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Conserved domains on  [gi|575414924|gb|ETX00230|]
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MAG: hypothetical protein ETSY1_11980 [Candidatus Entotheonella factor]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6364 pfam19891
Family of unknown function (DUF6364); This family of uncharacterized proteins is found in ...
 3-77 7.06e-18

Family of unknown function (DUF6364); This family of uncharacterized proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length and they seem to belong to the toxin-antitoxin system. They are likely to contain a ribbon-helix-helix DNA-binding motif.


:

Pssm-ID: 466224  Cd Length: 78  Bit Score: 70.32  E-value: 7.06e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 575414924   3 NAILTVQLATQDIEFIEQYAKHRGATVSELIKDYIQSLQVSQESSLHPDIQKITGIVPL--DIDAKAAYYQRLLKKH 77
Cdd:pfam19891  2 KTKLTLRLDKDVIEKAKAYAKQNGTSLSELVENYLKSLTSKLEIEISPLVKSLSGIIKLpdDFDYKKEYRDYLEEKY 78
 
Name Accession Description Interval E-value
DUF6364 pfam19891
Family of unknown function (DUF6364); This family of uncharacterized proteins is found in ...
 3-77 7.06e-18

Family of unknown function (DUF6364); This family of uncharacterized proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length and they seem to belong to the toxin-antitoxin system. They are likely to contain a ribbon-helix-helix DNA-binding motif.


Pssm-ID: 466224  Cd Length: 78  Bit Score: 70.32  E-value: 7.06e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 575414924   3 NAILTVQLATQDIEFIEQYAKHRGATVSELIKDYIQSLQVSQESSLHPDIQKITGIVPL--DIDAKAAYYQRLLKKH 77
Cdd:pfam19891  2 KTKLTLRLDKDVIEKAKAYAKQNGTSLSELVENYLKSLTSKLEIEISPLVKSLSGIIKLpdDFDYKKEYRDYLEEKY 78
 
Name Accession Description Interval E-value
DUF6364 pfam19891
Family of unknown function (DUF6364); This family of uncharacterized proteins is found in ...
 3-77 7.06e-18

Family of unknown function (DUF6364); This family of uncharacterized proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length and they seem to belong to the toxin-antitoxin system. They are likely to contain a ribbon-helix-helix DNA-binding motif.


Pssm-ID: 466224  Cd Length: 78  Bit Score: 70.32  E-value: 7.06e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 575414924   3 NAILTVQLATQDIEFIEQYAKHRGATVSELIKDYIQSLQVSQESSLHPDIQKITGIVPL--DIDAKAAYYQRLLKKH 77
Cdd:pfam19891  2 KTKLTLRLDKDVIEKAKAYAKQNGTSLSELVENYLKSLTSKLEIEISPLVKSLSGIIKLpdDFDYKKEYRDYLEEKY 78
DUF6290 pfam19807
Family of unknown function (DUF6290); This family of proteins is functionally uncharacterized, ...
 4-35 7.88e-04

Family of unknown function (DUF6290); This family of proteins is functionally uncharacterized, they are predominantly found in bacteria but also in viruses. Proteins in this family are approximately 80 amino acids in length and presumably contain a ribbon-helix-helix DNA-binding motif.


Pssm-ID: 437639  Cd Length: 72  Bit Score: 34.46  E-value: 7.88e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 575414924   4 AILTVQLATQDIEFIEQYAKHRGATVSELIKD 35
Cdd:pfam19807  2 STISVRLNEEEEELIKKYAKLKGISLSELIRQ 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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