|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
131-395 |
7.75e-136 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 390.15 E-value: 7.75e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 131 ETTLITSDLGVGPSTELVETLRKRLSIDGIDDPAQAKEALREELVKLVDPSlDRSLNLdhEEGKPAVVMMVGVNGTGKTT 210
Cdd:COG0552 39 EELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKEELLEILDPV-DKPLAI--EEKKPFVILVVGVNGVGKTT 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 211 TVGKLGRVLVAEDKKVLFGaadtfraaaaEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIEQGVDVVLVDTAGRLH 290
Cdd:COG0552 116 TIGKLAHRLKAEGKSVLLAagdtfraaaiEQLEVWGERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLH 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 291 TKTGLMDELGKVKRVVEKKAP--VSEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGGIVVQVQRELGVPV 368
Cdd:COG0552 196 NKKNLMEELKKIKRVIKKLDPdaPHEVLLVLDATTGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPI 275
|
250 260
....*....|....*....|....*..
gi 567338376 369 KFIGLGEGADDLAPFEADGFVAGLLGE 395
Cdd:COG0552 276 KFIGVGEGIDDLRPFDAEEFVDALFGE 302
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
131-395 |
6.45e-134 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 385.99 E-value: 6.45e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 131 ETTLITSDLGVGPSTELVETLRKRLSIDGIDDPAQAKEALREELVKLVDPsLDRSLNLdhEEGKPAVVMMVGVNGTGKTT 210
Cdd:PRK10416 53 EELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEELAEILEP-VEKPLNI--EEKKPFVILVVGVNGVGKTT 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 211 TVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIEQGVDVVLVDTAGRLH 290
Cdd:PRK10416 130 TIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLH 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 291 TKTGLMDELGKVKRVVEKKAP--VSEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGGIVVQVQRELGVPV 368
Cdd:PRK10416 210 NKTNLMEELKKIKRVIKKADPdaPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPI 289
|
250 260
....*....|....*....|....*..
gi 567338376 369 KFIGLGEGADDLAPFEADGFVAGLLGE 395
Cdd:PRK10416 290 KFIGVGEGIDDLQPFDAEEFVDALLGG 316
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
131-393 |
2.48e-108 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 319.59 E-value: 2.48e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 131 ETTLITSDLGVGPSTELVETLRKRLSIDGIDDPAQAKEALREELVKLVDPSLDRS--LNLDHEEGKPAVVMMVGVNGTGK 208
Cdd:TIGR00064 11 EEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNtdLELIVEENKPNVILFVGVNGVGK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 209 TTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIEQGVDVVLVDTAGR 288
Cdd:TIGR00064 91 TTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGR 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 289 LHTKTGLMDELGKVKRVVEKKAPV--SEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGGIVVQVQRELGV 366
Cdd:TIGR00064 171 LQNKVNLMDELKKIKRVIKKVDKDapDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAYELKL 250
|
250 260
....*....|....*....|....*..
gi 567338376 367 PVKFIGLGEGADDLAPFEADGFVAGLL 393
Cdd:TIGR00064 251 PIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
196-392 |
3.60e-93 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 277.92 E-value: 3.60e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 196 AVVMMVGVNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIE 275
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 276 QGVDVVLVDTAGRLHTKTGLMDELGKVKRVVEKKAPVS--EVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAK 353
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAphEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 567338376 354 GGIVVQVQRELGVPVKFIGLGEGADDLAPFEADGFVAGL 392
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
197-392 |
5.04e-82 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 249.38 E-value: 5.04e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 197 VVMMVGVNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIEQ 276
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 277 GVDVVLVDTAGRLHTKTGLMDELGKVKRVVekkAPVsEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGGI 356
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVV---APD-EVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGA 157
|
170 180 190
....*....|....*....|....*....|....*.
gi 567338376 357 VVQVQRELGVPVKFIGLGEGADDLAPFEADGFVAGL 392
Cdd:pfam00448 158 ALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
195-394 |
2.30e-81 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 247.71 E-value: 2.30e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 195 PAVVMMVGVNGTGKTTTVGKLGRVLVAED-KKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAG 273
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 274 IEQGVDVVLVDTAGRLHTKTGLMDELGKVKRVVEkkapVSEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAK 353
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK----PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAK 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 567338376 354 GGIVVQVQRELGVPVKFIGLGEGADDLAPFEADGFVAGLLG 394
Cdd:smart00962 157 GGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
131-395 |
7.75e-136 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 390.15 E-value: 7.75e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 131 ETTLITSDLGVGPSTELVETLRKRLSIDGIDDPAQAKEALREELVKLVDPSlDRSLNLdhEEGKPAVVMMVGVNGTGKTT 210
Cdd:COG0552 39 EELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKEELLEILDPV-DKPLAI--EEKKPFVILVVGVNGVGKTT 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 211 TVGKLGRVLVAEDKKVLFGaadtfraaaaEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIEQGVDVVLVDTAGRLH 290
Cdd:COG0552 116 TIGKLAHRLKAEGKSVLLAagdtfraaaiEQLEVWGERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLH 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 291 TKTGLMDELGKVKRVVEKKAP--VSEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGGIVVQVQRELGVPV 368
Cdd:COG0552 196 NKKNLMEELKKIKRVIKKLDPdaPHEVLLVLDATTGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPI 275
|
250 260
....*....|....*....|....*..
gi 567338376 369 KFIGLGEGADDLAPFEADGFVAGLLGE 395
Cdd:COG0552 276 KFIGVGEGIDDLRPFDAEEFVDALFGE 302
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
131-395 |
6.45e-134 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 385.99 E-value: 6.45e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 131 ETTLITSDLGVGPSTELVETLRKRLSIDGIDDPAQAKEALREELVKLVDPsLDRSLNLdhEEGKPAVVMMVGVNGTGKTT 210
Cdd:PRK10416 53 EELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEELAEILEP-VEKPLNI--EEKKPFVILVVGVNGVGKTT 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 211 TVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIEQGVDVVLVDTAGRLH 290
Cdd:PRK10416 130 TIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLH 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 291 TKTGLMDELGKVKRVVEKKAP--VSEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGGIVVQVQRELGVPV 368
Cdd:PRK10416 210 NKTNLMEELKKIKRVIKKADPdaPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPI 289
|
250 260
....*....|....*....|....*..
gi 567338376 369 KFIGLGEGADDLAPFEADGFVAGLLGE 395
Cdd:PRK10416 290 KFIGVGEGIDDLQPFDAEEFVDALLGG 316
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
131-393 |
2.48e-108 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 319.59 E-value: 2.48e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 131 ETTLITSDLGVGPSTELVETLRKRLSIDGIDDPAQAKEALREELVKLVDPSLDRS--LNLDHEEGKPAVVMMVGVNGTGK 208
Cdd:TIGR00064 11 EEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNtdLELIVEENKPNVILFVGVNGVGK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 209 TTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIEQGVDVVLVDTAGR 288
Cdd:TIGR00064 91 TTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGR 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 289 LHTKTGLMDELGKVKRVVEKKAPV--SEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGGIVVQVQRELGV 366
Cdd:TIGR00064 171 LQNKVNLMDELKKIKRVIKKVDKDapDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAYELKL 250
|
250 260
....*....|....*....|....*..
gi 567338376 367 PVKFIGLGEGADDLAPFEADGFVAGLL 393
Cdd:TIGR00064 251 PIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
196-392 |
3.60e-93 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 277.92 E-value: 3.60e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 196 AVVMMVGVNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIE 275
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 276 QGVDVVLVDTAGRLHTKTGLMDELGKVKRVVEKKAPVS--EVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAK 353
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAphEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 567338376 354 GGIVVQVQRELGVPVKFIGLGEGADDLAPFEADGFVAGL 392
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
197-392 |
5.04e-82 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 249.38 E-value: 5.04e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 197 VVMMVGVNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIEQ 276
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 277 GVDVVLVDTAGRLHTKTGLMDELGKVKRVVekkAPVsEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGGI 356
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVV---APD-EVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGA 157
|
170 180 190
....*....|....*....|....*....|....*.
gi 567338376 357 VVQVQRELGVPVKFIGLGEGADDLAPFEADGFVAGL 392
Cdd:pfam00448 158 ALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
195-394 |
2.30e-81 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 247.71 E-value: 2.30e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 195 PAVVMMVGVNGTGKTTTVGKLGRVLVAED-KKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAG 273
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 274 IEQGVDVVLVDTAGRLHTKTGLMDELGKVKRVVEkkapVSEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAK 353
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK----PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAK 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 567338376 354 GGIVVQVQRELGVPVKFIGLGEGADDLAPFEADGFVAGLLG 394
Cdd:smart00962 157 GGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
196-392 |
1.85e-67 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 211.85 E-value: 1.85e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 196 AVVMMVGVNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIE 275
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 276 QGVDVVLVDTAGRLHTKTGLMDELGKVKRVVEKKapvsEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGG 355
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPD----EVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGG 156
|
170 180 190
....*....|....*....|....*....|....*..
gi 567338376 356 IVVQVQRELGVPVKFIGLGEGADDLAPFEADGFVAGL 392
Cdd:cd03115 157 AALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
171-394 |
5.73e-65 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 212.96 E-value: 5.73e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 171 REELVKLVDPSlDRSLNLDHEegKPAVVMMVGVNGTGKTTTVGKLGRVLVAEDKKVL-----------Fgaadtfraaaa 239
Cdd:COG0541 79 HDELVELLGGE-NEELNLAKK--PPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLlvaadvyrpaaI----------- 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 240 EQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIEQGVDVVLVDTAGRLHTKTGLMDELGKVKRVVEkkaPvSEVLLVL 319
Cdd:COG0541 145 EQLKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVN---P-DETLLVV 220
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 567338376 320 DATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGGIVVQVQRELGVPVKFIGLGEGADDLAPFEADGFVAGLLG 394
Cdd:COG0541 221 DAMTGQDAVNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILG 295
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
130-395 |
8.63e-63 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 204.82 E-value: 8.63e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 130 FETTLITSDLGVGPSTELVETLRKRL---SIDGIDDPAQA-KEALREELVKLVDPslDRSLNLDHE---EGKPAVVMMVG 202
Cdd:PRK14974 70 LELELLESDVALEVAEEILESLKEKLvgkKVKRGEDVEEIvKNALKEALLEVLSV--GDLFDLIEEiksKGKPVVIVFVG 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 203 VNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIEQGVDVVL 282
Cdd:PRK14974 148 VNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVL 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 283 VDTAGRLHTKTGLMDELGKVKRVVEKKApvseVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGGIVVQVQR 362
Cdd:PRK14974 228 IDTAGRMHTDANLMDELKKIVRVTKPDL----VIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAY 303
|
250 260 270
....*....|....*....|....*....|...
gi 567338376 363 ELGVPVKFIGLGEGADDLAPFEADGFVAGLLGE 395
Cdd:PRK14974 304 VIGKPILFLGVGQGYDDLIPFDPDWFVDKLLGE 336
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
196-386 |
3.10e-55 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 180.49 E-value: 3.10e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 196 AVVMMVGVNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIE 275
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 276 QGVDVVLVDTAGRLHTKTGLMDELGKVKRVVEKkapvSEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGG 355
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLNP----DEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGG 156
|
170 180 190
....*....|....*....|....*....|.
gi 567338376 356 IVVQVQRELGVPVKFIGLGEGADDLAPFEAD 386
Cdd:cd18539 157 AALSIRHVTGKPIKFIGVGEKIEDLEPFHPD 187
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
170-394 |
2.97e-53 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 182.71 E-value: 2.97e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 170 LREELVKLvdpsLDRSLNLDHEEGKPAVVMMVGVNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRV 249
Cdd:PRK00771 74 VYEELVKL----LGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKI 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 250 GVQTIRGEEGTDPASIAFNAVDAGIEQgvDVVLVDTAGRLHTKTGLMDELGKVKRVVEkkaPvSEVLLVLDATTGQNGLT 329
Cdd:PRK00771 150 GVPFYGDPDNKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVK---P-DEVLLVIDATIGQQAKN 223
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 567338376 330 QARIFAEVVDVTGIVLTKLDGSAKGGIVVQVQRELGVPVKFIGLGEGADDLAPFEADGFVAGLLG 394
Cdd:PRK00771 224 QAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG 288
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
197-392 |
1.21e-41 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 145.03 E-value: 1.21e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 197 VVMMVGVNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIEQ 276
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKKE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 277 GVDVVLVDTAGRLHTKTGLMDELGKVKRVVEkkaPvSEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGGI 356
Cdd:cd17875 82 KFDIIIVDTSGRHKQEEELFEEMKQISDAVK---P-DEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGG 157
|
170 180 190
....*....|....*....|....*....|....*.
gi 567338376 357 VVQVQRELGVPVKFIGLGEGADDLAPFEADGFVAGL 392
Cdd:cd17875 158 ALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
131-394 |
4.72e-35 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 133.81 E-value: 4.72e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 131 ETTLITSDLGVGPSTELVETLRKRLSI----DGIDDPAQAKEALREELVKLVDPSLDRslnLDHEEGKPAVVMMVGVNGT 206
Cdd:TIGR01425 35 CTALLESDVNPKLVRQMRNNIKKKINLediaSGINKRKLIQDAVFEELCNLVDPGVEA---FTPKKGKTCVIMFVGLQGA 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 207 GKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIEQGVDVVLVDTA 286
Cdd:TIGR01425 112 GKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEGVEKFRKEKFDIIIVDTS 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 287 GRLHTKTGLMDELGKVKRVVEKkapvSEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLDGSAKGGIVVQVQRELGV 366
Cdd:TIGR01425 192 GRHKQEKELFEEMQQVREAIKP----DSIIFVMDGSIGQAAFGQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKS 267
|
250 260
....*....|....*....|....*...
gi 567338376 367 PVKFIGLGEGADDLAPFEADGFVAGLLG 394
Cdd:TIGR01425 268 PIIFIGTGEHVDEFEIFDAEPFVSKLLG 295
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
197-392 |
4.00e-26 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 104.23 E-value: 4.00e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 197 VVMMVGVNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASIAFNAVDAGIEQ 276
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 277 GVDVVLVDTAGRLHTKTGLMDELGKVKRVVEKKApvseVLLVLDATTGQNGLTQARIF------------AEVVDvtGIV 344
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDL----VLFVGEALVGNDAVDQLKKFnqaladyspsdnPRLID--GIV 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 567338376 345 LTKLDG-SAKGGIVVQVQRELGVPVKFIGLGEGADDLAPFEADGFVAGL 392
Cdd:cd17876 156 LTKFDTiDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
138-395 |
7.32e-22 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 95.70 E-value: 7.32e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 138 DLGVGPS--TELVETLRKRLSIDgiddpaQAKEALREELVKLVDPSLDRSLnldheeGKPAVVMMVGVNGTGKTTTVGKL 215
Cdd:COG1419 117 EAGVSPElaRELLEKLPEDLSAE------EAWRALLEALARRLPVAEDPLL------DEGGVIALVGPTGVGKTTTIAKL 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 216 -GRVLVAEDKKVLF--------GaadtfraaAAEQLTTWGDRVGVqtirgeegtdPASIAFNAVDAGIE----QGVDVVL 282
Cdd:COG1419 185 aARFVLRGKKKVALittdtyriG--------AVEQLKTYARILGV----------PVEVAYDPEELKEAlerlRDKDLVL 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 283 VDTAGRLHTKTGLMDELGKVKRVVEKKapvsEVLLVLDATTgqNGLTQARIFA--EVVDVTGIVLTKLDGSAKGGIVVQV 360
Cdd:COG1419 247 IDTAGRSPRDPELIEELKALLDAGPPI----EVYLVLSATT--KYEDLKEIVEafSSLGLDGLILTKLDETASLGSILNL 320
|
250 260 270
....*....|....*....|....*....|....*.
gi 567338376 361 QRELGVPVKFIGLGEG-ADDLAPFEADGFVAGLLGE 395
Cdd:COG1419 321 LIRTGLPLSYITNGQRvPEDIEVADPERLARLLLGG 356
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
197-390 |
6.89e-18 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 81.06 E-value: 6.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 197 VVMMVGVNGTGKTTTVGKLGRVLVAE-DKKVLFGAADTFRAAAAEQLTTWGDRVGVqtirgeegtdPASIAFNAVDAGIE 275
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKkGKKVALITTDTYRIGAVEQLKTYAEIMGI----------PVEVAEDPEDLADA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 276 ----QGVDVVLVDTAGRLHTKTGLMDELgkvKRVVEKKAPVsEVLLVLDATtgqnglTQARIFAEVVD------VTGIVL 345
Cdd:cd17873 72 lerlSDRDLILIDTAGRSPRDKEQLEEL---KELLGAGEDI-EVHLVLSAT------TKAKDLKEIIErfsplgYRGLIL 141
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 567338376 346 TKLDGSAKGGIVVQVQRELGVPVKFIGLG-EGADDLAPFEADGFVA 390
Cdd:cd17873 142 TKLDETTSLGSVLSVLAESQLPVSYVTTGqRVPEDIEVASPLRLAR 187
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
138-395 |
1.79e-17 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 83.40 E-value: 1.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 138 DLGVGPstELVETLRKRLSIDGIDDPAQAKEALREELVKLVDPSLDRSLnldhEEGKpaVVMMVGVNGTGKTTTVGKL-G 216
Cdd:PRK05703 172 RSGLSP--EIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRVEDIL----KQGG--VVALVGPTGVGKTTTLAKLaA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 217 R-VLVAEDKKVLF--------GaadtfraaAAEQLTTWGDRVGVqtirgeegtdPASIAFNAVDAG--IEQ--GVDVVLV 283
Cdd:PRK05703 244 RyALLYGKKKVALitldtyriG--------AVEQLKTYAKIMGI----------PVEVVYDPKELAkaLEQlrDCDVILI 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 284 DTAGRLHTKTGLMDELgkvKRVVEKKAPVSEVLLVLDATTgQNGLTQARI--FaEVVDVTGIVLTKLDGSAKGGIVVQVQ 361
Cdd:PRK05703 306 DTAGRSQRDKRLIEEL---KALIEFSGEPIDVYLVLSATT-KYEDLKDIYkhF-SRLPLDGLIFTKLDETSSLGSILSLL 380
|
250 260 270
....*....|....*....|....*....|....*
gi 567338376 362 RELGVPVKFIGLG-EGADDLAPFEADGFVAGLLGE 395
Cdd:PRK05703 381 IESGLPISYLTNGqRVPDDIKVANPEELVRLLLGG 415
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
145-375 |
2.12e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 55.68 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 145 TELVETLRKRLSIDGIDDPAQAKEALREELVKLVDPSLDRSLNLdheegKPAVVMMVGVNGTGKTTTVGKLGRV--LVAE 222
Cdd:PRK12723 129 KDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTIKCSGSIIDNL-----KKRVFILVGPTGVGKTTTIAKLAAIygINSD 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 223 DKK--VLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDPASiafnavDAGIEQGVDVVLVDTAGRlhTKTGLMdELG 300
Cdd:PRK12723 204 DKSlnIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKE------EITQSKDFDLVLVDTIGK--SPKDFM-KLA 274
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 567338376 301 KVKRVVEKKAPVSEVLLVLDATTGQNGLTQarIFA--EVVDVTGIVLTKLDGSAKGGIVVQVQRELGVPVKFIGLGE 375
Cdd:PRK12723 275 EMKELLNACGRDAEFHLAVSSTTKTSDVKE--IFHqfSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQ 349
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
194-323 |
6.15e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.61 E-value: 6.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 194 KPAVVMMVGVNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLttwgdrVGVQTIRGEEGTDPASIAFNAVDAG 273
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQL------LLIIVGGKKASGSGELRLRLALALA 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 567338376 274 IEQGVDVVLVDTAGRLHTKTGLMDELGKVKRVVEKKAPVSEVLLVLDATT 323
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
144-287 |
7.60e-08 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 53.11 E-value: 7.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 144 STELVETLRKRLsiDGIDDPAQAKEALREELVKLVdPSLDRSLNLDHeegKPAVVMMVGVNGTGKTTTVGKL-GR-VLVA 221
Cdd:TIGR03499 149 SEELARELLEKL--PEDADAEDAWRWLREALEGML-PVKPEEDPILE---QGGVIALVGPTGVGKTTTLAKLaARfALEH 222
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 567338376 222 EDKKVLF--------GaadtfraaAAEQLTTWGD--RVGVQTIRgeegtDPASIAfNAVDAgiEQGVDVVLVDTAG 287
Cdd:TIGR03499 223 GKKKVALittdtyriG--------AVEQLKTYAEilGIPVKVAR-----DPKELR-EALDR--LRDKDLILIDTAG 282
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
197-375 |
7.71e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 53.97 E-value: 7.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 197 VVMMVGVNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIrgeEGTDPASIAFNAVDAGIEQ 276
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI---VATSPAELEEAVQYMTYVN 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 277 GVDVVLVDTAGRLHTKTGLMDELGKVKRVVEKKapvsevllvLDATTGQNGLTQARIFAEV-----VDVTGIVLTKLDGS 351
Cdd:PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPD---------LTCFTFSSGMKSADVMTILpklaeIPIDGFIITKMDET 355
|
170 180
....*....|....*....|....
gi 567338376 352 AKGGIVVQVQRELGVPVKFIGLGE 375
Cdd:PRK12726 356 TRIGDLYTVMQETNLPVLYMTDGQ 379
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
146-349 |
1.01e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 53.81 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 146 ELVETLRKRLSIDGIDDPAQAKEALREELVKLVdpSLDRSLNLDHEEGKPAVVMMVGVNGTGKTTTVGKL-GRVLVAEDK 224
Cdd:PRK12724 176 EMASKLEERLSPVDQGRNHNVTERAVTYLEERV--SVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLaAKYFLHMGK 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 225 KVLFGAADTFRAAAAEQLTTWGDRVG-----VQTIRGEEGTdpasIAfnavdagiEQGVDVVLVDTAGRLHTKTGLMDEL 299
Cdd:PRK12724 254 SVSLYTTDNYRIAAIEQLKRYADTMGmpfypVKDIKKFKET----LA--------RDGSELILIDTAGYSHRNLEQLERM 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 567338376 300 GKVKRVVEKKAPVsEVLLVLDATTGQNGLTQARIFAEVVDVTGIVLTKLD 349
Cdd:PRK12724 322 QSFYSCFGEKDSV-ENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLD 370
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
172-375 |
2.13e-07 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 52.76 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 172 EELVKLVDPSLDRSLNLDHE-EGKPAVVMMVGVNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDRVG 250
Cdd:PRK11889 217 EEVIEYILEDMRSHFNTENVfEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 251 VQTI--RGEEGTDPASIAFNAvdagiEQGVDVVLVDTAGRLHTKTGLMDELGKVKRVVEKKApvseVLLVLDATTGQNGL 328
Cdd:PRK11889 297 FEVIavRDEAAMTRALTYFKE-----EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDY----ICLTLSASMKSKDM 367
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 567338376 329 TQARIFAEVVDVTGIVLTKLDGSAKGGIVVQVQRELGVPVKFIGLGE 375
Cdd:PRK11889 368 IEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
170-375 |
3.65e-07 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 51.29 E-value: 3.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 170 LREELVKLVDPSLDRSLNLDHE-EGKPAVVMMVGVNGTGKTTTVGKLGRVLVAEDKKVLFGAADTFRAAAAEQLTTWGDR 248
Cdd:PRK06731 49 ITEEVIEYILEDMSSHFNTENVfEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 249 VGVQTI--RGEEGTDPASIAFNAvdagiEQGVDVVLVDTAGRLHTKTGLMDELGKVKRVVEKkapvSEVLLVLDATTGQN 326
Cdd:PRK06731 129 IGFEVIavRDEAAMTRALTYFKE-----EARVDYILIDTAGKNYRASETVEEMIETMGQVEP----DYICLTLSASMKSK 199
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 567338376 327 GLTQARIFAEVVDVTGIVLTKLDGSAKGGIVVQVQRELGVPVKFIGLGE 375
Cdd:PRK06731 200 DMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 248
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
139-389 |
6.04e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 51.73 E-value: 6.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 139 LGVGPSTELVETLRKRLSIdGIDDPaQAKEALREELVKLVdPSLDRSlnlDHEEGKPAVVMMVGVNGTGKTTTVGKLGRV 218
Cdd:PRK14723 135 LGAGFSGQLARALLERLPV-GYDRP-AAMAWIRNELATHL-PVLRDE---DALLAQGGVLALVGPTGVGKTTTTAKLAAR 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 219 LVAED--KKVLFGAADTFRAAAAEQLTTWGDRVGV--QTIRgeegtDPASIAFNAVDAGieqGVDVVLVDTAGRLHTKTG 294
Cdd:PRK14723 209 CVAREgaDQLALLTTDSFRIGALEQLRIYGRILGVpvHAVK-----DAADLRFALAALG---DKHLVLIDTVGMSQRDRN 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 295 LMDELGKVKRVvekKAPVSEVLLVldattgqNGLTQARIFAEVV---------DVTGIVLTKLDGSAKGGIVVQVQRELG 365
Cdd:PRK14723 281 VSEQIAMLCGV---GRPVRRLLLL-------NAASHGDTLNEVVhayrhgageDVDGCIITKLDEATHLGPALDTVIRHR 350
|
250 260
....*....|....*....|....*
gi 567338376 366 VPVKFIGLGEGA-DDLAPFEADGFV 389
Cdd:PRK14723 351 LPVHYVSTGQKVpEHLELAQADELV 375
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
191-380 |
1.26e-06 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 50.37 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 191 EEGkpAVVMMVGVNGTGKTTTVGKLGRVLVAED--KKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDpasiafn 268
Cdd:PRK12727 348 ERG--GVIALVGPTGAGKTTTIAKLAQRFAAQHapRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES------- 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 269 aVDAGIEQGVD--VVLVDTAGRLHTKTGLMDELGKVkrvveKKAPVSEVLLVLDATTGQNGLTQ-ARIFAEvVDVTGIVL 345
Cdd:PRK12727 419 -LLDLLERLRDykLVLIDTAGMGQRDRALAAQLNWL-----RAARQVTSLLVLPANAHFSDLDEvVRRFAH-AKPQGVVL 491
|
170 180 190
....*....|....*....|....*....|....*.
gi 567338376 346 TKLDGSAKGGIVVQVQRELGVPVKFIGLGEGA-DDL 380
Cdd:PRK12727 492 TKLDETGRFGSALSVVVDHQMPITWVTDGQRVpDDL 527
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
131-178 |
4.86e-06 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 44.08 E-value: 4.86e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 567338376 131 ETTLITSDLGVGPSTELVETLRKRL---SIDGIDDPAQAKEALREELVKLV 178
Cdd:smart00963 27 EEALLEADVGVEVVKEIIERVKEKAkgeVLKGLTPKQEVKKILKEELVKIL 77
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
131-174 |
1.12e-04 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 40.14 E-value: 1.12e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 567338376 131 ETTLITSDLGVGPSTELVETLRKR-LSIDGIDDPAQAKEALREEL 174
Cdd:pfam02881 31 EEALLEADVGVEVVKKIIERLREKaVGEKKLKPPQEVKKILKEEL 75
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
188-375 |
2.08e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 43.17 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 188 LDHEEG---KPAVVMMVGVNGTGKTTTVGKLGRVLVAE--DKKVLFGAADTFRAAAAEQLTTWGDRVGVQTIRGEEGTDp 262
Cdd:PRK14722 127 LDSEDAlmeRGGVFALMGPTGVGKTTTTAKLAARCVMRfgASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD- 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 567338376 263 ASIAFNAVdagieQGVDVVLVDTAGRLHTKTGLMDELGKVKRVvekKAPVSEVLLvLDATTGQNGLTQ---------ARI 333
Cdd:PRK14722 206 LQLALAEL-----RNKHMVLIDTIGMSQRDRTVSDQIAMLHGA---DTPVQRLLL-LNATSHGDTLNEvvqayrsaaGQP 276
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 567338376 334 FAEVVDVTGIVLTKLDGSAKGGIVVQVQRELGVPVKFIGLGE 375
Cdd:PRK14722 277 KAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQ 318
|
|
| AdSS |
cd03108 |
adenylosuccinate synthetase; Adenylosuccinate synthetase (AdSS) catalyzes the first step in ... |
328-379 |
4.00e-03 |
|
adenylosuccinate synthetase; Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-phosphate group of GTP is transferred to the 6-oxygen atom of IMP. An aspartate then displaces this 6-phosphate group to form the product adenylosuccinate. Because of its critical role in purine biosynthesis, AdSS is a target of antibiotics, herbicides and antitumor drugs.
Pssm-ID: 349762 Cd Length: 316 Bit Score: 39.02 E-value: 4.00e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 567338376 328 LTQARIFAEVVDVTGIVLTKLDGSAKGgIVVQVQRELGVPVKFIGLGEGADD 379
Cdd:cd03108 263 LVALRYAVRINGLTELALTKLDVNAQK-YIERIEELLGVPITYISVGPDREQ 313
|
|
| |
