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Conserved domains on  [gi|552147915|gb|ERU13385|]
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hypothetical protein P035_00998 [Brucella suis 06-988-1656]

Protein Classification

TniQ family protein( domain architecture ID 10534787)

TniQ family protein similar to Vibrio cholerae TniQ protein that is part of the RNA-guided DNA integration in type I-F CRISPR-Cas system; TniQ binds to the Cascade complex and recruits the core TnsABC machinery for transposition, thus playing an essential role in transposition

Gene Ontology:  GO:0032196|GO:0015074
PubMed:  8594337|31900425

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TniQ pfam06527
TniQ; This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is ...
 7-140 5.27e-17

TniQ; This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.


:

Pssm-ID: 461938  Cd Length: 143  Bit Score: 78.01  E-value: 5.27e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552147915    7 ALTCELADRETPTSFASRLAVRNMVgSAGEFCLDVGLNWKS------LRMGNSTEIARLSAISRASPPDL---------Q 71
Cdd:pfam06527   1 PIRPAPYPDESLSSYLARLARANGV-SPKTLLRDLFGGSGRsladldLPLNLPALLARLAALTGLDPERLeamtllpyyL 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 552147915   72 RYAFRSLGQARQKIGRELATNRSVHRMSAKLCPVCLTESvaatGFSGAFRRLdWQFVAIKSCDIHQVAL 140
Cdd:pfam06527  80 RSVLVPPGGRIRRRLGLAISSRGLRREGLRFCPLCLAED----GVPYYWRLL-WQLPLVTVCPKHGCRL 143
 
Name Accession Description Interval E-value
TniQ pfam06527
TniQ; This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is ...
 7-140 5.27e-17

TniQ; This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.


Pssm-ID: 461938  Cd Length: 143  Bit Score: 78.01  E-value: 5.27e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552147915    7 ALTCELADRETPTSFASRLAVRNMVgSAGEFCLDVGLNWKS------LRMGNSTEIARLSAISRASPPDL---------Q 71
Cdd:pfam06527   1 PIRPAPYPDESLSSYLARLARANGV-SPKTLLRDLFGGSGRsladldLPLNLPALLARLAALTGLDPERLeamtllpyyL 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 552147915   72 RYAFRSLGQARQKIGRELATNRSVHRMSAKLCPVCLTESvaatGFSGAFRRLdWQFVAIKSCDIHQVAL 140
Cdd:pfam06527  80 RSVLVPPGGRIRRRLGLAISSRGLRREGLRFCPLCLAED----GVPYYWRLL-WQLPLVTVCPKHGCRL 143
 
Name Accession Description Interval E-value
TniQ pfam06527
TniQ; This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is ...
 7-140 5.27e-17

TniQ; This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.


Pssm-ID: 461938  Cd Length: 143  Bit Score: 78.01  E-value: 5.27e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552147915    7 ALTCELADRETPTSFASRLAVRNMVgSAGEFCLDVGLNWKS------LRMGNSTEIARLSAISRASPPDL---------Q 71
Cdd:pfam06527   1 PIRPAPYPDESLSSYLARLARANGV-SPKTLLRDLFGGSGRsladldLPLNLPALLARLAALTGLDPERLeamtllpyyL 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 552147915   72 RYAFRSLGQARQKIGRELATNRSVHRMSAKLCPVCLTESvaatGFSGAFRRLdWQFVAIKSCDIHQVAL 140
Cdd:pfam06527  80 RSVLVPPGGRIRRRLGLAISSRGLRREGLRFCPLCLAED----GVPYYWRLL-WQLPLVTVCPKHGCRL 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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