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Conserved domains on  [gi|579933986|gb|EUZ70616|]
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30S ribosomal protein S4 [Staphylococcus sp. M0480]

Protein Classification

30S ribosomal protein S4( domain architecture ID 11480735)

30S ribosomal protein S4 binds directly to 16S rRNA and plays an important role in translational accuracy

Gene Ontology:  GO:0003735|GO:0006412|GO:0019843

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-200 1.70e-128

30S ribosomal protein S4; Validated


:

Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 359.80  E-value: 1.70e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986   1 MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRK-KLSEYGLQLREKQKLRYLYGMTERQFRNTFDIAGKQH 79
Cdd:PRK05327   1 MARYTGPKCKLSRRLGVDLFKSGKRCLKRKYPPGQHGQRRRKpKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARRK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986  80 GVHGENFMILLASRLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISVREKSQNLDIIKESVEINN 159
Cdd:PRK05327  81 GNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALELAE 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 579933986 160 --FVPEYLDFDADSLKGTFVRLPERSELPAEINEQLIVEYYSR 200
Cdd:PRK05327 161 rrGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
 
Name Accession Description Interval E-value
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-200 1.70e-128

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 359.80  E-value: 1.70e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986   1 MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRK-KLSEYGLQLREKQKLRYLYGMTERQFRNTFDIAGKQH 79
Cdd:PRK05327   1 MARYTGPKCKLSRRLGVDLFKSGKRCLKRKYPPGQHGQRRRKpKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARRK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986  80 GVHGENFMILLASRLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISVREKSQNLDIIKESVEINN 159
Cdd:PRK05327  81 GNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALELAE 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 579933986 160 --FVPEYLDFDADSLKGTFVRLPERSELPAEINEQLIVEYYSR 200
Cdd:PRK05327 161 rrGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-200 1.82e-123

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 347.06  E-value: 1.82e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986   1 MARFRGSNWKKSRRLGISLSGTGKE---LEKRPYAPGQHGpNQRKKLSEYGLQLREKQKLRYLYGMTERQFRNTFDIAGK 77
Cdd:COG0522    1 MARYTGPKCKLCRREGVKLFLKGERkcaLERRPYPPGQHG-QRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFEEAAR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986  78 QHGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISVREKSQNLDIIKESVEI 157
Cdd:COG0522   80 RKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEALES 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 579933986 158 N--NFVPEYLDFDADSLKGTFVRLPERSELPAEINEQLIVEYYSR 200
Cdd:COG0522  160 AeqRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-200 4.08e-102

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 293.06  E-value: 4.08e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986    3 RFRGSNWKKSRRLGISLSGTGKELE-KRPYAPGQHGpNQRKKLSEYGLQLREKQKLRYLYGMTERQFRNTFDIAGKQHGV 81
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKSRKLLlKRKYPPGQHG-QRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKGN 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986   82 HGENFMILLASRLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISVREKSQNLDIIKESVEIN--N 159
Cdd:TIGR01017  80 TGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNgqR 159

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 579933986  160 FVPEYLDFDADSLKGTFVRLPERSELPAEINEQLIVEYYSR 200
Cdd:TIGR01017 160 NIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-90 1.13e-28

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 102.63  E-value: 1.13e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986    3 RFRGSNWKKSRRLGISLSGTGKE-------LEKRPY--APGQHGpnQRKKLSEYGLQLREKQKLRYLYGMTERQFRNTFD 73
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRChrelkvaQNRREYpkYPGQHG--KIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLYD 78

                          90
                  ....*....|....*..
gi 579933986   74 IAGKQHGVHGENFMILL 90
Cdd:pfam00163  79 MGLKLKGVTGENLLQLL 95
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 93-153 3.92e-20

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 79.99  E-value: 3.92e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 579933986  93 RLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISVREKSQNLDIIKE 153
Cdd:cd00165    2 RLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYE 62
S4 smart00363
S4 RNA-binding domain;
92-145 8.13e-16

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 68.39  E-value: 8.13e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 579933986    92 SRLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISVREKS 145
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKE 54
 
Name Accession Description Interval E-value
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-200 1.70e-128

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 359.80  E-value: 1.70e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986   1 MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRK-KLSEYGLQLREKQKLRYLYGMTERQFRNTFDIAGKQH 79
Cdd:PRK05327   1 MARYTGPKCKLSRRLGVDLFKSGKRCLKRKYPPGQHGQRRRKpKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARRK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986  80 GVHGENFMILLASRLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISVREKSQNLDIIKESVEINN 159
Cdd:PRK05327  81 GNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALELAE 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 579933986 160 --FVPEYLDFDADSLKGTFVRLPERSELPAEINEQLIVEYYSR 200
Cdd:PRK05327 161 rrGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-200 1.82e-123

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 347.06  E-value: 1.82e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986   1 MARFRGSNWKKSRRLGISLSGTGKE---LEKRPYAPGQHGpNQRKKLSEYGLQLREKQKLRYLYGMTERQFRNTFDIAGK 77
Cdd:COG0522    1 MARYTGPKCKLCRREGVKLFLKGERkcaLERRPYPPGQHG-QRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFEEAAR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986  78 QHGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISVREKSQNLDIIKESVEI 157
Cdd:COG0522   80 RKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEALES 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 579933986 158 N--NFVPEYLDFDADSLKGTFVRLPERSELPAEINEQLIVEYYSR 200
Cdd:COG0522  160 AeqRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-200 4.08e-102

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 293.06  E-value: 4.08e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986    3 RFRGSNWKKSRRLGISLSGTGKELE-KRPYAPGQHGpNQRKKLSEYGLQLREKQKLRYLYGMTERQFRNTFDIAGKQHGV 81
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKSRKLLlKRKYPPGQHG-QRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKGN 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986   82 HGENFMILLASRLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISVREKSQNLDIIKESVEIN--N 159
Cdd:TIGR01017  80 TGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNgqR 159

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 579933986  160 FVPEYLDFDADSLKGTFVRLPERSELPAEINEQLIVEYYSR 200
Cdd:TIGR01017 160 NIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-200 4.30e-62

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 191.58  E-value: 4.30e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986   1 MARFRGSNWKKSRRLGIsLSG-TGKelekRPYaPGQHGPNQR--KKLSEYGLQLREKQKLRYLYGMTERQFRNTFDIAGK 77
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGA-LPGlTSK----TPR-PGSDLRNQSrsGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARK 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986  78 QHGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISVREKSQNLDIIKESVEI 157
Cdd:CHL00113  75 AKGSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLES 154

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 579933986 158 --NNFVPEYLDFDADSLKGTFVRLPERSELPAEINEQLIVEYYSR 200
Cdd:CHL00113 155 spREELPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSR 199
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-90 1.13e-28

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 102.63  E-value: 1.13e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986    3 RFRGSNWKKSRRLGISLSGTGKE-------LEKRPY--APGQHGpnQRKKLSEYGLQLREKQKLRYLYGMTERQFRNTFD 73
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRChrelkvaQNRREYpkYPGQHG--KIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLYD 78

                          90
                  ....*....|....*..
gi 579933986   74 IAGKQHGVHGENFMILL 90
Cdd:pfam00163  79 MGLKLKGVTGENLLQLL 95
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 93-153 3.92e-20

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 79.99  E-value: 3.92e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 579933986  93 RLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISVREKSQNLDIIKE 153
Cdd:cd00165    2 RLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYE 62
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 93-139 1.61e-16

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 69.83  E-value: 1.61e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 579933986   93 RLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVI 139
Cdd:pfam01479   2 RLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
S4 smart00363
S4 RNA-binding domain;
92-145 8.13e-16

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 68.39  E-value: 8.13e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 579933986    92 SRLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISVREKS 145
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKE 54
rps4p PRK04051
30S ribosomal protein S4P; Validated
 89-132 9.78e-15

30S ribosomal protein S4P; Validated


Pssm-ID: 179730 [Multi-domain]  Cd Length: 177  Bit Score: 68.74  E-value: 9.78e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 579933986  89 LLASRLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYT 132
Cdd:PRK04051 100 ILERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSYL 143
uS4_arch TIGR01018
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ...
 90-134 2.22e-12

ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273397 [Multi-domain]  Cd Length: 162  Bit Score: 62.06  E-value: 2.22e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 579933986   90 LASRLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLK 134
Cdd:TIGR01018 102 LERRLQTQVYKKGLARTIHQARQLIVHGHIAVNGRVVTSPSYIVR 146
PTZ00155 PTZ00155
40S ribosomal protein S9; Provisional
 42-134 7.55e-07

40S ribosomal protein S9; Provisional


Pssm-ID: 185484 [Multi-domain]  Cd Length: 181  Bit Score: 47.38  E-value: 7.55e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986  42 KKLSEYGLQLREKQKLRYLYGMTERQFrntfdiagkqhgvhgenfmilLASRLDAVVYSLGLARTRRQARQLVGHGHIEV 121
Cdd:PTZ00155  78 RRMHRLGLLDEDERKLDYVLGLTVEKL---------------------LERRLQTKVFKLGLAKSIHHARVLIRQRHIRV 136

                         90
                 ....*....|...
gi 579933986 122 DGKRVDIPSYTLK 134
Cdd:PTZ00155 137 GKQIVDIPSFLVR 149
HslR COG1188
Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain [Translation, ribosomal ...
 93-142 6.95e-06

Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440801  Cd Length: 120  Bit Score: 43.67  E-value: 6.95e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 579933986  93 RLDAVVYSLGLARTRRQARQLVGHGHIEVDGKRVDiPSYTLKPGQVISVR 142
Cdd:COG1188    6 RLDKWLWAARFFKTRSLAAEACDGGRVRVNGQRAK-PSREVKVGDVLTIR 54
RsuA COG1187
Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605 [Translation, ...
 93-141 1.20e-05

Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605 [Translation, ribosomal structure and biogenesis]; Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605 is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440800 [Multi-domain]  Cd Length: 226  Bit Score: 44.25  E-value: 1.20e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 579933986  93 RLDAVVYSLGLArTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISV 141
Cdd:COG1187    4 RLQKFLANAGVG-SRREAEELIEAGRVTVNGKVVTELGTKVDPGDEVTV 51
PLN00189 PLN00189
40S ribosomal protein S9; Provisional
 42-134 3.62e-05

40S ribosomal protein S9; Provisional


Pssm-ID: 177783 [Multi-domain]  Cd Length: 194  Bit Score: 42.81  E-value: 3.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579933986  42 KKLSEYGLQLREKQKLRYLYGMTERQFrntfdiagkqhgvhgenfmilLASRLDAVVYSLGLARTRRQARQLVGHGHIEV 121
Cdd:PLN00189  80 RRMNRYGLLDESQNKLDYVLALTVENF---------------------LERRLQTLVFKSGMAKSIHHARVLIRQRHIRV 138

                         90
                 ....*....|...
gi 579933986 122 DGKRVDIPSYTLK 134
Cdd:PLN00189 139 GKQIVNVPSFMVR 151
PLN00051 PLN00051
RNA-binding S4 domain-containing protein; Provisional
 93-144 2.99e-03

RNA-binding S4 domain-containing protein; Provisional


Pssm-ID: 177682 [Multi-domain]  Cd Length: 267  Bit Score: 37.43  E-value: 2.99e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 579933986  93 RLDAVVySLGLARTRRQARQLVGHGHIEVDGKRVDIPSYTLKPGQVISVREK 144
Cdd:PLN00051 193 RLDALA-SAGFRMSRSKLVDLISSGDVRVNWREVTKNGTTLKTGDVVSVSGK 243
ZntA COG2217
Cation-transporting P-type ATPase [Inorganic ion transport and metabolism];
86-142 5.18e-03

Cation-transporting P-type ATPase [Inorganic ion transport and metabolism];


Pssm-ID: 441819 [Multi-domain]  Cd Length: 717  Bit Score: 37.04  E-value: 5.18e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 579933986  86 FMILLASRLDAVVYSlglaRTRRQARQLVG----HGHIEVDGKRVDIPSYTLKPGQVISVR 142
Cdd:COG2217  184 FLLLLGRYLEARAKG----RARAAIRALLSlqpkTARVLRDGEEVEVPVEELRVGDRVLVR 240
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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