|
Name |
Accession |
Description |
Interval |
E-value |
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
1-336 |
0e+00 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 506.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:PRK09478 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 81 VVAATMLQAVDNANKVFPEMATMPIPLVILLVCAIGAVIGLINGIVIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP 160
Cdd:PRK09478 81 VVAATLLQSMDNANKVFPELATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVGASP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 161 ISGFDSHFSQFAQGFVALGSFRLSYITFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGV 240
Cdd:PRK09478 161 ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 241 FYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAI 320
Cdd:PRK09478 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAI 320
|
330
....*....|....*.
gi 578215905 321 IIFAVALDSLKYARKK 336
Cdd:PRK09478 321 IIFAVALDSLKYARKK 336
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
1-336 |
1.82e-151 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 428.93 E-value: 1.82e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:COG4211 1 EKKIKKKKIKNFLLNNAIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 81 VVAATMLQAVDNANKVFPEMATMPIPLVILLVCAIGAVIGLINGIVIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP 160
Cdd:COG4211 81 VISASLLQSGDYAGKFFPNLPELPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYTDRPGAQP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 161 ISGFDSHFSQFAQGFVALGSFRLSYITFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGV 240
Cdd:COG4211 161 IGGLDESFTNFAQGSINIGGFGIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 241 FYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAI 320
Cdd:COG4211 241 LYGFAGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLI 320
|
330
....*....|....*.
gi 578215905 321 IIFAVALDSLKYARKK 336
Cdd:COG4211 321 IIAAVALDIRKYLKKK 336
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
49-328 |
1.51e-60 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 194.55 E-value: 1.51e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 49 SSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATMLQAvdnankvfpemATMPIPLVILLVCAIGAVIGLINGIVIA 128
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVN-----------AGLPIPLAILAALAVGALIGLLNGLLVA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 129 YLNVTPFITTLGTMIIVYGINSLYydfVGASPISGFDSHFSQFAQGFVALGsfrLSYITFYALIAIFFVWILWNKTRFGK 208
Cdd:cd06579 70 YLRIPPFIVTLGTMFILRGLALLI---TGGRPISGLPPLFSFFLGGGLILG---IPVPVLIALAVALVAWFLLRRTRFGR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 209 NIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFG 288
Cdd:cd06579 144 YLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLG 223
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 578215905 289 VVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALD 328
Cdd:cd06579 224 TLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
48-328 |
1.95e-26 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 107.54 E-value: 1.95e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 48 QSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATMLQAVDnankvfpematMPIPLVILLVCAIGAVIGLINGIVI 127
Cdd:NF040906 38 QNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWG-----------MPWWLAVLLCLLVGALIGAWQGFWV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 128 AYLNVTPFITTLGTMIIVYGinsLYYDFVGASPISGFDSHFSQFAQGFV--ALGSFRLSYITFY--ALIAIFFVWILW-- 201
Cdd:NF040906 107 AYVGIPAFIVTLAGMLVFRG---LTLVVLGGQSIGPFPDGFQKISSGFLpdLFGGTGLHLLTLLlgVLAAAALVWSQLrg 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 202 -----------------------------------------------------------NKTRFGKNIFAIGGNPEAARV 222
Cdd:NF040906 184 rrrrikyglevepmalfiaklvliaaailfftyllasyrglpnvliilgvlilvysfvtNRTVIGRHIYAVGGNEKAAKL 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 223 SGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYG 302
Cdd:NF040906 264 SGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVLNNG 343
|
330 340
....*....|....*....|....*.
gi 578215905 303 LTYIGVNPYWQYIIKGAIIIFAVALD 328
Cdd:NF040906 344 MSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
47-325 |
2.03e-20 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 89.24 E-value: 2.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 47 TQSSVRIIIALGVAGLI-VTQGTDLSAGRQVGLAAVVAATMLQavdnankvfpeMATMPIPLVILLVCAIGAVIGLINGI 125
Cdd:pfam02653 7 TLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLN-----------LLGPGLWLALPVGILVGAAVGLLIGI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 126 VIAYLNVTPFITTLGTMIIVYGINSLYYDfvGASPISGFDSHFSQFAQGFVALGSFRLSYITFYALIAIFFVWILWNKTR 205
Cdd:pfam02653 76 LTLRLKINEVIITLLLNLAALGLALFLVT--GILGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 206 FGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSAT-NNLGFMYELDAIAACvvggvSFSGGVG 284
Cdd:pfam02653 154 FGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAV-----VLGGAGS 228
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 578215905 285 TVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAV 325
Cdd:pfam02653 229 PIGVVIGSLIIGLVQSLGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
1-336 |
0e+00 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 506.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:PRK09478 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 81 VVAATMLQAVDNANKVFPEMATMPIPLVILLVCAIGAVIGLINGIVIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP 160
Cdd:PRK09478 81 VVAATLLQSMDNANKVFPELATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVGASP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 161 ISGFDSHFSQFAQGFVALGSFRLSYITFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGV 240
Cdd:PRK09478 161 ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 241 FYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAI 320
Cdd:PRK09478 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAI 320
|
330
....*....|....*.
gi 578215905 321 IIFAVALDSLKYARKK 336
Cdd:PRK09478 321 IIFAVALDSLKYARKK 336
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
1-336 |
1.82e-151 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 428.93 E-value: 1.82e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:COG4211 1 EKKIKKKKIKNFLLNNAIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 81 VVAATMLQAVDNANKVFPEMATMPIPLVILLVCAIGAVIGLINGIVIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP 160
Cdd:COG4211 81 VISASLLQSGDYAGKFFPNLPELPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYTDRPGAQP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 161 ISGFDSHFSQFAQGFVALGSFRLSYITFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGV 240
Cdd:COG4211 161 IGGLDESFTNFAQGSINIGGFGIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 241 FYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAI 320
Cdd:COG4211 241 LYGFAGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLI 320
|
330
....*....|....*.
gi 578215905 321 IIFAVALDSLKYARKK 336
Cdd:COG4211 321 IIAAVALDIRKYLKKK 336
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
2-336 |
4.23e-68 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 216.13 E-value: 4.23e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 2 SALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAV 81
Cdd:COG1172 5 TTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 82 VAATMLQAVDnankvfpematMPIPLVILLVCAIGAVIGLINGIVIAYLNVTPFITTLGTMIIVYGINSLYydfVGASPI 161
Cdd:COG1172 85 VAALLLVALG-----------LPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLL---TGGRPI 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 162 SGFDSHFSQFAQGFValgsFRLSYITFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVF 241
Cdd:COG1172 151 SGLPDAFRALGQGSL----LGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLL 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 242 YAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAII 321
Cdd:COG1172 227 AGLAGILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAII 306
|
330
....*....|....*
gi 578215905 322 IFAVALDSLKYARKK 336
Cdd:COG1172 307 LLAVLLDRLRRRRRA 321
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
49-328 |
1.51e-60 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 194.55 E-value: 1.51e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 49 SSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATMLQAvdnankvfpemATMPIPLVILLVCAIGAVIGLINGIVIA 128
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVN-----------AGLPIPLAILAALAVGALIGLLNGLLVA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 129 YLNVTPFITTLGTMIIVYGINSLYydfVGASPISGFDSHFSQFAQGFVALGsfrLSYITFYALIAIFFVWILWNKTRFGK 208
Cdd:cd06579 70 YLRIPPFIVTLGTMFILRGLALLI---TGGRPISGLPPLFSFFLGGGLILG---IPVPVLIALAVALVAWFLLRRTRFGR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 209 NIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFG 288
Cdd:cd06579 144 YLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLG 223
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 578215905 289 VVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALD 328
Cdd:cd06579 224 TLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
17-331 |
3.28e-46 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 159.71 E-value: 3.28e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 17 GIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATMlqavdnanKV 96
Cdd:COG4158 31 GMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLV--------SL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 97 FPEMATMPIPLVILlvcaIGAVIGLINGIVIAYLNVTPFITTLGTMIIVYGINSLyydFVGASPISGFDSHFSqfaqgfv 176
Cdd:COG4158 103 LPGLGLLGIPAALL----VGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARL---LANGTTVFNPDLPFA------- 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 177 ALGSFRLSYITFYALIAIFFV---WILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLEAGRI 253
Cdd:COG4158 169 WIGNGYLLGIPWLVVIALAVVlasWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARL 248
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578215905 254 GSAT-NNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLK 331
Cdd:COG4158 249 YAANgLQLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYR 327
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
2-328 |
1.38e-41 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 147.17 E-value: 1.38e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 2 SALNKKSFLT--YLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLA 79
Cdd:PRK09512 3 QTVSGRRYFTkaWLIEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 80 AVVAATMLQAvdnankvfpemaTMPIPLVILLVCAIGAVIGLINGIVIAYLNVTPFITTLGTMIIVYGINSLYYDfvgAS 159
Cdd:PRK09512 83 GAVAASIVGI------------EVNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTD---GS 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 160 PISgfdSHFSQFAQGFVALGSFRLSYI-TFYALIAIFFV--WILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYA 236
Cdd:PRK09512 148 PIN---TGFTDNADLFGWFGIGRPLGIpTPVWIMAIVFLaaWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYA 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 237 LSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYII 316
Cdd:PRK09512 225 LCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIV 304
|
330
....*....|..
gi 578215905 317 KGAIIIFAVALD 328
Cdd:PRK09512 305 KAVVILLAVLVD 316
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
14-330 |
5.84e-34 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 126.81 E-value: 5.84e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 14 KEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATMLQAvdna 93
Cdd:PRK09699 11 KYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLA---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 94 nkvfpemATMPIPLVILLVCAIGAVIGLINGIVIAYLNVTPFITTLGTMIIVYGINSLYYDfvgASPISGFDSHFSQFAQ 173
Cdd:PRK09699 87 -------GVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISD---ANSVYGFSFDFVNFFA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 174 GFValgsFRLSYITFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLEAGRI 253
Cdd:PRK09699 157 ASV----IGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARL 232
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578215905 254 GSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSL 330
Cdd:PRK09699 233 GAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRL 309
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
2-336 |
3.53e-32 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 122.48 E-value: 3.53e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 2 SALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAV 81
Cdd:PRK11285 16 PPKSRFSLWRIWDQYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 82 VAATMLQAVDNankvfpematmpIPLVILLVCAIGAVIGLINGIVIAYLNVTPFITTLGTMIIVYGINSLYYD--FVGAS 159
Cdd:PRK11285 96 VTAVVINATES------------LWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDgkAVGIS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 160 PISGFDSHFSQFaqgfvalgsFRLSYITFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSG 239
Cdd:PRK11285 164 DERFFALGYANF---------FGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 240 VFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGA 319
Cdd:PRK11285 235 LVSALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGL 314
|
330
....*....|....*..
gi 578215905 320 IIIFAVALDSLKYARKK 336
Cdd:PRK11285 315 ILLAAVLFDRYKQRAKR 331
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
48-328 |
1.95e-26 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 107.54 E-value: 1.95e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 48 QSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATMLQAVDnankvfpematMPIPLVILLVCAIGAVIGLINGIVI 127
Cdd:NF040906 38 QNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWG-----------MPWWLAVLLCLLVGALIGAWQGFWV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 128 AYLNVTPFITTLGTMIIVYGinsLYYDFVGASPISGFDSHFSQFAQGFV--ALGSFRLSYITFY--ALIAIFFVWILW-- 201
Cdd:NF040906 107 AYVGIPAFIVTLAGMLVFRG---LTLVVLGGQSIGPFPDGFQKISSGFLpdLFGGTGLHLLTLLlgVLAAAALVWSQLrg 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 202 -----------------------------------------------------------NKTRFGKNIFAIGGNPEAARV 222
Cdd:NF040906 184 rrrrikyglevepmalfiaklvliaaailfftyllasyrglpnvliilgvlilvysfvtNRTVIGRHIYAVGGNEKAAKL 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 223 SGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYG 302
Cdd:NF040906 264 SGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVLNNG 343
|
330 340
....*....|....*....|....*.
gi 578215905 303 LTYIGVNPYWQYIIKGAIIIFAVALD 328
Cdd:NF040906 344 MSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
54-334 |
2.07e-23 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 98.75 E-value: 2.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 54 IIALGVAGLIVTQGTDLSAGRQVGLAAVVAATMLQAvdnankvfpemaTMPIPLVILLVCAIGAVIGLINGIVIAYLNVT 133
Cdd:PRK15038 47 IVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQS------------GVPMPLAILLTLLLGALCGLINAGLIIYTGVN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 134 PFITTLGTMIIVYGINSLYYDFVGASP---ISGFDSHFSQFAQgfvaLGSFRLSYITFYALIAIFFVWILWNKTRFGKNI 210
Cdd:PRK15038 115 PLVITLGTLYLFGGSALLLSGMAGATGyegIGGFPMAFTDFAN----LDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNV 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 211 FAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVV 290
Cdd:PRK15038 191 FLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTA 270
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 578215905 291 TGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLKYAR 334
Cdd:PRK15038 271 LAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHR 314
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
47-325 |
2.03e-20 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 89.24 E-value: 2.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 47 TQSSVRIIIALGVAGLI-VTQGTDLSAGRQVGLAAVVAATMLQavdnankvfpeMATMPIPLVILLVCAIGAVIGLINGI 125
Cdd:pfam02653 7 TLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLN-----------LLGPGLWLALPVGILVGAAVGLLIGI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 126 VIAYLNVTPFITTLGTMIIVYGINSLYYDfvGASPISGFDSHFSQFAQGFVALGSFRLSYITFYALIAIFFVWILWNKTR 205
Cdd:pfam02653 76 LTLRLKINEVIITLLLNLAALGLALFLVT--GILGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 206 FGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSAT-NNLGFMYELDAIAACvvggvSFSGGVG 284
Cdd:pfam02653 154 FGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAV-----VLGGAGS 228
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 578215905 285 TVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAV 325
Cdd:pfam02653 229 PIGVVIGSLIIGLVQSLGLGALGSPPELSLLVLGALLILVL 269
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
14-328 |
2.31e-19 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 87.48 E-value: 2.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 14 KEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATMLQAvdna 93
Cdd:PRK15432 9 RELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNA---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 94 nkvfpemaTMPIPLVILLVCAIGAVIGLINGIVIAYLNVTPFITTLGTMIIVYGINSLYydfVGASPISGFDSHFSQFAQ 173
Cdd:PRK15432 85 --------GYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLW---TGGKWIEGLPAELKQLSA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 174 GFValgsFRLSYITFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLEAGRI 253
Cdd:PRK15432 154 PIL----LGISPIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQI 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578215905 254 GSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALD 328
Cdd:PRK15432 230 GFIPNQTGTGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
20-271 |
1.04e-17 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 82.31 E-value: 1.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 20 VVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATMLqavdnankvfpE 99
Cdd:PRK11618 13 GVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLI-----------G 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 100 MATMPIPLVILLVCAIGAVIGLINGIVIAYLNVTPFITTLGTMIIVYGINSLyydfVGASPISGFDSHFSQFAQGFVAL- 178
Cdd:PRK11618 82 DYGWSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFL----VSEESIPINHPFYDTLSSLAWKLp 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 179 GSFRLSYITFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSATN 258
Cdd:PRK11618 158 GGGRLSAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYA 237
|
250
....*....|...
gi 578215905 259 NLGFMYELDAIAA 271
Cdd:PRK11618 238 LAAVGVELDAIAA 250
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
105-270 |
5.85e-13 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 68.61 E-value: 5.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 105 IPLVILLVCAIGAVIGLINGIVIAYLNVTPFITTL-----GTMIIVYGINSLYYDFVGASPISgfdSHFSQFAQGFVALG 179
Cdd:COG4603 116 LPLALLAGALAGALWAAIPGLLKARFGVNEVITTLmlnyiALYLVNYLVRGPLRDPGSGFPQT---PPIPESARLPRLLP 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 180 SFRLSYITFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLE-AGRIGSATN 258
Cdd:COG4603 193 GTRLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEvLGVQGRLTP 272
|
170
....*....|..
gi 578215905 259 NLGFMYELDAIA 270
Cdd:COG4603 273 GFSPGYGFTGIA 284
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
49-271 |
8.64e-13 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 67.30 E-value: 8.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 49 SSVRIIIALGVAGLIVTQG-TDLSAGRQVGLAAVVAATMLqavdnankvfpeMATMPIPLVILLVCAIGAVIGLINGIVI 127
Cdd:cd06574 1 GLIYAILALGVYIVFRILGfPDLTVDGSFPLGAAVAAILI------------VAGYNPWLALIAAILAGAAAGLVTGFLH 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 128 AYLNVTPFITTLGTMIIVYGINSLYYdfvGASPISGFDSHFSQFAQGFVALGSFRLSYITFYALIAIF-FVWILWNKTRF 206
Cdd:cd06574 69 TRLKINGLLAGILIMIGLYSINLRIM---GGPNIPLGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVlFLVIWFLRTKL 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578215905 207 GKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAA 271
Cdd:cd06574 146 GLAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAA 210
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
105-271 |
1.13e-10 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 60.53 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 105 IPLVILLVCAIGAVIGLINGIVIAYLNVTPFITTLGTMIIVYGInslyydfvgaspisgfdshfsqfaqgfvalgsfrLS 184
Cdd:cd06580 50 LPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIALGL----------------------------------TS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 185 YITFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLE-AGRIGSATNNLGFM 263
Cdd:cd06580 96 YLLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLvLGVQGRFTEGMSAG 175
|
....*...
gi 578215905 264 YELDAIAA 271
Cdd:cd06580 176 YGFIAIAV 183
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
103-271 |
1.32e-09 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 58.15 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 103 MPIPLVILLVCAIGAVIG-LINGIVIAYL----NVTPFITTLGTMIIVYGINSLYYdfvGASPISgfdshFSQFAQGFVA 177
Cdd:COG0559 59 LPLWLALLLAVLVAALLGvLLERLVIRPLrgapPLALLLATIGLSLVLQGLVLLIF---GADPRS-----FPALLSGSVE 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 178 LGSFRLSYITFY----ALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLeAGRI 253
Cdd:COG0559 131 LGGVSIPAYRLFiivvALVLLAALWLFLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVL-LAPI 209
|
170
....*....|....*...
gi 578215905 254 GSATNNLGFMYELDAIAA 271
Cdd:COG0559 210 YSVSPTMGFLLGLKAFAA 227
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
96-271 |
9.60e-09 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 55.51 E-value: 9.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 96 VFPEMATMPIPLVILLVCAIGAVIG-LINGIVIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASPISgfdsHFSQFAQG 174
Cdd:cd06582 42 TLLVALGLPFWLALLLALLVAALLGvLLERLVLRPLRGAPLLTLLITFGGLLILLQGLLLIFGGDPRV----PPPPLLSG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 175 FVALGSFRLSYITFY----ALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLeA 250
Cdd:cd06582 118 SVELGGVTIPPYRLFiiavALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVL-L 196
|
170 180
....*....|....*....|.
gi 578215905 251 GRIGSATNNLGFMYELDAIAA 271
Cdd:cd06582 197 APITGVSPTMGLLLLLKAFAA 217
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
103-257 |
2.22e-08 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 54.37 E-value: 2.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 103 MPIPLVILLVCAIGAVIGLINGIVIAYLNVTPF-ITTLGTMIIVYGINSLYYDFVGASpiSGFDSHFSQFAQGFVALGSF 181
Cdd:cd06581 45 LPFWLALLAAGLVAALVGLLLGLPALRLRGVYFaIATLAFAEIVRLLALNWSSLTGGS--NGLSGIPPPLLGGLLLSSPL 122
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578215905 182 RLSYITFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSAT 257
Cdd:cd06581 123 AFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVS 198
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
103-272 |
7.99e-08 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 52.78 E-value: 7.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 103 MPIPLVILLVCAIGAVIGLINGIVIAYLNVTPF-ITTLGTMIIVYGINSLYYDFV-GASPISGFDSHFsqfAQGFVALGS 180
Cdd:COG4177 55 LPFWLALLLAGLVAALLGLLIGLPALRLRGDYLaIATLAFAEIVRLLALNLESLTgGADGLSGIPRPT---LFGLDLGSP 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 181 FRLSYITFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSAT-NN 259
Cdd:COG4177 132 LAFYYLVLALLVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSpES 211
|
170
....*....|...
gi 578215905 260 LGFMYELDAIAAC 272
Cdd:COG4177 212 FSFLLSIEILLMV 224
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
114-246 |
4.75e-07 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 50.45 E-value: 4.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 114 AIGAVIGLINGIVIAYLNVTPFITTLGTMIIVYGINS-LYYDFVGASPISGFDSHFSQFAQGFVA----LGS--FRLSYI 186
Cdd:COG1079 71 LAGALLALLHAFLTITLRANQIVSGLALNLLALGLTAfLGRLLFGQGGQTPSIPGLPPIPIPGLSdipvLGPllFGQSPL 150
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 578215905 187 TFYALIAIFFVWILWNKTRFGKNIFAIGGNPEAARVSGVNVALNLLMIYALSGVFYAFGG 246
Cdd:COG1079 151 VYLALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGG 210
|
|
| |
