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Conserved domains on  [gi|554702979|gb|ESK08489|]
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phage protein [Escherichia coli HVH 50 (4-2593475)]

Protein Classification

YdfR family protein( domain architecture ID 10537141)

YdfR family protein is a DUF1327 domain-containing protein; similar to Escherichia coli protein YdfR

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1327 pfam07041
Protein of unknown function (DUF1327); This family consists of several hypothetical bacterial ...
 1-84 1.92e-50

Protein of unknown function (DUF1327); This family consists of several hypothetical bacterial proteins of around 115 residues in length which seem to be specific to Escherichia coli. The function of this family is unknown.


:

Pssm-ID: 311164  Cd Length: 113  Bit Score: 154.94  E-value: 1.92e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554702979    1 MTQKYELIVKGIRNFENKVTVTLALRDKERFDGEIFDLDISLDHVEGAALEFYEAAARRSIRQVFLDVAAGLCEGDELLP 80
Cdd:pfam07041   1 MKKDYELVVKGINNFEDKITVTVALEDGERFDGEIFDLAIALDRTEGAALEFYEAAAKKQAKQFFLDVAAGLCEGDEKLP 80


                  ....
gi 554702979   81 ETRP 84
Cdd:pfam07041  81 EKRE 84
 
Name Accession Description Interval E-value
DUF1327 pfam07041
Protein of unknown function (DUF1327); This family consists of several hypothetical bacterial ...
 1-84 1.92e-50

Protein of unknown function (DUF1327); This family consists of several hypothetical bacterial proteins of around 115 residues in length which seem to be specific to Escherichia coli. The function of this family is unknown.


Pssm-ID: 311164  Cd Length: 113  Bit Score: 154.94  E-value: 1.92e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554702979    1 MTQKYELIVKGIRNFENKVTVTLALRDKERFDGEIFDLDISLDHVEGAALEFYEAAARRSIRQVFLDVAAGLCEGDELLP 80
Cdd:pfam07041   1 MKKDYELVVKGINNFEDKITVTVALEDGERFDGEIFDLAIALDRTEGAALEFYEAAAKKQAKQFFLDVAAGLCEGDEKLP 80


                  ....
gi 554702979   81 ETRP 84
Cdd:pfam07041  81 EKRE 84
 
Name Accession Description Interval E-value
DUF1327 pfam07041
Protein of unknown function (DUF1327); This family consists of several hypothetical bacterial ...
 1-84 1.92e-50

Protein of unknown function (DUF1327); This family consists of several hypothetical bacterial proteins of around 115 residues in length which seem to be specific to Escherichia coli. The function of this family is unknown.


Pssm-ID: 311164  Cd Length: 113  Bit Score: 154.94  E-value: 1.92e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554702979    1 MTQKYELIVKGIRNFENKVTVTLALRDKERFDGEIFDLDISLDHVEGAALEFYEAAARRSIRQVFLDVAAGLCEGDELLP 80
Cdd:pfam07041   1 MKKDYELVVKGINNFEDKITVTVALEDGERFDGEIFDLAIALDRTEGAALEFYEAAAKKQAKQFFLDVAAGLCEGDEKLP 80


                  ....
gi 554702979   81 ETRP 84
Cdd:pfam07041  81 EKRE 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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