|
Name |
Accession |
Description |
Interval |
E-value |
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
29-773 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 945.09 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 29 FVVRDIRVEGIQRTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTGFFSDVQIQTDNNVVVVVVQERPTIASISFNGMR 108
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 109 EFDSKAITKSLaqVGFGEGRIFDQSMLERAEYELKEQYLAKGKYGVEVTATVTPLPRNRVGVSFDVFEGEVAKIREIRVV 188
Cdd:TIGR03303 81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 189 GSKAFSEGELLDQFDLTTPGWLTWYTNTDKYSREKLEGDIERLRSFYLDQGYLEFTVEPPQVTISPDRKDIYITITVHEG 268
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 269 EPYKVREVKLAGNLMGLDSEINNLVEIKPGEVFSAAKANNSAKAITNYLGDLGYAFANVNPNPQLDRAKHEADVTFYVDP 348
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 349 SRRVYVRRIQIGGNTRTRDEVVRREMRQQEAAWYDAGDIKVSRDRVDRLGYFNEVNVKTDPVpGSPDQVDVNVDVKEKPT 428
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 429 GIINLGVGYGSSEKAILSAGISEDNVFGSGTNLTLQLNTSKTNRAVVLSHTDPYFTKDGISRTTSAYYRVTEPWDNNDGD 508
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 509 YRVKAMGLGMNFGVPISEYDRIFLGGTFERNQIDLYNNSPQAYRDFVDQYGNSTNALIFNTGWSKDTRDSALAPTKGAYT 588
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKDDSDSDSSASYFIKEQGGKFIDSSLSYGWSYDTLDSGYFPTKGSIQ 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 589 RLKGDFSTM--DLKYYLLTAQQQYYLPLGRS--YTLALNGMIDYGRSYGGLDYPVIKNVYAGGIGTVRGYEGASLGPRD- 663
Cdd:TIGR03303 558 RLSQEFAGPggDLKYYKLTYDSEYYIPLSKEddWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGFESNGIGPRDi 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 664 RLTGDYIGGSRRMVANAQLYLPFPGASKDRTLRWFVFTDAGQVAAgsgmscTAGKPDSEVEDPCGWRFSAGIGLSWQSPL 743
Cdd:TIGR03303 638 NDSGDSIGGNAMATANVELIFPLPFLPEDNGLRGSVFFDAGNVWG------TDQKKEGDYSDDSSLRASVGVGLRWISPM 711
|
730 740 750
....*....|....*....|....*....|
gi 565776994 744 GPLQLSYARPLNSKSGDDTQAFQFQIGTGF 773
Cdd:TIGR03303 712 GPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
31-773 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 738.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 31 VRDIRVEGIQRTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTGFFSDVQIQTDNNVVVVVVQERPTIASISFNGMREF 110
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 111 DSKAITKSlaqVGFGEGRIFDQSMLERAEYELKEQYLAKGKYGVEVTATVtplPRNRVGVSFDVFEGEVAKIREIRVVGS 190
Cdd:COG4775 81 KDEDLKKE---LGLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVTITP---ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 191 KAFSEGELLDQFDLTTPGWLTwytNTDKYSREKLEGDIERLRSFYLDQGYLEFTVEPPQVTISPDRKDIYITITVHEGEP 270
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLT---KSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 271 YKVREVKLAGNLmGLDSEINNLVEIKPGEVFSAAKANNSAKAITNYLGDLGYAFANVNPNPQLDRAKHEADVTFYVDPSR 350
Cdd:COG4775 232 YKVGDIKFEGNL-VDEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 351 RVYVRRIQIGGNTRTRDEVVRREMRQQEAAWYDAGDIKVSRDRVDRLGYFNEVNVKTDPVPGSPDQVDVNVDVKEKPTGI 430
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 431 INLGVGYGSSEKAILSAGISEDNVFGSGTNLTLQLNTSKTNRAVVLSHTDPYFTKDGISRTTSAYYRVTEPwdNNDGDYR 510
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDA--SDYSSYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 511 VKAMGLGMNFGVPISEYDRIFLGGTFERNQIDLYNNSPqayRDFVDQYGNSTNaLIFNTGWSKDTRDSALAPTKGAYTRL 590
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDSSP---DYLPDQNGSSNT-SSLGLGLTYDTRDNPLFPTRGSYLSL 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 591 KGDFSTM----DLKYYLLTAQQQYYLPLGRSYTLALNGMIDYGRSYGGlDYPVIKNVYAGGIGTVRGYEGASLGPRdrlt 666
Cdd:COG4775 545 SLEFAGPylggDLEYYKLSADARYYFPLGKKLVLALRAEAGYLGGYGK-DLPFFERFYLGGFGSLRGYEENSLGPR---- 619
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 667 gdyIGGSRRMVANAQLYLPFPgASKDRTLRWFVFTDAGQVAAgsgmsctagkpDSEVEDPCGWRFSAGIGLSWQSPLGPL 746
Cdd:COG4775 620 ---LGGNAYLLGSAELRFPLP-LPPSAGLRGALFVDAGNVWD-----------SGDDFDLSDLRYSAGVGLRWDTPLGPL 684
|
730 740
....*....|....*....|....*..
gi 565776994 747 QLSYARPLNSKSGDDTQAFQFQIGTGF 773
Cdd:COG4775 685 RLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
27-770 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 580.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 27 EPFVVRDIRVEGIQRTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTGFFSDVQIQTDNNVVVVVVQERPTIASISFNG 106
Cdd:PRK11067 22 EGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRDGNTLLVQVKERPTIASITFSG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 107 MREFDSKAITKSLAQVGFGEGRIFDQSMLERAEYELKEQYLAKGKYGVEVTATVTPLPRNRVGVSFdVF-EGEVAKIREI 185
Cdd:PRK11067 102 NKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKL-VFtEGVSAKIQQI 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 186 RVVGSKAFSEGELLDQFDLT--TPGWLtwYTNTDKYSREKLEGDIERLRSFYLDQGYLEFTVEPPQVTISPDRKDIYITI 263
Cdd:PRK11067 181 NIVGNHAFSTDELISRFQLRdeVPWWN--VVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITV 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 264 TVHEGEPYKVREVKLAGNLMGLDSEINNLVEIKPGEVFSAAKANNSAKAITNYLGDLGYAFANVNPNPQLDRAKHEADVT 343
Cdd:PRK11067 259 NITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQTQPEINDADKTVKLH 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 344 FYVDPSRRVYVRRIQIGGNTRTRDEVVRREMRQQEAAWYDAGDIKVSRDRVDRLGYFNEVNVKTDPVPGSPDQVDVNVDV 423
Cdd:PRK11067 339 VNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDVDTQRVPGSPDQVDVVYKV 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 424 KEKPTGIINLGVGYGSSEKAILSAGISEDNVFGSGTNLTLQ--LNTSKTNraVVLSHTDPYFTKDGISRTTSAYYRVTEP 501
Cdd:PRK11067 419 KERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINgtKNDYQTY--AELSVTDPYFTVDGVSLGGRIFYNDFEA 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 502 WDNNDGDYRVKAMGLGMNFGVPISEYDRIFLGGTFERNqiDLYNNSPQA----YRDFVDQYGN-------STNALIFNTG 570
Cdd:PRK11067 497 DDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHN--SLSNMQPQVamwrYLYSMGENPSsdsdnsfKTDDFTFNYG 574
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 571 WSKDTRDSALAPTKGAYTRLKGDFST--MDLKYYLLTAQQQYYLPL--GRSYTLALNGMIDYGRSYGGLDYPVIKNVYAG 646
Cdd:PRK11067 575 WTYNNLDRGYFPTAGNRVNLTGKVTIpgSDNEYYKVTLDTAQYVPLddDHKWVLLGRGRLGYGDGLGGKEMPFYENFYAG 654
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 647 GIGTVRGYEGASLGPR------------------DRLTGDYIGGSRRMVANAQLYLPFPGASKD--RTLRWFVFTDAGQV 706
Cdd:PRK11067 655 GSSTVRGFQSNTIGPKavyypgqasnytqdgakdLCKSDDAVGGNAMAVASLELITPTPFISDKyaNSVRTSFFWDMGTV 734
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565776994 707 ----AAGSGMSCTAGKPDseVEDPCGWRFSAGIGLSWQSPLGPLQLSYARPLNSKSGDDTQAFQFQIG 770
Cdd:PRK11067 735 wdtnWDNTAYTRAAGYPD--YSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIG 800
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
453-769 |
1.92e-69 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 231.09 E-value: 1.92e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 453 NVFGSGTNLTLQLNTSKTNRAVVLSHTDPYFTKDGISRTTSAYYRVTEPWDNNDGDYRVKAMGLGMNFGVPISEYDRIFL 532
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 533 GGTFERNQIDLYNNSPQAYRDFVDQ-YGNSTNALIFNTGWSKDTRDSALAPTKGAYTRLKGDFSTM----DLKYYLLTAQ 607
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIRNYYPSAsGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGPflggDVSYYKLTAD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 608 QQYYLPLG--RSYTLALNGMIDYGRSYGGLDYPVIKNVYAGGIGTVRGYEGASLGPRDrLTGDYIGGSRRMVANAQLYLP 685
Cdd:pfam01103 161 GSYYYPLGkdDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPRD-EDGDALGGNSYVVASLELRFP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 686 FPGAsKDRTLRWFVFTDAGQVaagSGMSCTAGKPDSEVEDPCGWRFSAGIGLSWQSPLGPLQLSYARPLNSKSGDDTQAF 765
Cdd:pfam01103 240 LPFV-PKQSVRGVLFFDAGNV---WNTGSTDPGSSRGARSKAGIRASVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQRF 315
|
....
gi 565776994 766 QFQI 769
Cdd:pfam01103 316 QFGI 319
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
29-773 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 945.09 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 29 FVVRDIRVEGIQRTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTGFFSDVQIQTDNNVVVVVVQERPTIASISFNGMR 108
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 109 EFDSKAITKSLaqVGFGEGRIFDQSMLERAEYELKEQYLAKGKYGVEVTATVTPLPRNRVGVSFDVFEGEVAKIREIRVV 188
Cdd:TIGR03303 81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 189 GSKAFSEGELLDQFDLTTPGWLTWYTNTDKYSREKLEGDIERLRSFYLDQGYLEFTVEPPQVTISPDRKDIYITITVHEG 268
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 269 EPYKVREVKLAGNLMGLDSEINNLVEIKPGEVFSAAKANNSAKAITNYLGDLGYAFANVNPNPQLDRAKHEADVTFYVDP 348
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 349 SRRVYVRRIQIGGNTRTRDEVVRREMRQQEAAWYDAGDIKVSRDRVDRLGYFNEVNVKTDPVpGSPDQVDVNVDVKEKPT 428
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 429 GIINLGVGYGSSEKAILSAGISEDNVFGSGTNLTLQLNTSKTNRAVVLSHTDPYFTKDGISRTTSAYYRVTEPWDNNDGD 508
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 509 YRVKAMGLGMNFGVPISEYDRIFLGGTFERNQIDLYNNSPQAYRDFVDQYGNSTNALIFNTGWSKDTRDSALAPTKGAYT 588
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKDDSDSDSSASYFIKEQGGKFIDSSLSYGWSYDTLDSGYFPTKGSIQ 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 589 RLKGDFSTM--DLKYYLLTAQQQYYLPLGRS--YTLALNGMIDYGRSYGGLDYPVIKNVYAGGIGTVRGYEGASLGPRD- 663
Cdd:TIGR03303 558 RLSQEFAGPggDLKYYKLTYDSEYYIPLSKEddWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGFESNGIGPRDi 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 664 RLTGDYIGGSRRMVANAQLYLPFPGASKDRTLRWFVFTDAGQVAAgsgmscTAGKPDSEVEDPCGWRFSAGIGLSWQSPL 743
Cdd:TIGR03303 638 NDSGDSIGGNAMATANVELIFPLPFLPEDNGLRGSVFFDAGNVWG------TDQKKEGDYSDDSSLRASVGVGLRWISPM 711
|
730 740 750
....*....|....*....|....*....|
gi 565776994 744 GPLQLSYARPLNSKSGDDTQAFQFQIGTGF 773
Cdd:TIGR03303 712 GPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
31-773 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 738.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 31 VRDIRVEGIQRTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTGFFSDVQIQTDNNVVVVVVQERPTIASISFNGMREF 110
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 111 DSKAITKSlaqVGFGEGRIFDQSMLERAEYELKEQYLAKGKYGVEVTATVtplPRNRVGVSFDVFEGEVAKIREIRVVGS 190
Cdd:COG4775 81 KDEDLKKE---LGLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVTITP---ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 191 KAFSEGELLDQFDLTTPGWLTwytNTDKYSREKLEGDIERLRSFYLDQGYLEFTVEPPQVTISPDRKDIYITITVHEGEP 270
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLT---KSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 271 YKVREVKLAGNLmGLDSEINNLVEIKPGEVFSAAKANNSAKAITNYLGDLGYAFANVNPNPQLDRAKHEADVTFYVDPSR 350
Cdd:COG4775 232 YKVGDIKFEGNL-VDEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 351 RVYVRRIQIGGNTRTRDEVVRREMRQQEAAWYDAGDIKVSRDRVDRLGYFNEVNVKTDPVPGSPDQVDVNVDVKEKPTGI 430
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 431 INLGVGYGSSEKAILSAGISEDNVFGSGTNLTLQLNTSKTNRAVVLSHTDPYFTKDGISRTTSAYYRVTEPwdNNDGDYR 510
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDA--SDYSSYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 511 VKAMGLGMNFGVPISEYDRIFLGGTFERNQIDLYNNSPqayRDFVDQYGNSTNaLIFNTGWSKDTRDSALAPTKGAYTRL 590
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDSSP---DYLPDQNGSSNT-SSLGLGLTYDTRDNPLFPTRGSYLSL 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 591 KGDFSTM----DLKYYLLTAQQQYYLPLGRSYTLALNGMIDYGRSYGGlDYPVIKNVYAGGIGTVRGYEGASLGPRdrlt 666
Cdd:COG4775 545 SLEFAGPylggDLEYYKLSADARYYFPLGKKLVLALRAEAGYLGGYGK-DLPFFERFYLGGFGSLRGYEENSLGPR---- 619
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 667 gdyIGGSRRMVANAQLYLPFPgASKDRTLRWFVFTDAGQVAAgsgmsctagkpDSEVEDPCGWRFSAGIGLSWQSPLGPL 746
Cdd:COG4775 620 ---LGGNAYLLGSAELRFPLP-LPPSAGLRGALFVDAGNVWD-----------SGDDFDLSDLRYSAGVGLRWDTPLGPL 684
|
730 740
....*....|....*....|....*..
gi 565776994 747 QLSYARPLNSKSGDDTQAFQFQIGTGF 773
Cdd:COG4775 685 RLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
27-770 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 580.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 27 EPFVVRDIRVEGIQRTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTGFFSDVQIQTDNNVVVVVVQERPTIASISFNG 106
Cdd:PRK11067 22 EGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRDGNTLLVQVKERPTIASITFSG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 107 MREFDSKAITKSLAQVGFGEGRIFDQSMLERAEYELKEQYLAKGKYGVEVTATVTPLPRNRVGVSFdVF-EGEVAKIREI 185
Cdd:PRK11067 102 NKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKL-VFtEGVSAKIQQI 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 186 RVVGSKAFSEGELLDQFDLT--TPGWLtwYTNTDKYSREKLEGDIERLRSFYLDQGYLEFTVEPPQVTISPDRKDIYITI 263
Cdd:PRK11067 181 NIVGNHAFSTDELISRFQLRdeVPWWN--VVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITV 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 264 TVHEGEPYKVREVKLAGNLMGLDSEINNLVEIKPGEVFSAAKANNSAKAITNYLGDLGYAFANVNPNPQLDRAKHEADVT 343
Cdd:PRK11067 259 NITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQTQPEINDADKTVKLH 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 344 FYVDPSRRVYVRRIQIGGNTRTRDEVVRREMRQQEAAWYDAGDIKVSRDRVDRLGYFNEVNVKTDPVPGSPDQVDVNVDV 423
Cdd:PRK11067 339 VNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDVDTQRVPGSPDQVDVVYKV 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 424 KEKPTGIINLGVGYGSSEKAILSAGISEDNVFGSGTNLTLQ--LNTSKTNraVVLSHTDPYFTKDGISRTTSAYYRVTEP 501
Cdd:PRK11067 419 KERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINgtKNDYQTY--AELSVTDPYFTVDGVSLGGRIFYNDFEA 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 502 WDNNDGDYRVKAMGLGMNFGVPISEYDRIFLGGTFERNqiDLYNNSPQA----YRDFVDQYGN-------STNALIFNTG 570
Cdd:PRK11067 497 DDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHN--SLSNMQPQVamwrYLYSMGENPSsdsdnsfKTDDFTFNYG 574
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 571 WSKDTRDSALAPTKGAYTRLKGDFST--MDLKYYLLTAQQQYYLPL--GRSYTLALNGMIDYGRSYGGLDYPVIKNVYAG 646
Cdd:PRK11067 575 WTYNNLDRGYFPTAGNRVNLTGKVTIpgSDNEYYKVTLDTAQYVPLddDHKWVLLGRGRLGYGDGLGGKEMPFYENFYAG 654
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 647 GIGTVRGYEGASLGPR------------------DRLTGDYIGGSRRMVANAQLYLPFPGASKD--RTLRWFVFTDAGQV 706
Cdd:PRK11067 655 GSSTVRGFQSNTIGPKavyypgqasnytqdgakdLCKSDDAVGGNAMAVASLELITPTPFISDKyaNSVRTSFFWDMGTV 734
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565776994 707 ----AAGSGMSCTAGKPDseVEDPCGWRFSAGIGLSWQSPLGPLQLSYARPLNSKSGDDTQAFQFQIG 770
Cdd:PRK11067 735 wdtnWDNTAYTRAAGYPD--YSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIG 800
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
453-769 |
1.92e-69 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 231.09 E-value: 1.92e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 453 NVFGSGTNLTLQLNTSKTNRAVVLSHTDPYFTKDGISRTTSAYYRVTEPWDNNDGDYRVKAMGLGMNFGVPISEYDRIFL 532
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 533 GGTFERNQIDLYNNSPQAYRDFVDQ-YGNSTNALIFNTGWSKDTRDSALAPTKGAYTRLKGDFSTM----DLKYYLLTAQ 607
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIRNYYPSAsGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGPflggDVSYYKLTAD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 608 QQYYLPLG--RSYTLALNGMIDYGRSYGGLDYPVIKNVYAGGIGTVRGYEGASLGPRDrLTGDYIGGSRRMVANAQLYLP 685
Cdd:pfam01103 161 GSYYYPLGkdDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPRD-EDGDALGGNSYVVASLELRFP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 686 FPGAsKDRTLRWFVFTDAGQVaagSGMSCTAGKPDSEVEDPCGWRFSAGIGLSWQSPLGPLQLSYARPLNSKSGDDTQAF 765
Cdd:pfam01103 240 LPFV-PKQSVRGVLFFDAGNV---WNTGSTDPGSSRGARSKAGIRASVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQRF 315
|
....
gi 565776994 766 QFQI 769
Cdd:pfam01103 316 QFGI 319
|
|
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
221-773 |
8.61e-69 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 237.10 E-value: 8.61e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 221 REKLEGDIERLRSFYLDQGYLEftvepPQVTISPDRKD--IYITITVHEGEPYKVREVKLAGNLMGL-DSEINNLVE--- 294
Cdd:COG0729 54 RRLARADPERIRAALRAEGYYS-----PTVTIRLDGRDgpWTVTITVDPGPPVRIGKVDIELLGEAAqDPARRKLLAawp 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 295 IKPGEVFSAAKANNSAKAITNYLGDLGYAFANV-NPNPQLDRAKHEADVTFYVDPSRRVYVRRIQIGGNTRTRDEVVRRE 373
Cdd:COG0729 129 LKPGDPLRHGAYEAAKSALLDALRERGYPDARFtQSRAEVDPATNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 374 MRQQEAAWYDAGDIKVSRDRVDRLGYFNEVNVKTDPVPGSPDQVDVNVDVKEKPTGIINLGVGYGSSEKAILSAGISEDN 453
Cdd:COG0729 209 APFKPGEPYSPDKLLELQQRLQSTGYFSSVRVTPDEDPAPDGTVPVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRN 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 454 VFGSGTNLTLQLNTSKTNRAVVLSHTDPYFTKDGISRTTSAYYRvtepwDNNDGDYRVKAMGLGMNFGVPISEYDRIFLG 533
Cdd:COG0729 289 LFGRGHRLRLELELSQPEQSLSADYRIPPLFPLGQYLSLGAGLE-----REDTDDYDSRSLTLGAGRTRRLSDGWTRSLG 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 534 GTFERNQIDLYNNSpqayrdfvdqygNSTNALIFNTGWSKDTRDSALAPTKGAYTRLKGDFSTM----DLKYYLLTAQQQ 609
Cdd:COG0729 364 LRLLYERFTDGDDD------------RTYTLLSPGLSWTRDRRDDPLDPTRGYRLSLELGPGSKllgsDTSFLRLYARGS 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 610 YYLPLGRSYTLALNGmiDYGRSYGG--LDYPVIKNVYAGGIGTVRGYEGASLGPRDRlTGDYIGGSRRMVANAQLYLPFP 687
Cdd:COG0729 432 WYRPLGERHRLAGRA--ELGAILGAdfDDVPPSLRFFAGGDGSVRGYGYQSLGPRDG-DGDVIGGRSLAVGSLEYRYRVT 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 688 GaskdrTLRWFVFTDAGQVAAGSgmsctagkPDSEvedpcgWRFSAGIGLSWQSPLGPLQLSYARPLNSKSGDDtqaFQF 767
Cdd:COG0729 509 E-----NWGLAVFVDAGNAFNDF--------PFSD------LKVGAGLGLRWYSPVGPIRLDLAYPLNDRDDSS---FRL 566
|
....*.
gi 565776994 768 QIGTGF 773
Cdd:COG0729 567 YISLGQ 572
|
|
| FhaC |
COG2831 |
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular ... |
267-773 |
5.58e-19 |
|
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442079 [Multi-domain] Cd Length: 547 Bit Score: 91.17 E-value: 5.58e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 267 EGEPYKVREVKLAGNLMGLDSEINNLVEIKPGEVFSAAKANNSAKAITNYLGDLGYAFANVN-PNPQLDRAKheadVTFY 345
Cdd:COG2831 60 EGPCFTIKRIRVEGNTVLPEEELQALLAPYLGRCLTLADLNALADAITNLYRDRGYITSRAYlPPQDLSDGV----LRIQ 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 346 VDPSRrvyVRRIQIGGNTRTRDEVVRREMRQQEaawydaGDIkVSRDRVDR-LGYFNE---VNVKTDPVPGS-PDQVDVN 420
Cdd:COG2831 136 VVEGR---VGRIRVEGNSRLSRAYLRSALPLAE------GKP-LNLRDLEQgLLLLNRlpgVQVTAELRPGTePGTSDLV 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 421 VDVKEKPTGIINLGV---GYGSSEKAILSAGISEDNVFGSGTNLTLQLNTS---KTNRAVVLSHTDPYFTKDGISRTTSA 494
Cdd:COG2831 206 VTVEEAKPFRGSLGLdnsGSPSTGRYRLGASLSLDNLLGLGDQLSLSYSRSldgDGSRSYSLSYSVPLGYWGLTLGLSYS 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 495 YYRVTEPWDNNDGDYRVKAMGLGMNFGVPI--SEYDRIFLGGTFE----RNQIDLYNNSPQAYR--------DFVDQYGN 560
Cdd:COG2831 286 RYRSRVGGPFGTLDISGKSQTYGLRLSYPLirSRDQKLSLSLGLDykdsRNYLLGTEIEVQRRRlsvlrlglSYTRRLGG 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 561 STNAL----IFNTGWSKDTRD-SALAPTKGAYTRLKGDFstmdlkyylltaqqQYYLPLGRSYTLALNGMIDYgrSYGGL 635
Cdd:COG2831 366 GVLSLslsfSQGLDWLGATPApDASRGPDGRFTKLRLSA--------------SRVQPLPQDFSLLLRLDGQY--SSDPL 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 636 DYPviKNVYAGGIGTVRGYegaslgPRDRLTGDyiggsRRMVANAQLYLPFPGASKDRTLRWFVFTDAGQVAAgsgmsct 715
Cdd:COG2831 430 LSS--EQFSLGGRYSVRGY------DEGELSGD-----NGWYLSNELRWPLPRLSLLGGLQLYAFLDAGRVWN------- 489
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 565776994 716 agkpDSEVEDPCGWRF--SAGIGLSWQspLGP---LQLSYARPLNSKSGD-DTQAFQFQIGTGF 773
Cdd:COG2831 490 ----NSALPGQLNGRTlaGAGLGLRLS--LGKnlsLDLDYARPLGDPDGDtDNRRLYFSLSYSF 547
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
181-268 |
2.96e-16 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 73.92 E-value: 2.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 181 KIREIRVVGSKAFSEGELLDQFDLTtPGwltwytntDKYSREKLEGDIERLRSFYLDQGYLEFTVEpPQVTISPDRKDIY 260
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLK-EG--------DVYNREKLEEDKEALKDRYGRLGYFDASVS-TNVEIDDEVNTVD 70
|
....*...
gi 565776994 261 ITITVHEG 268
Cdd:pfam07244 71 LTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
272-348 |
2.31e-13 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 65.83 E-value: 2.31e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565776994 272 KVREVKLAGNLMGLDSEINNLVEIKPGEVFSAAKANNSAKAITNYLGDLGYAFANVNPNPQLDRAKHEADVTFYVDP 348
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDE 77
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
353-426 |
1.46e-11 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 60.82 E-value: 1.46e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 565776994 353 YVRRIQIGGNTRTRDEVVRREMRQQEAAWYDA----GDIKVSRDRVDRLGYFN-EVNVKTDPvPGSPDQVDVNVDVKEK 426
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNRekleEDKEALKDRYGRLGYFDaSVSTNVEI-DDEVNTVDLTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
98-177 |
4.16e-11 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 59.28 E-value: 4.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 98 TIASISFNGMREFDSKAITKslaQVGFGEGRIFDQSMLERAEYELKEQYLAKGKYGVEVTATVT-PLPRNRVGVSFDVFE 176
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRR---LLGLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEiDDEVNTVDLTFNVDE 77
|
.
gi 565776994 177 G 177
Cdd:pfam07244 78 G 78
|
|
| 3a0901s03IAP75 |
TIGR00992 |
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved ... |
313-773 |
8.41e-10 |
|
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130065 [Multi-domain] Cd Length: 718 Bit Score: 62.28 E-value: 8.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 313 ITNYLGDLGYAFANVNPNPQLDRAK-----HEADVTfyvdpsrRVYVRRIQIGGNT---RTRDEVVRREMRQQEAAWY-- 382
Cdd:TIGR00992 232 VQEWYHNEGYACAQVVNFGNLNTDEvvcevVEGDIT-------NLQIQFFDKLGNVvegNTRDPVVTRELPKQLKPGDvf 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 383 --DAGdiKVSRDRVDRLGYFNEVNVKTDPVPGSPDQVDVNVDVKEKPTGIINLGVGY----GSSEKAILSA-------GI 449
Cdd:TIGR00992 305 niEAG--KTALQNINSLGLFSNIEVNPRPDEMNEGEIIVEIKLKELEQKSAEVSTEWsivpGRGGRPTLASsqpggtiTF 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 450 SEDNVFGSGTNLTLQLNTS-----KTNRAVVLSHTDPYFTKDGISR----TTSAYYR--VTEPWDNNDG-----DYRVKA 513
Cdd:TIGR00992 383 EHRNLQGLNRSLGGSVTTSnflnpQDDLLFKVEYTHPYLDGVDNPRnrtyTASCFNSrkLSPVFTGGPGvnevpSIWVDR 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 514 MGLGMNFGVPISE-----YDRIFLGGTFERN--------QIDLYNNSPQAYRDFVDQYGNSTNALIF-NTGWSKDTRDSA 579
Cdd:TIGR00992 463 AGVKANITENFARqskftYGLVMEEIFTRDEsrhinangQRSLPSGPISADGPPTTLSGTGVDRMAFlQANITRDNTNFV 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 580 LAPTKGAYTRLKGDFST-MDLKYYLLTAQQ---QYYLPL-------GRS--YTLALNGmiDYGRSYGglDYPVIKNVYAG 646
Cdd:TIGR00992 543 NGPTVGSRVRFQVDQGLgVGSGFPFFNRHQltyTKFIQLnwvelgaGKSppPVLVLHG--HYGGCVG--DLPSYDAFILG 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 647 GIGTVRGYEGASLGprdrltgdyiGGSRRMVANAQLYLPFPGASKdrtlrwFVFTDAGQVAAGSGmsCTAGKPdSEVEDP 726
Cdd:TIGR00992 619 GPYSVRGYNMGELG----------AARNIFEATAEIRIPIKATHV------YAFVEHGSDLGSSK--DVKGNP-TIVYRR 679
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 565776994 727 CGWRFSAGIGLSWQSPLGPlqlsYARPLNSKSGddtqAFQFQIGTGF 773
Cdd:TIGR00992 680 PGQGSSYGAGVKLGLVRAE----YAVDHNEGTG----AIFFRFGERF 718
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
27-106 |
2.80e-07 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 53.94 E-value: 2.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565776994 27 EPFVVRDIRVEGIQRTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTGFFSDVQIQTDNNVVVVVV-------QERPTi 99
Cdd:COG4775 310 PRVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQvdlvvdvKEKPT- 388
|
....*..
gi 565776994 100 ASISFNG 106
Cdd:COG4775 389 GSLSLGA 395
|
|
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
33-85 |
1.49e-04 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 45.27 E-value: 1.49e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 565776994 33 DIRVEGIQRTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTGFFSDVQIQTD 85
Cdd:COG0729 191 EITVEGLSRVPEDFLRRLAPFKPGEPYSPDKLLELQQRLQSTGYFSSVRVTPD 243
|
|
| |
