKFFYRPVAVArQVDKTHPwqTKLTLTYQGDGVIFDNPTPFYLVISN--AGSK 186

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 549581217 193 K------IDNVMIAPKSDMQIPLPTGAQGSV-TFQTVNDYGA 227
Cdd:PRK15274 187 EnetasgFKNLLIAPREKVTSPIKGASLGSSpVVGYVDDYGG 228
PRK15233 PRK15233
fimbrial chaperone SefB;
26-227 9.25e-23

fimbrial chaperone SefB;


Pssm-ID: 185149 [Multi-domain]  Cd Length: 246  Bit Score: 92.87  E-value: 9.25e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  26 LNVQAAGGIALGATRVIYPSAAKQTSLAISNsDTQERYLVNSWIENSAGQKEKTFIVTPPLFVSEPKSENTLRIIYAGQP 105
Cdd:PRK15233  34 LLTQKYYGLRLGTTRVIYKEDAPSTSFWIMN-EKEYPILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSNL 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217 106 LPGDRESLFWMNVKAIPSVDKSHIEGKNVL------QLAILSRIKLFVRPANLPQTPEDAPTLLKFSRVGNHLKITNPSA 179
Cdd:PRK15233 113 FNKNEESLYWLCVKGVPPLNDNESNNKNNIttnlnvNVVTNSCIKLIYRPKTIDLTTMEIADKLKLERKGNSIVIKNPTS 192

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 549581217 180 YYLTLVNISVG--AKKIDNVMIAPKSDMQipLPTGAQGSVTFQTVNDYGA 227
Cdd:PRK15233 193 SYVNIANIKSGnlSFNIPNGYIEPFGYAQ--LPGGVHSKITLTILDDNGA 240
PRK09918 PRK09918
putative fimbrial chaperone protein; Provisional
 16-180 6.77e-16

putative fimbrial chaperone protein; Provisional


Pssm-ID: 236632 [Multi-domain]  Cd Length: 230  Bit Score: 73.92  E-value: 6.77e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  16 FIVLLTLFTSLNVQAAGgIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSwIENSAGQKEKTFIVTPPLFVSEPKSEN 95
Cdd:PRK09918   9 FTALVLLSSSSAVHAAG-MVPETSVVIVEESDGEGSINVKNTDSNPILLYTT-LVDLPEDKSKLLLVTPPVARVEPGQSQ 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549581217  96 TLR-IIYAGQPLpgDRESLFWMNVKAIPSVDKshieGKNVLQLAILSRIKLFVRPANLPQTpEDAPTLLKFSRVGNHLKI 174
Cdd:PRK09918  87 QVRfILKSGSPL--NTEHLLRVSFEGVPPKPG----GKNKVVMPIRQDLPVLIQPAALPVV-RDPWKLLVWSISGNNLVV 159


                 ....*.
gi 549581217 175 TNPSAY 180
Cdd:PRK09918 160 SNPSPY 165
PapD_C pfam02753
Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is ...
 174-230 3.22e-12

Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is the C-terminal part of the pilus and flagellar-assembly chaperone protein PapD.


Pssm-ID: 426960 [Multi-domain]  Cd Length: 63  Bit Score: 59.97  E-value: 3.22e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 549581217  174 ITNPSAYYLTLVNISVGAKK----IDNVMIAPKSDMQIPLPT--GAQGSVTFQTVNDYGALTS 230
Cdd:pfam02753   1 VKNPTPYYVTFSSLSLGGGGkelaLDPGMVAPFSSQTFAGLPapAAGGTVSYTYINDYGGIVP 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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