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Conserved domains on  [gi|554698641|gb|ESK04171|]
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lipopolysaccharide core heptose(II)-phosphate phosphatase [Escherichia coli HVH 50 (4-2593475)]

Protein Classification

histidine phosphatase family protein( domain architecture ID 10794156)

histidine phosphatase family protein similar to Salmonella lipopolysaccharide core heptose(II)-phosphate phosphatase, which helps remodel lipopolysaccharide via removal of the Hep(II) phosphate in the LPS inner core region

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK15416 PRK15416
lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
1-200 3.20e-127

lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional


:

Pssm-ID: 185314  Cd Length: 201  Bit Score: 356.41  E-value: 3.20e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554698641   1 MLAFCRSSLKSKKYIII-LLALAAIAGLGTHAAWSSNGLPRIDNKTLARLAQQHPVVVLFRHAERCDRSTNQCLSDKTGI 79
Cdd:PRK15416   1 MLAFCRSSSKSKKYFFIlLGALAAIAGLTTQAAWSSNGLPRIDNKTLAELAKQHPVVVLFRHAERCDRSDNQCLSDKTGI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554698641  80 TVKGTQDARELGNAFSADIPDFDLYSSNTVRTIQSATWFSAGKKLTVDKRLLQCGNEIYSAIKDLQSKAPDKNIVIFTHN 159
Cdd:PRK15416  81 TVKGTQDARELGKAFSADIPDYDLYSSNTVRTIQSATWFSAGKKLTVDKRLSDCGNGIYSAIKDLQRKSPDKNIVIFTHN 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 554698641 160 HCLTYIAKDKRDATFKPDYLDGLVMHVEKGKVYLDGEFVNH 200
Cdd:PRK15416 161 HCLTYIAKDKRGVKFKPDYLDALVMHVEKGKLYLDGEFVNH 201
 
Name Accession Description Interval E-value
PRK15416 PRK15416
lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
1-200 3.20e-127

lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional


Pssm-ID: 185314  Cd Length: 201  Bit Score: 356.41  E-value: 3.20e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554698641   1 MLAFCRSSLKSKKYIII-LLALAAIAGLGTHAAWSSNGLPRIDNKTLARLAQQHPVVVLFRHAERCDRSTNQCLSDKTGI 79
Cdd:PRK15416   1 MLAFCRSSSKSKKYFFIlLGALAAIAGLTTQAAWSSNGLPRIDNKTLAELAKQHPVVVLFRHAERCDRSDNQCLSDKTGI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554698641  80 TVKGTQDARELGNAFSADIPDFDLYSSNTVRTIQSATWFSAGKKLTVDKRLLQCGNEIYSAIKDLQSKAPDKNIVIFTHN 159
Cdd:PRK15416  81 TVKGTQDARELGKAFSADIPDYDLYSSNTVRTIQSATWFSAGKKLTVDKRLSDCGNGIYSAIKDLQRKSPDKNIVIFTHN 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 554698641 160 HCLTYIAKDKRDATFKPDYLDGLVMHVEKGKVYLDGEFVNH 200
Cdd:PRK15416 161 HCLTYIAKDKRGVKFKPDYLDALVMHVEKGKLYLDGEFVNH 201
HP cd07040
Histidine phosphatase domain found in a functionally diverse set of proteins, mostly ...
55-167 5.82e-15

Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phosphorelay signaling system; phytases scavenge phosphate from extracellular sources. Deficiency and mutation in many of the human members result in disease, for example erythrocyte BPGM deficiency is a disease associated with a decrease in the concentration of 2,3-BPG. Clinical applications include the use of prostatic acid phosphatase (PAP) as a serum marker for prostate cancer. Agricultural applications include the addition of phytases to animal feed.


Pssm-ID: 132716 [Multi-domain]  Cd Length: 153  Bit Score: 68.98  E-value: 5.82e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554698641  55 VVVLFRHAERCDRSTNQCLSDKTG-ITVKGTQDARELGNAFSADIPDFDL-YSSNTVRTIQSATWFSAGKKLTV------ 126
Cdd:cd07040    1 VLYLVRHGEREPNAEGRFTGWGDGpLTEKGRQQARELGKALRERYIKFDRiYSSPLKRAIQTAEIILEGLFEGLpvevdp 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 554698641 127 DKRLLqcgNEIYSAIKdlQSKAPDKNIVIFTHNHCLTYIAK 167
Cdd:cd07040   81 RARVL---NALLELLA--RHLLDGKNVLIVSHGGTIRALLA 116
SixA COG2062
Phosphohistidine phosphatase SixA [Signal transduction mechanisms];
56-166 1.70e-11

Phosphohistidine phosphatase SixA [Signal transduction mechanisms];


Pssm-ID: 441665 [Multi-domain]  Cd Length: 153  Bit Score: 59.50  E-value: 1.70e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554698641  56 VVLFRHAERCDRSTNqcLSDKT-GITVKGTQDARELGNAFSADIPDFDL-YSSNTVRTIQSATWFSAG----KKLTVDKR 129
Cdd:COG2062    1 LILVRHAKAEWRAPG--GDDFDrPLTERGRRQARAMARWLAALGLKPDRiLSSPALRARQTAEILAEAlglpPKVEVEDE 78
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 554698641 130 LLQCG-NEIYSAIKDLQSkapDKNIVIFTHNHCLTYIA 166
Cdd:COG2062   79 LYDADpEDLLDLLRELDD---GETVLLVGHNPGLSELA 113
PGAM smart00855
Phosphoglycerate mutase family; Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase ...
56-124 7.49e-03

Phosphoglycerate mutase family; Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate... Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.


Pssm-ID: 214859 [Multi-domain]  Cd Length: 158  Bit Score: 35.51  E-value: 7.49e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 554698641    56 VVLFRHAE-------RCDRSTNQCLSDKtgitvkGTQDARELGNAFSADIPD-FD-LYSSNTVRTIQSATWFSAGKKL 124
Cdd:smart00855   2 LYLIRHGEtewnregRLYGDTDVPLTEL------GRAQAEALGRLLASLLLPrFDvVYSSPLKRARQTAEALAIALGL 73
 
Name Accession Description Interval E-value
PRK15416 PRK15416
lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
1-200 3.20e-127

lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional


Pssm-ID: 185314  Cd Length: 201  Bit Score: 356.41  E-value: 3.20e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554698641   1 MLAFCRSSLKSKKYIII-LLALAAIAGLGTHAAWSSNGLPRIDNKTLARLAQQHPVVVLFRHAERCDRSTNQCLSDKTGI 79
Cdd:PRK15416   1 MLAFCRSSSKSKKYFFIlLGALAAIAGLTTQAAWSSNGLPRIDNKTLAELAKQHPVVVLFRHAERCDRSDNQCLSDKTGI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554698641  80 TVKGTQDARELGNAFSADIPDFDLYSSNTVRTIQSATWFSAGKKLTVDKRLLQCGNEIYSAIKDLQSKAPDKNIVIFTHN 159
Cdd:PRK15416  81 TVKGTQDARELGKAFSADIPDYDLYSSNTVRTIQSATWFSAGKKLTVDKRLSDCGNGIYSAIKDLQRKSPDKNIVIFTHN 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 554698641 160 HCLTYIAKDKRDATFKPDYLDGLVMHVEKGKVYLDGEFVNH 200
Cdd:PRK15416 161 HCLTYIAKDKRGVKFKPDYLDALVMHVEKGKLYLDGEFVNH 201
HP cd07040
Histidine phosphatase domain found in a functionally diverse set of proteins, mostly ...
55-167 5.82e-15

Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phosphorelay signaling system; phytases scavenge phosphate from extracellular sources. Deficiency and mutation in many of the human members result in disease, for example erythrocyte BPGM deficiency is a disease associated with a decrease in the concentration of 2,3-BPG. Clinical applications include the use of prostatic acid phosphatase (PAP) as a serum marker for prostate cancer. Agricultural applications include the addition of phytases to animal feed.


Pssm-ID: 132716 [Multi-domain]  Cd Length: 153  Bit Score: 68.98  E-value: 5.82e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554698641  55 VVVLFRHAERCDRSTNQCLSDKTG-ITVKGTQDARELGNAFSADIPDFDL-YSSNTVRTIQSATWFSAGKKLTV------ 126
Cdd:cd07040    1 VLYLVRHGEREPNAEGRFTGWGDGpLTEKGRQQARELGKALRERYIKFDRiYSSPLKRAIQTAEIILEGLFEGLpvevdp 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 554698641 127 DKRLLqcgNEIYSAIKdlQSKAPDKNIVIFTHNHCLTYIAK 167
Cdd:cd07040   81 RARVL---NALLELLA--RHLLDGKNVLIVSHGGTIRALLA 116
SixA COG2062
Phosphohistidine phosphatase SixA [Signal transduction mechanisms];
56-166 1.70e-11

Phosphohistidine phosphatase SixA [Signal transduction mechanisms];


Pssm-ID: 441665 [Multi-domain]  Cd Length: 153  Bit Score: 59.50  E-value: 1.70e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554698641  56 VVLFRHAERCDRSTNqcLSDKT-GITVKGTQDARELGNAFSADIPDFDL-YSSNTVRTIQSATWFSAG----KKLTVDKR 129
Cdd:COG2062    1 LILVRHAKAEWRAPG--GDDFDrPLTERGRRQARAMARWLAALGLKPDRiLSSPALRARQTAEILAEAlglpPKVEVEDE 78
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 554698641 130 LLQCG-NEIYSAIKDLQSkapDKNIVIFTHNHCLTYIA 166
Cdd:COG2062   79 LYDADpEDLLDLLRELDD---GETVLLVGHNPGLSELA 113
HP_HAP_like cd07061
Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His ...
55-121 1.45e-05

Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction; Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been shown in mouse models to suppress pain by functioning as an ecto-5prime-nucleotidase. In vivo it dephosphorylates extracellular adenosine monophosphate (AMP) generating adenosine,and leading to the activation of A1-adenosine receptors in dorsal spinal cord.


Pssm-ID: 132717 [Multi-domain]  Cd Length: 242  Bit Score: 44.29  E-value: 1.45e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 554698641  55 VVVLFRHAercDRSTNQclsdktgITVKGTQDARELGNAFSADIP-----------DFDLYSSNTVRTIQSATWFSAG 121
Cdd:cd07061    5 VQVLSRHG---DRYPGE-------LTPFGRQQAFELGRYFRQRYGellllhsynrsDLYIRSSDSQRTLQSAQAFLAG 72
PhoE COG0406
Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism];
56-166 5.91e-04

Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism];


Pssm-ID: 440175 [Multi-domain]  Cd Length: 195  Bit Score: 39.16  E-value: 5.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554698641  56 VVLFRHAE-------RCDRSTNQCLSDKtgitvkGTQDARELGNAFsADIPdFD-LYSSNTVRTIQSATWFSA--GKKLT 125
Cdd:COG0406    4 LYLVRHGEtewnaegRLQGRLDVPLTEL------GRAQARALAERL-ADIP-FDaVYSSPLQRARQTAEALAEalGLPVE 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554698641 126 VDKRL------------------------------------------LQCGNEIYSAIKDLQSKAPDKNIVIFTHNHCLT 163
Cdd:COG0406   76 VDPRLreidfgdwegltfaelearypealaawladpaefrppggeslADVQARVRAALEELLARHPGGTVLVVTHGGVIR 155

                 ...
gi 554698641 164 YIA 166
Cdd:COG0406  156 ALL 158
PGAM smart00855
Phosphoglycerate mutase family; Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase ...
56-124 7.49e-03

Phosphoglycerate mutase family; Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate... Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.


Pssm-ID: 214859 [Multi-domain]  Cd Length: 158  Bit Score: 35.51  E-value: 7.49e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 554698641    56 VVLFRHAE-------RCDRSTNQCLSDKtgitvkGTQDARELGNAFSADIPD-FD-LYSSNTVRTIQSATWFSAGKKL 124
Cdd:smart00855   2 LYLIRHGEtewnregRLYGDTDVPLTEL------GRAQAEALGRLLASLLLPrFDvVYSSPLKRARQTAEALAIALGL 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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