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type VI secretion protein IcmF [Escherichia coli UMEA 3148-1]
Protein Classification
type VI secretion system membrane subunit ( domain architecture ID 11466348 )
type VI secretion system membrane subunit such as the IcmF (intracellular multiplication protein F) family protein that exhibits ATPase activity and energizes type VI secretion; it is a conserved T6SS inner membrane protein
List of domain hits
Name
Accession
Description
Interval
E-value
IcmF
COG3523 Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and ...
23-1173
0e+00
Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442745 [Multi-domain]
Cd Length: 1192
Bit Score: 1036.06
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 23 RF KV S AFW L LI L AWIF L LVW IW WK GP TWTLYEEQW L KPLAN R W LA T A AWGIIA L MWLT VR VMKRLQQLEKMQKQQR E E A - 101
Cdd:COG3523 4 RF LT S RWV L SL L GLLA L ALL IW FG GP LLAIGDYRP L ESVLV R L LA I A VILLLW L LVWL VR RWRARRANRALEDALA E Q A e 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 102 ---- V DP LSV E LN A QQRYLDRW L LR L QR ---- YLDN RR F L WQ LPWY MV IGP A G S GKTT L L REG --- FP SDIIYAPEGA RG 170
Cdd:COG3523 84 ekaa A DP SRE E IE A LRERFQEA L AT L KK srlg QGGG RR A L YE LPWY LI IGP P G A GKTT A L VNS glk FP LADKFGKAAI RG 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 171 AEQRLYLTPHVGKQ AV IF D ID G TLCAPADADILH R RL W EHA L GW LK EK R A RQP L NG I I LTLD L P DLLT ADKRR RE HLLQT 250
Cdd:COG3523 164 VGGTRNCDWWFTDE AV LI D TA G RYTTQDSDAEVD R AE W LGF L DL LK KH R P RQP I NG V I VAIS L A DLLT QSPEE RE QHAKA 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 251 LR S RLQ DI R QH L HCQL PVYV VL T RL DLL Q GF AAL F QS L NRQD R DAIL G V TF TRRAHEND D WRT E LN A FWQTWVD R M N LA L 330
Cdd:COG3523 244 LR Q RLQ EL R ER L GIRF PVYV LF T KA DLL A GF SEF F AD L DKEE R EQVW G F TF PYDEKQEF D LLA E FD A EFDELLE R L N ER L 323
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 331 P D LMVAQT -- HT R TSL F S F SR Q MQGSR E P L VSL LE G L LDGEN -- MNVM LRGVY L TS SL Q R G QMD D IFTQSA AR QYR L GNN 406
Cdd:COG3523 324 L D RLQQER dp ER R ALI F G F PQ Q FAALK E A L AEF LE E L FEPNR yq TPPL LRGVY F TS GT Q E G TPI D RVMGAL AR NFG L SRA 403
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 407 P L ASWP l VDTAP YF TRS LF PQALLA E PN LA TES R A W LI R S R RRLTVFS A TGGV A A L L L IT GW HHY Y NG N YQSGIT V LKQA 486
Cdd:COG3523 404 A L PAQS - GSGRS YF LKD LF SKVIFP E AG LA GRN R R W ER R R R WLRRAAY A AAAL A L L G L LG GW TWS Y LN N RRLLAE V EAKV 482
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 487 K A FMDVPPPQGED D - FGNLQ LP L LN PV RD ATLA YG DWG D RSR L - A DM GLYQG RRI GP YVEQT YL QL LEQ RY LP S L FNG L V 564
Cdd:COG3523 483 D A YRALAAALLVA D t DLAAL LP A LN AL RD LPAG YG YRR D DPP L s A GL GLYQG DKL GP AARAA YL RA LEQ LL LP R L ALR L E 562
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 565 KAMNA AP PES EE KLAV L RVMR ML E D KSG R NNEVV K QY MA KR W S E KFH G Q -- RDIQ A Q L MS HLD YA L AH tdwhaerqa G DG 642
Cdd:COG3523 563 EQLRQ AP ADP EE LYEA L KAYL ML G D PEH R DADFL K AW MA RD W R E LLP G N tr AELR A A L ER HLD AL L DL --------- G GD 633
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 643 DAISRWTPYDKP V VS A QK EL SKL P VY QRVY QS LK T RAL GVLPA D LN L R D Q VGP TFDQ VFT SADDN -- K L VV P QFL TR Y G L 720
Cdd:COG3523 634 PSAPPLPLDEAL V AQ A RA EL RRV P LA QRVY AR LK A RAL ATRLP D FT L A D A VGP QAAL VFT RSSGK pl T L GI P GLF TR E G Y 713
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 721 QSY F VKQR DEL V E LT A M D S WVL N L TRSVKY S D ADR AEI QR QLTEQ Y IS DY T A T WRA GMDN L NIRN F E S IG Q LTG AL EQVI 800
Cdd:COG3523 714 HEV F LPAI DEL A E EL A R D D WVL G L SAEDDL S E ADR EQL QR EVRQL Y LA DY I A E WRA FLGD L RLAP F T S LA Q AIA AL RVLS 793
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 801 S G D Q PL Q R A L TVLR D N T QPGVF SE KLSAKE -------- REEA L AEPDYQ L L ---------------- TRLGHE FAP ENST 856
Cdd:COG3523 794 S P D S PL R R L L RAVA D E T TLTRP SE AAAGGA aakgllaa AKAR L LSARGR L G rllgadaaaaaaqvpg QPVDRH FAP LHRL 873
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 857 LAVQKDKESTMQAVY Q Q L T EL HR YL L AI Q NAP V PGK S ALK AVQ lr LDQNS SD P I F A TRQM A KT LP A PL N RW V G R L T DQAW 936
Cdd:COG3523 874 VEANDGGPAPLDDYL Q A L N EL YT YL T AI A NAP D PGK A ALK LAK -- ASGGG SD L I S A LKAE A GR LP E PL R RW L G S L A DQAW 951
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 937 H VV MVE A VHYMEVD WR DS V VKPFNEQL A NN YPF N PRS AQ D AS L DA F E RFF K P D GILD T F Y QQNLK L F I D --- NDLSLEDG 1013
Cdd:COG3523 952 S VV LGG A RAHLNRR WR AE V YPFCRQAI A GR YPF A PRS SR D VA L AD F A RFF G P G GILD S F F QQNLK P F V D tsg RPWRFRPW 1031
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 1014 D NNVI - IREDII AQ LET A QK IRD I FF S - KQNGLGTS F AVET VSL SGNKR R SV L NL DGQL VD Y SQ G RNYTAHL VWP NNM r E 1091
Cdd:COG3523 1032 D GQGL g LSPAVL AQ FQR A AA IRD A FF A g GGAEPSVR F QIKP VSL DPGIS R FT L EI DGQL LR Y RH G PQRPVSV VWP GPG - G 1110
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 1092 G N ESKL TL IGTS G NA P R S I S FS GPWA Q FRL FGAG QLT G V QDGN FTV R F S VDG GAM TY RVHT D TED NPF SGG L FSQ F GLSD 1171
Cdd:COG3523 1111 S N GARI TL TPLD G TS P S S L S YE GPWA L FRL LDKA QLT T V SPDS FTV T F T VDG RSV TY ELRA D SVN NPF ALP L LRG F RCPE 1190
..
gi 556162003 1172 T L 1173
Cdd:COG3523 1191 S L 1192
Name
Accession
Description
Interval
E-value
IcmF
COG3523 Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and ...
23-1173
0e+00
Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442745 [Multi-domain]
Cd Length: 1192
Bit Score: 1036.06
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 23 RF KV S AFW L LI L AWIF L LVW IW WK GP TWTLYEEQW L KPLAN R W LA T A AWGIIA L MWLT VR VMKRLQQLEKMQKQQR E E A - 101
Cdd:COG3523 4 RF LT S RWV L SL L GLLA L ALL IW FG GP LLAIGDYRP L ESVLV R L LA I A VILLLW L LVWL VR RWRARRANRALEDALA E Q A e 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 102 ---- V DP LSV E LN A QQRYLDRW L LR L QR ---- YLDN RR F L WQ LPWY MV IGP A G S GKTT L L REG --- FP SDIIYAPEGA RG 170
Cdd:COG3523 84 ekaa A DP SRE E IE A LRERFQEA L AT L KK srlg QGGG RR A L YE LPWY LI IGP P G A GKTT A L VNS glk FP LADKFGKAAI RG 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 171 AEQRLYLTPHVGKQ AV IF D ID G TLCAPADADILH R RL W EHA L GW LK EK R A RQP L NG I I LTLD L P DLLT ADKRR RE HLLQT 250
Cdd:COG3523 164 VGGTRNCDWWFTDE AV LI D TA G RYTTQDSDAEVD R AE W LGF L DL LK KH R P RQP I NG V I VAIS L A DLLT QSPEE RE QHAKA 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 251 LR S RLQ DI R QH L HCQL PVYV VL T RL DLL Q GF AAL F QS L NRQD R DAIL G V TF TRRAHEND D WRT E LN A FWQTWVD R M N LA L 330
Cdd:COG3523 244 LR Q RLQ EL R ER L GIRF PVYV LF T KA DLL A GF SEF F AD L DKEE R EQVW G F TF PYDEKQEF D LLA E FD A EFDELLE R L N ER L 323
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 331 P D LMVAQT -- HT R TSL F S F SR Q MQGSR E P L VSL LE G L LDGEN -- MNVM LRGVY L TS SL Q R G QMD D IFTQSA AR QYR L GNN 406
Cdd:COG3523 324 L D RLQQER dp ER R ALI F G F PQ Q FAALK E A L AEF LE E L FEPNR yq TPPL LRGVY F TS GT Q E G TPI D RVMGAL AR NFG L SRA 403
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 407 P L ASWP l VDTAP YF TRS LF PQALLA E PN LA TES R A W LI R S R RRLTVFS A TGGV A A L L L IT GW HHY Y NG N YQSGIT V LKQA 486
Cdd:COG3523 404 A L PAQS - GSGRS YF LKD LF SKVIFP E AG LA GRN R R W ER R R R WLRRAAY A AAAL A L L G L LG GW TWS Y LN N RRLLAE V EAKV 482
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 487 K A FMDVPPPQGED D - FGNLQ LP L LN PV RD ATLA YG DWG D RSR L - A DM GLYQG RRI GP YVEQT YL QL LEQ RY LP S L FNG L V 564
Cdd:COG3523 483 D A YRALAAALLVA D t DLAAL LP A LN AL RD LPAG YG YRR D DPP L s A GL GLYQG DKL GP AARAA YL RA LEQ LL LP R L ALR L E 562
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 565 KAMNA AP PES EE KLAV L RVMR ML E D KSG R NNEVV K QY MA KR W S E KFH G Q -- RDIQ A Q L MS HLD YA L AH tdwhaerqa G DG 642
Cdd:COG3523 563 EQLRQ AP ADP EE LYEA L KAYL ML G D PEH R DADFL K AW MA RD W R E LLP G N tr AELR A A L ER HLD AL L DL --------- G GD 633
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 643 DAISRWTPYDKP V VS A QK EL SKL P VY QRVY QS LK T RAL GVLPA D LN L R D Q VGP TFDQ VFT SADDN -- K L VV P QFL TR Y G L 720
Cdd:COG3523 634 PSAPPLPLDEAL V AQ A RA EL RRV P LA QRVY AR LK A RAL ATRLP D FT L A D A VGP QAAL VFT RSSGK pl T L GI P GLF TR E G Y 713
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 721 QSY F VKQR DEL V E LT A M D S WVL N L TRSVKY S D ADR AEI QR QLTEQ Y IS DY T A T WRA GMDN L NIRN F E S IG Q LTG AL EQVI 800
Cdd:COG3523 714 HEV F LPAI DEL A E EL A R D D WVL G L SAEDDL S E ADR EQL QR EVRQL Y LA DY I A E WRA FLGD L RLAP F T S LA Q AIA AL RVLS 793
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 801 S G D Q PL Q R A L TVLR D N T QPGVF SE KLSAKE -------- REEA L AEPDYQ L L ---------------- TRLGHE FAP ENST 856
Cdd:COG3523 794 S P D S PL R R L L RAVA D E T TLTRP SE AAAGGA aakgllaa AKAR L LSARGR L G rllgadaaaaaaqvpg QPVDRH FAP LHRL 873
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 857 LAVQKDKESTMQAVY Q Q L T EL HR YL L AI Q NAP V PGK S ALK AVQ lr LDQNS SD P I F A TRQM A KT LP A PL N RW V G R L T DQAW 936
Cdd:COG3523 874 VEANDGGPAPLDDYL Q A L N EL YT YL T AI A NAP D PGK A ALK LAK -- ASGGG SD L I S A LKAE A GR LP E PL R RW L G S L A DQAW 951
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 937 H VV MVE A VHYMEVD WR DS V VKPFNEQL A NN YPF N PRS AQ D AS L DA F E RFF K P D GILD T F Y QQNLK L F I D --- NDLSLEDG 1013
Cdd:COG3523 952 S VV LGG A RAHLNRR WR AE V YPFCRQAI A GR YPF A PRS SR D VA L AD F A RFF G P G GILD S F F QQNLK P F V D tsg RPWRFRPW 1031
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 1014 D NNVI - IREDII AQ LET A QK IRD I FF S - KQNGLGTS F AVET VSL SGNKR R SV L NL DGQL VD Y SQ G RNYTAHL VWP NNM r E 1091
Cdd:COG3523 1032 D GQGL g LSPAVL AQ FQR A AA IRD A FF A g GGAEPSVR F QIKP VSL DPGIS R FT L EI DGQL LR Y RH G PQRPVSV VWP GPG - G 1110
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 1092 G N ESKL TL IGTS G NA P R S I S FS GPWA Q FRL FGAG QLT G V QDGN FTV R F S VDG GAM TY RVHT D TED NPF SGG L FSQ F GLSD 1171
Cdd:COG3523 1111 S N GARI TL TPLD G TS P S S L S YE GPWA L FRL LDKA QLT T V SPDS FTV T F T VDG RSV TY ELRA D SVN NPF ALP L LRG F RCPE 1190
..
gi 556162003 1172 T L 1173
Cdd:COG3523 1191 S L 1192
VI_IcmF
TIGR03348 type VI secretion protein IcmF; Members of this protein family are IcmF homologs and tend to ...
31-1171
0e+00
type VI secretion protein IcmF; Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. [Cellular processes, Pathogenesis]
Pssm-ID: 274531 [Multi-domain]
Cd Length: 1169
Bit Score: 892.08
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 31 L LI L AW I F L LVW IWW K GP TWTLYEEQW L KPLAN R W L AT A AWGIIA L M WL TV R VM --- K R L QQL - EKMQKQQREE A VDPLS 106
Cdd:TIGR03348 1 L SL L GL I L L CIL IWW A GP LLAVGDYKP L ESVWA R L L II A VLLLVW L L WL LI R QW rar R R N QQL l AALAAPTKLK A DAAAE 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 107 V E LNAQQRYLDRW L LR L Q R Y - L DN RR F L WQ LPWY M VIGP A GSGKTTLL REG --- FP ------ SDIIYAPE G A R GAEQRL y 176
Cdd:TIGR03348 81 A E IRELRARFNEA L AL L K R S r L GG RR Y L YD LPWY L VIGP P GSGKTTLL QNS glk FP laerlg AAALRGVG G T R NCDWWF - 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 177 ltphv GKQ AV IF D ID G TLCAPADADILHRRL W EHA LG W L KEK R A RQPLNG IIL T LD L P DLLTAD KRR R EHLLQTL R S RLQ 256
Cdd:TIGR03348 160 ----- TDE AV LI D TA G RYTTQDSDPEEDAAA W LGF LG L L RKH R R RQPLNG VVV T VS L A DLLTAD PAE R KAHARAI R Q RLQ 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 257 DI R QH L HCQL PVY V VLT RL DLL Q GF AAL F QS L NRQD R DAIL G V TF TRRAHEN D DWRT E LN A FWQTWVD R M N LA L PDLMVA 336
Cdd:TIGR03348 235 EL R EQ L GARF PVY L VLT KA DLL A GF EEF F AD L DAEE R EQVW G F TF PLDEADD D NAAE E FA A EFEGLLQ R L N AR L LERLHQ 314
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 337 QTHT -- R TSL F S F SR Q MQGSREP LV SL LE GLLDGENM -- NVM LRGVY L TS SL Q R G QMD D IFTQSA AR QYR L gn N P LASWP 412
Cdd:TIGR03348 315 ERDA ar R AAI F R F PA Q LAALKDR LV QF LE EAFAANRY ee APL LRGVY F TS AT Q E G TPI D RLLGAL AR GFG L -- S P GPPAA 392
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 413 LVDTA - P YF TRS LF PQALLA E PN LA TES R AWLI R S R RRLTVFS A TGGV AAL L L ITG W HHY Y NG N YQSGIT V LK Q AK A FMD 491
Cdd:TIGR03348 393 ARGEG r S YF LKD LF KEVIFP E AG LA GLN R RAER R R R WLRRGAY A AAAL AAL G L LGL W SLS Y LA N RDYLDE V RT Q LE A YRA 472
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 492 VPPPQG - EDDFGNLQ LP L L NPV RDA T L AY G DWGDRSR L - A DM GLYQG RRI G PY V EQ TYL QL L EQRY LP S L FNG L VKAMN A 569
Cdd:TIGR03348 473 LAQAIP a APADVLAL LP A L DAL RDA P L GF G NYDEAPP L l A RF GLYQG DKL G EA V RE TYL RA L QAVL LP R L MQR L EAQLQ A 552
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 570 APPES EE KLAV L R V MR ML E D K S G R NNEV VK QYM A K RW SEKFH G -- QR DIQAQ L MS HL DYA L ahtdwhaerq AG D G DA ISR 647
Cdd:TIGR03348 553 QEQDP EE LYET L K V YL ML G D P S R R DADF VK AWF A S RW EQQYP G ey QR ELREA L LG HL RAL L ---------- SL D Q DA VPA 622
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 648 WTPY D KP V VS A QK EL SKL P VY QRVYQ S LK TRA L GVLPA DL N L R D QV GP TF D Q VF TSADDNK L -- VV P QFL TR Y G LQSY F V 725
Cdd:TIGR03348 623 FPLD D AL V EQ A RA EL RAI P LA QRVYQ R LK LQP L DAALP DL S L A D AL GP QA D L VF ERRSGKP L sl GI P GLY TR A G YHDV F L 702
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 726 K Q RDE LVE LTAM D S WVL N - LTRSVKY S D ADR AEIQ R QLTEQ Y IS DY TAT W R A GMDN L NIRN FES IG Q LTGALEQVI S G D Q 804
Cdd:TIGR03348 703 P Q IAN LVE RALE D A WVL G g ASGNSQL S E ADR QALA R EVRKL Y FA DY INQ W D A LLND L RLKP FES LA Q AAALARALA S P D S 782
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 805 PL Q R A L TVLRDN T ---------------- QPGVF S EKL SA KEREEAL A E P DYQL L T --- RLGHE F A P ENST LA VQKDKES 865
Cdd:TIGR03348 783 PL A R L L RAVARE T rltpvdgapadggsna AAKKL S GLA SA LGAQLLP A A P GAAA L P epg AVERH F E P LRRL LA PNGGPGA 862
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 866 TMQ A VYQQ L T EL HRY L L A IQNA P V PG KS ALKA VQ lrld QNSS D PIF A T RQ M A KT LP A PL NR W V G R L TDQA W HV V MVE A VH 945
Cdd:TIGR03348 863 ALD A LLAA L N EL YQQ L Q A LAAS P N PG QA ALKA RM ---- SGLA D ALS A L RQ A A AR LP E PL RG W L G S L AADT W KL V LQA A RS 938
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 946 YMEVD W RDS V VKPFNEQL A NN YPF N P R S AQ D AS L DA FERFF K P D G I LD T F Y QQNL KL F I D --- N DLSLED GD NNVI - I RE 1021
Cdd:TIGR03348 939 HLNAR W QSE V YSFCQQAI A GR YPF S P N S SK D VP L AD FERFF G P G G L LD S F F QQNL AP F V D tsa N PWRWKG GD GGSL g I SP 1018
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 1022 DII AQ LET A QK IRD I FF - S KQNGLGT SF AVETV SL SG N K RR S VL NL DGQ LVD Y SQ G RNYTAH L V WP NNM r E G NESK LTL I 1100
Cdd:TIGR03348 1019 SVL AQ FQR A AR IRD A FF r S GGGEPAV SF TLKPI SL DP N I RR F VL EV DGQ TLR Y AH G PTRPVS L T WP GPN - D G GLAR LTL K 1097
1130 1140 1150 1160 1170 1180 1190
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 556162003 1101 GTS G NA PR SIS FSGPWA Q FRL FG AG Q LT GVQDGN - FTV RF S V D GGA MT Y RVHTDTE DNPF SG GL F S Q F GLSD 1171
Cdd:TIGR03348 1098 PAD G GS PR TLT FSGPWA L FRL LD AG R LT RTGSRD r LDL RF D V G GGA VR Y ELRAGSA DNPF TS GL L S G F RCPG 1169
IcmF-related
pfam06761 Intracellular multiplication and human macrophage-killing; This family represents a conserved ...
506-818
1.58e-71
Intracellular multiplication and human macrophage-killing; This family represents a conserved region within several bacterial proteins that resemble IcmF, which has been proposed to be involved in Vibrio cholerae cell surface reorganization, resulting in increased adherence to epithelial cells and increased conjugation frequency. Note that many family members are hypothetical proteins.
Pssm-ID: 429106 [Multi-domain]
Cd Length: 305
Bit Score: 241.09
E-value: 1.58e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 506 LP L L NPV RD ATLA -- YGDWGDRSRLADM GLYQG RRI G PYVEQT Y LQL L E Q RY LP S L FNG L VKAMN A - A P P ES E EKLAV L R 582
Cdd:pfam06761 1 LP A L DAL RD LPEG ll DYYQEGPPLSYRF GLYQG DKL G AAARAA Y RRA L R Q LL LP R L AQR L EAQLR A l A G P DP E ALYEA L K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 583 VMR ML E D KSG R NNEVVKQYMAKR W SEKFH GQ RDI Q -- AQ L MS HLD YA LA H tdwh AERQAG D GDAISR wtpydkpvvs A QK 660
Cdd:pfam06761 81 AYL ML G D PER R DAAFLAAWLTRD W ERALP GQ ATG Q qr EA L LA HLD AL LA D ---- PPAIPP D AALVAQ ---------- A RA 146
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 661 E L SKL P VYQ RVYQ S LK TR AL GVLPA D LN L R D Q VGP TFDQ VFT SADDNK L -- V VP QFL TR Y G LQS YF VKQR DEL V EL TAMD 738
Cdd:pfam06761 147 T L ARV P LAE RVYQ R LK RQ AL ASALP D FT L A D A VGP DAAL VFT RSSGKP L se G VP GLF TR A G YHG YF LPAL DEL A EL LLEE 226
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 739 S WVL NLTRSVKY s D AD RAEIQRQ L T E Q Y IS DY T A T W R A GMDN L NIRN F E S IG Q LTGA L EQVISG D Q PL Q R A L TVLR D N T Q 818
Cdd:pfam06761 227 D WVL GDLAASAL - E AD PEQLADD L R E L Y FT DY A A A W Q A FLND L RLVP F A S LA Q AIDV L RLLADP D S PL L R L L QAVA D E T T 305
Name
Accession
Description
Interval
E-value
IcmF
COG3523 Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and ...
23-1173
0e+00
Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442745 [Multi-domain]
Cd Length: 1192
Bit Score: 1036.06
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 23 RF KV S AFW L LI L AWIF L LVW IW WK GP TWTLYEEQW L KPLAN R W LA T A AWGIIA L MWLT VR VMKRLQQLEKMQKQQR E E A - 101
Cdd:COG3523 4 RF LT S RWV L SL L GLLA L ALL IW FG GP LLAIGDYRP L ESVLV R L LA I A VILLLW L LVWL VR RWRARRANRALEDALA E Q A e 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 102 ---- V DP LSV E LN A QQRYLDRW L LR L QR ---- YLDN RR F L WQ LPWY MV IGP A G S GKTT L L REG --- FP SDIIYAPEGA RG 170
Cdd:COG3523 84 ekaa A DP SRE E IE A LRERFQEA L AT L KK srlg QGGG RR A L YE LPWY LI IGP P G A GKTT A L VNS glk FP LADKFGKAAI RG 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 171 AEQRLYLTPHVGKQ AV IF D ID G TLCAPADADILH R RL W EHA L GW LK EK R A RQP L NG I I LTLD L P DLLT ADKRR RE HLLQT 250
Cdd:COG3523 164 VGGTRNCDWWFTDE AV LI D TA G RYTTQDSDAEVD R AE W LGF L DL LK KH R P RQP I NG V I VAIS L A DLLT QSPEE RE QHAKA 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 251 LR S RLQ DI R QH L HCQL PVYV VL T RL DLL Q GF AAL F QS L NRQD R DAIL G V TF TRRAHEND D WRT E LN A FWQTWVD R M N LA L 330
Cdd:COG3523 244 LR Q RLQ EL R ER L GIRF PVYV LF T KA DLL A GF SEF F AD L DKEE R EQVW G F TF PYDEKQEF D LLA E FD A EFDELLE R L N ER L 323
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 331 P D LMVAQT -- HT R TSL F S F SR Q MQGSR E P L VSL LE G L LDGEN -- MNVM LRGVY L TS SL Q R G QMD D IFTQSA AR QYR L GNN 406
Cdd:COG3523 324 L D RLQQER dp ER R ALI F G F PQ Q FAALK E A L AEF LE E L FEPNR yq TPPL LRGVY F TS GT Q E G TPI D RVMGAL AR NFG L SRA 403
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 407 P L ASWP l VDTAP YF TRS LF PQALLA E PN LA TES R A W LI R S R RRLTVFS A TGGV A A L L L IT GW HHY Y NG N YQSGIT V LKQA 486
Cdd:COG3523 404 A L PAQS - GSGRS YF LKD LF SKVIFP E AG LA GRN R R W ER R R R WLRRAAY A AAAL A L L G L LG GW TWS Y LN N RRLLAE V EAKV 482
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 487 K A FMDVPPPQGED D - FGNLQ LP L LN PV RD ATLA YG DWG D RSR L - A DM GLYQG RRI GP YVEQT YL QL LEQ RY LP S L FNG L V 564
Cdd:COG3523 483 D A YRALAAALLVA D t DLAAL LP A LN AL RD LPAG YG YRR D DPP L s A GL GLYQG DKL GP AARAA YL RA LEQ LL LP R L ALR L E 562
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 565 KAMNA AP PES EE KLAV L RVMR ML E D KSG R NNEVV K QY MA KR W S E KFH G Q -- RDIQ A Q L MS HLD YA L AH tdwhaerqa G DG 642
Cdd:COG3523 563 EQLRQ AP ADP EE LYEA L KAYL ML G D PEH R DADFL K AW MA RD W R E LLP G N tr AELR A A L ER HLD AL L DL --------- G GD 633
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 643 DAISRWTPYDKP V VS A QK EL SKL P VY QRVY QS LK T RAL GVLPA D LN L R D Q VGP TFDQ VFT SADDN -- K L VV P QFL TR Y G L 720
Cdd:COG3523 634 PSAPPLPLDEAL V AQ A RA EL RRV P LA QRVY AR LK A RAL ATRLP D FT L A D A VGP QAAL VFT RSSGK pl T L GI P GLF TR E G Y 713
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 721 QSY F VKQR DEL V E LT A M D S WVL N L TRSVKY S D ADR AEI QR QLTEQ Y IS DY T A T WRA GMDN L NIRN F E S IG Q LTG AL EQVI 800
Cdd:COG3523 714 HEV F LPAI DEL A E EL A R D D WVL G L SAEDDL S E ADR EQL QR EVRQL Y LA DY I A E WRA FLGD L RLAP F T S LA Q AIA AL RVLS 793
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 801 S G D Q PL Q R A L TVLR D N T QPGVF SE KLSAKE -------- REEA L AEPDYQ L L ---------------- TRLGHE FAP ENST 856
Cdd:COG3523 794 S P D S PL R R L L RAVA D E T TLTRP SE AAAGGA aakgllaa AKAR L LSARGR L G rllgadaaaaaaqvpg QPVDRH FAP LHRL 873
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 857 LAVQKDKESTMQAVY Q Q L T EL HR YL L AI Q NAP V PGK S ALK AVQ lr LDQNS SD P I F A TRQM A KT LP A PL N RW V G R L T DQAW 936
Cdd:COG3523 874 VEANDGGPAPLDDYL Q A L N EL YT YL T AI A NAP D PGK A ALK LAK -- ASGGG SD L I S A LKAE A GR LP E PL R RW L G S L A DQAW 951
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 937 H VV MVE A VHYMEVD WR DS V VKPFNEQL A NN YPF N PRS AQ D AS L DA F E RFF K P D GILD T F Y QQNLK L F I D --- NDLSLEDG 1013
Cdd:COG3523 952 S VV LGG A RAHLNRR WR AE V YPFCRQAI A GR YPF A PRS SR D VA L AD F A RFF G P G GILD S F F QQNLK P F V D tsg RPWRFRPW 1031
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 1014 D NNVI - IREDII AQ LET A QK IRD I FF S - KQNGLGTS F AVET VSL SGNKR R SV L NL DGQL VD Y SQ G RNYTAHL VWP NNM r E 1091
Cdd:COG3523 1032 D GQGL g LSPAVL AQ FQR A AA IRD A FF A g GGAEPSVR F QIKP VSL DPGIS R FT L EI DGQL LR Y RH G PQRPVSV VWP GPG - G 1110
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 1092 G N ESKL TL IGTS G NA P R S I S FS GPWA Q FRL FGAG QLT G V QDGN FTV R F S VDG GAM TY RVHT D TED NPF SGG L FSQ F GLSD 1171
Cdd:COG3523 1111 S N GARI TL TPLD G TS P S S L S YE GPWA L FRL LDKA QLT T V SPDS FTV T F T VDG RSV TY ELRA D SVN NPF ALP L LRG F RCPE 1190
..
gi 556162003 1172 T L 1173
Cdd:COG3523 1191 S L 1192
VI_IcmF
TIGR03348 type VI secretion protein IcmF; Members of this protein family are IcmF homologs and tend to ...
31-1171
0e+00
type VI secretion protein IcmF; Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. [Cellular processes, Pathogenesis]
Pssm-ID: 274531 [Multi-domain]
Cd Length: 1169
Bit Score: 892.08
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 31 L LI L AW I F L LVW IWW K GP TWTLYEEQW L KPLAN R W L AT A AWGIIA L M WL TV R VM --- K R L QQL - EKMQKQQREE A VDPLS 106
Cdd:TIGR03348 1 L SL L GL I L L CIL IWW A GP LLAVGDYKP L ESVWA R L L II A VLLLVW L L WL LI R QW rar R R N QQL l AALAAPTKLK A DAAAE 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 107 V E LNAQQRYLDRW L LR L Q R Y - L DN RR F L WQ LPWY M VIGP A GSGKTTLL REG --- FP ------ SDIIYAPE G A R GAEQRL y 176
Cdd:TIGR03348 81 A E IRELRARFNEA L AL L K R S r L GG RR Y L YD LPWY L VIGP P GSGKTTLL QNS glk FP laerlg AAALRGVG G T R NCDWWF - 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 177 ltphv GKQ AV IF D ID G TLCAPADADILHRRL W EHA LG W L KEK R A RQPLNG IIL T LD L P DLLTAD KRR R EHLLQTL R S RLQ 256
Cdd:TIGR03348 160 ----- TDE AV LI D TA G RYTTQDSDPEEDAAA W LGF LG L L RKH R R RQPLNG VVV T VS L A DLLTAD PAE R KAHARAI R Q RLQ 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 257 DI R QH L HCQL PVY V VLT RL DLL Q GF AAL F QS L NRQD R DAIL G V TF TRRAHEN D DWRT E LN A FWQTWVD R M N LA L PDLMVA 336
Cdd:TIGR03348 235 EL R EQ L GARF PVY L VLT KA DLL A GF EEF F AD L DAEE R EQVW G F TF PLDEADD D NAAE E FA A EFEGLLQ R L N AR L LERLHQ 314
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 337 QTHT -- R TSL F S F SR Q MQGSREP LV SL LE GLLDGENM -- NVM LRGVY L TS SL Q R G QMD D IFTQSA AR QYR L gn N P LASWP 412
Cdd:TIGR03348 315 ERDA ar R AAI F R F PA Q LAALKDR LV QF LE EAFAANRY ee APL LRGVY F TS AT Q E G TPI D RLLGAL AR GFG L -- S P GPPAA 392
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 413 LVDTA - P YF TRS LF PQALLA E PN LA TES R AWLI R S R RRLTVFS A TGGV AAL L L ITG W HHY Y NG N YQSGIT V LK Q AK A FMD 491
Cdd:TIGR03348 393 ARGEG r S YF LKD LF KEVIFP E AG LA GLN R RAER R R R WLRRGAY A AAAL AAL G L LGL W SLS Y LA N RDYLDE V RT Q LE A YRA 472
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 492 VPPPQG - EDDFGNLQ LP L L NPV RDA T L AY G DWGDRSR L - A DM GLYQG RRI G PY V EQ TYL QL L EQRY LP S L FNG L VKAMN A 569
Cdd:TIGR03348 473 LAQAIP a APADVLAL LP A L DAL RDA P L GF G NYDEAPP L l A RF GLYQG DKL G EA V RE TYL RA L QAVL LP R L MQR L EAQLQ A 552
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 570 APPES EE KLAV L R V MR ML E D K S G R NNEV VK QYM A K RW SEKFH G -- QR DIQAQ L MS HL DYA L ahtdwhaerq AG D G DA ISR 647
Cdd:TIGR03348 553 QEQDP EE LYET L K V YL ML G D P S R R DADF VK AWF A S RW EQQYP G ey QR ELREA L LG HL RAL L ---------- SL D Q DA VPA 622
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 648 WTPY D KP V VS A QK EL SKL P VY QRVYQ S LK TRA L GVLPA DL N L R D QV GP TF D Q VF TSADDNK L -- VV P QFL TR Y G LQSY F V 725
Cdd:TIGR03348 623 FPLD D AL V EQ A RA EL RAI P LA QRVYQ R LK LQP L DAALP DL S L A D AL GP QA D L VF ERRSGKP L sl GI P GLY TR A G YHDV F L 702
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 726 K Q RDE LVE LTAM D S WVL N - LTRSVKY S D ADR AEIQ R QLTEQ Y IS DY TAT W R A GMDN L NIRN FES IG Q LTGALEQVI S G D Q 804
Cdd:TIGR03348 703 P Q IAN LVE RALE D A WVL G g ASGNSQL S E ADR QALA R EVRKL Y FA DY INQ W D A LLND L RLKP FES LA Q AAALARALA S P D S 782
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 805 PL Q R A L TVLRDN T ---------------- QPGVF S EKL SA KEREEAL A E P DYQL L T --- RLGHE F A P ENST LA VQKDKES 865
Cdd:TIGR03348 783 PL A R L L RAVARE T rltpvdgapadggsna AAKKL S GLA SA LGAQLLP A A P GAAA L P epg AVERH F E P LRRL LA PNGGPGA 862
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 866 TMQ A VYQQ L T EL HRY L L A IQNA P V PG KS ALKA VQ lrld QNSS D PIF A T RQ M A KT LP A PL NR W V G R L TDQA W HV V MVE A VH 945
Cdd:TIGR03348 863 ALD A LLAA L N EL YQQ L Q A LAAS P N PG QA ALKA RM ---- SGLA D ALS A L RQ A A AR LP E PL RG W L G S L AADT W KL V LQA A RS 938
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 946 YMEVD W RDS V VKPFNEQL A NN YPF N P R S AQ D AS L DA FERFF K P D G I LD T F Y QQNL KL F I D --- N DLSLED GD NNVI - I RE 1021
Cdd:TIGR03348 939 HLNAR W QSE V YSFCQQAI A GR YPF S P N S SK D VP L AD FERFF G P G G L LD S F F QQNL AP F V D tsa N PWRWKG GD GGSL g I SP 1018
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 1022 DII AQ LET A QK IRD I FF - S KQNGLGT SF AVETV SL SG N K RR S VL NL DGQ LVD Y SQ G RNYTAH L V WP NNM r E G NESK LTL I 1100
Cdd:TIGR03348 1019 SVL AQ FQR A AR IRD A FF r S GGGEPAV SF TLKPI SL DP N I RR F VL EV DGQ TLR Y AH G PTRPVS L T WP GPN - D G GLAR LTL K 1097
1130 1140 1150 1160 1170 1180 1190
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 556162003 1101 GTS G NA PR SIS FSGPWA Q FRL FG AG Q LT GVQDGN - FTV RF S V D GGA MT Y RVHTDTE DNPF SG GL F S Q F GLSD 1171
Cdd:TIGR03348 1098 PAD G GS PR TLT FSGPWA L FRL LD AG R LT RTGSRD r LDL RF D V G GGA VR Y ELRAGSA DNPF TS GL L S G F RCPG 1169
IcmF-related
pfam06761 Intracellular multiplication and human macrophage-killing; This family represents a conserved ...
506-818
1.58e-71
Intracellular multiplication and human macrophage-killing; This family represents a conserved region within several bacterial proteins that resemble IcmF, which has been proposed to be involved in Vibrio cholerae cell surface reorganization, resulting in increased adherence to epithelial cells and increased conjugation frequency. Note that many family members are hypothetical proteins.
Pssm-ID: 429106 [Multi-domain]
Cd Length: 305
Bit Score: 241.09
E-value: 1.58e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 506 LP L L NPV RD ATLA -- YGDWGDRSRLADM GLYQG RRI G PYVEQT Y LQL L E Q RY LP S L FNG L VKAMN A - A P P ES E EKLAV L R 582
Cdd:pfam06761 1 LP A L DAL RD LPEG ll DYYQEGPPLSYRF GLYQG DKL G AAARAA Y RRA L R Q LL LP R L AQR L EAQLR A l A G P DP E ALYEA L K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 583 VMR ML E D KSG R NNEVVKQYMAKR W SEKFH GQ RDI Q -- AQ L MS HLD YA LA H tdwh AERQAG D GDAISR wtpydkpvvs A QK 660
Cdd:pfam06761 81 AYL ML G D PER R DAAFLAAWLTRD W ERALP GQ ATG Q qr EA L LA HLD AL LA D ---- PPAIPP D AALVAQ ---------- A RA 146
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 661 E L SKL P VYQ RVYQ S LK TR AL GVLPA D LN L R D Q VGP TFDQ VFT SADDNK L -- V VP QFL TR Y G LQS YF VKQR DEL V EL TAMD 738
Cdd:pfam06761 147 T L ARV P LAE RVYQ R LK RQ AL ASALP D FT L A D A VGP DAAL VFT RSSGKP L se G VP GLF TR A G YHG YF LPAL DEL A EL LLEE 226
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 739 S WVL NLTRSVKY s D AD RAEIQRQ L T E Q Y IS DY T A T W R A GMDN L NIRN F E S IG Q LTGA L EQVISG D Q PL Q R A L TVLR D N T Q 818
Cdd:pfam06761 227 D WVL GDLAASAL - E AD PEQLADD L R E L Y FT DY A A A W Q A FLND L RLVP F A S LA Q AIDV L RLLADP D S PL L R L L QAVA D E T T 305
IcmF-related_N
pfam14331 IcmF-related N-terminal domain; This domain is found in bacterial IcmF (intracellular ...
204-457
7.48e-59
IcmF-related N-terminal domain; This domain is found in bacterial IcmF (intracellular multiplication and human macrophage-killing) proteins. It is found to the N-terminus of the IcmF-related domain, pfam06761.
Pssm-ID: 433873 [Multi-domain]
Cd Length: 258
Bit Score: 203.23
E-value: 7.48e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 204 HRRL W EHA L GW LK EK R A RQP L NG IIL T LD L P DLL T A DKRR RE HLLQT LR S RLQ DI R QH L HCQL PVYVVLT RL DLL Q GF AA 283
Cdd:pfam14331 3 DAAE W LGF L DL LK KH R P RQP I NG VLV T VS L A DLL S A SEEE RE AHARA LR A RLQ EL R ET L GVRF PVYVVLT KA DLL A GF DE 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 284 L F QS L N R QD R DAIL G V TF TRR A HEND D WR t ELNAFWQTWVD R M N LA L P D LMVAQ -- THT R TSL F S F S RQ MQGSREP L VSL 361
Cdd:pfam14331 83 F F AD L D R EE R EQVW G F TF PYD A DDEP D AV - LFDQEFDELLE R L N AR L L D RLQEE rd AER R AAI F A F P RQ FAALKPR L REF 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 362 LE G L LDGEN -- MNVM LRGVY L TS SL Q R G QMD D IFTQSA AR QYR L GNNP L ASWP l VDTAP YF TRS LF PQALLA E PN LA TES 439
Cdd:pfam14331 162 LE E L FAPNR yq EAPL LRGVY F TS AT Q E G TPI D RLAGAL AR RFG L EAAA L PATS - GAGRS YF LHD LF RDVIFP E AG LA GPN 240
250
....*....|....*...
gi 556162003 440 R A W LI R S R RRLTVFS A TG 457
Cdd:pfam14331 241 R R W ER R R R LLRRAGY A AA 258
IcmF_C
pfam06744 Type VI secretion protein IcmF C2-like domain; IcmF_C family represents a conserved region ...
1048-1154
2.34e-26
Type VI secretion protein IcmF C2-like domain; IcmF_C family represents a conserved region situated towards the C-terminal end of IcmF-like proteins. It was thought to be involved in Vibrio cholerae cell surface reorganization that results in increased adherence to epithelial cells leading to an increased conjugation frequency. IcmF as a whole interacts with DotU whereby these bind tightly and form the docking area of the T6SS within the inner membrane. The exact function of this domain is not clear.
Pssm-ID: 429094 [Multi-domain]
Cd Length: 106
Bit Score: 104.34
E-value: 2.34e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556162003 1048 F AVETVS L SGNKR R S VL NL DGQ LVD Y SQ G RNYTAHLV WP NN m R EGNESK LTL IGTS G NAPRSI S FS GPWA Q FRL FGAG Q L 1127
Cdd:pfam06744 1 F ELRPLP L DPGVT R F VL EI DGQ TLR Y RH G PSQWTPFS WP GP - R GSPGAR LTL TDDD G GTVSTL S YE GPWA L FRL LDKA Q V 79
90 100
....*....|....*....|....*..
gi 556162003 1128 T GVQDGN F TVR F S VDG GAMT Y RVHT D T 1154
Cdd:pfam06744 80 T RTDSDR F RLT F D VDG RKAR Y ELRA D S 106
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
