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Conserved domains on  [gi|582337147|gb|EVW32828|]
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ribosomal RNA small subunit methyltransferase H [Staphylococcus aureus T47181]

Protein Classification

16S rRNA (cytosine(1402)-N(4))-methyltransferase( domain architecture ID 10000958)

16S rRNA (cytosine(1402)-N(4))-methyltransferase specifically methylates the N4 position of cytidine 1402 (C1402) of 16S rRNA

Gene Ontology:  GO:0070475

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
RmsH COG0275
16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 1-308 0e+00

16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; 16S rRNA C1402 N4-methylase RsmH is part of the Pathway/BioSystem: 16S rRNA modification


:

Pssm-ID: 440044  Cd Length: 312  Bit Score: 529.25  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147   1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKDHLHKVTFVHSNFR 80
Cdd:COG0275    4 EFYHIPVLLEEVLEALAPKPGGVYVDGTLGGGGHSRAILERLGPGGRLIGIDRDPDAIAAAKERLAEFGDRFTLVHGNFS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147  81 ELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFS 160
Cdd:COG0275   84 ELDEVLAELGIEKVDGILLDLGVSSPQLDDAERGFSFRRDGPLDMRMDPSQGLTAADVLNTYSEEELARILREYGEERFA 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147 161 KQIARRIEAHREQQPITTTLELVDIIKEGIPAKArRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240
Cdd:COG0275  164 RRIARAIVEARKEKPITTTGELAEIIKRAVPAKA-RKGIHPATRTFQALRIEVNDELEELEEALEAALDLLKPGGRLAVI 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 582337147 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVAE 308
Cdd:COG0275  243 SFHSLEDRIVKRFFREGSKGCECPPDLPVCECGHKPPLKLLTKKPIVPSEEEIARNPRARSAKLRVAE 310
 
Name Accession Description Interval E-value
RmsH COG0275
16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 1-308 0e+00

16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; 16S rRNA C1402 N4-methylase RsmH is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440044  Cd Length: 312  Bit Score: 529.25  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147   1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKDHLHKVTFVHSNFR 80
Cdd:COG0275    4 EFYHIPVLLEEVLEALAPKPGGVYVDGTLGGGGHSRAILERLGPGGRLIGIDRDPDAIAAAKERLAEFGDRFTLVHGNFS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147  81 ELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFS 160
Cdd:COG0275   84 ELDEVLAELGIEKVDGILLDLGVSSPQLDDAERGFSFRRDGPLDMRMDPSQGLTAADVLNTYSEEELARILREYGEERFA 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147 161 KQIARRIEAHREQQPITTTLELVDIIKEGIPAKArRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240
Cdd:COG0275  164 RRIARAIVEARKEKPITTTGELAEIIKRAVPAKA-RKGIHPATRTFQALRIEVNDELEELEEALEAALDLLKPGGRLAVI 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 582337147 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVAE 308
Cdd:COG0275  243 SFHSLEDRIVKRFFREGSKGCECPPDLPVCECGHKPPLKLLTKKPIVPSEEEIARNPRARSAKLRVAE 310
Methyltransf_5 pfam01795
MraW methylase family; Members of this family are probably SAM dependent methyltransferases ...
 1-310 0e+00

MraW methylase family; Members of this family are probably SAM dependent methyltransferases based on Swiss:P18595. This family appears to be related to pfam01596.


Pssm-ID: 396387  Cd Length: 309  Bit Score: 524.21  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147    1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDdGRLIAIDQDQTAIDNAKEVLKDHLHKVTFVHSNFR 80
Cdd:pfam01795   1 EFHHIPVLLQETVDLLNPKPDGVYIDCTLGGGGHSEAILEQLPE-LRLIGIDRDPQAIARAKERLKPFEDRVTLVHGNFR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147   81 ELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFS 160
Cdd:pfam01795  80 FFKEALAELGVTKVDGILLDLGVSSPQLDGAERGFSFAHDAPLDMRMDQSQGLTAAEIVNTYSEEDLARIFKEYGEERFS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147  161 KQIARRIEAHREQQPITTTLELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240
Cdd:pfam01795 160 KRIARAIVERRKKKPIETTKELAEIISKAVPAKAKRKKGHPATRTFQALRIAVNDELESLEESLQQAPDLLAPGGRLAVI 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147  241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVAEIL 310
Cdd:pfam01795 240 SFHSLEDRIVKHFFREASKGPEVPAGLPVIPEGLEPKLRLITKKPITPSEEEIKENPRSRSAKLRVAEKI 309
TIGR00006 TIGR00006
16S rRNA (cytosine(1402)-N(4))-methyltransferase; This model describes RsmH, a 16S rRNA ...
 1-308 7.37e-144

16S rRNA (cytosine(1402)-N(4))-methyltransferase; This model describes RsmH, a 16S rRNA methyltransferase. Previously, this gene was designated MraW, known to be essential in E. coli and widely conserved in bacteria. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 272849  Cd Length: 307  Bit Score: 407.56  E-value: 7.37e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147    1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLnDDGRLIAIDQDQTAIDNAKEVLKDHlhKVTFVHSNFR 80
Cdd:TIGR00006   1 NFKHQSVLLDEVVEGLNIKPDGIYIDGTLGRGGHSKAILSQL-GEGRLIGIDRDPQAIAFAKEILSDL--RFVIIHDNFA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147   81 ELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFS 160
Cdd:TIGR00006  78 NFFEYLKELLVTKIDGILVDLGVSSPQLDDPERGFSFMHDGPLDMRMDQSQKLSAAEILNTYSEEDLEWILKKYGEERFS 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147  161 KQIARRIEAHREQQPITTTLELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240
Cdd:TIGR00006 158 KRIARAIVERRKKKPIQTTKELAEVISKAVPGFSKYKSIHPATRVFQAIRIYVNDELEELEEALQFAPNLLAPGGRLSII 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 582337147  241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVAE 308
Cdd:TIGR00006 238 SFHSLEDRIVKNFFRELSKGPQVPPGLPVKEEQLYALGKRITKKPITPSEEEIKENPRSRSAKLRVAE 305
 
Name Accession Description Interval E-value
RmsH COG0275
16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 1-308 0e+00

16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; 16S rRNA C1402 N4-methylase RsmH is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440044  Cd Length: 312  Bit Score: 529.25  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147   1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKDHLHKVTFVHSNFR 80
Cdd:COG0275    4 EFYHIPVLLEEVLEALAPKPGGVYVDGTLGGGGHSRAILERLGPGGRLIGIDRDPDAIAAAKERLAEFGDRFTLVHGNFS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147  81 ELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFS 160
Cdd:COG0275   84 ELDEVLAELGIEKVDGILLDLGVSSPQLDDAERGFSFRRDGPLDMRMDPSQGLTAADVLNTYSEEELARILREYGEERFA 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147 161 KQIARRIEAHREQQPITTTLELVDIIKEGIPAKArRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240
Cdd:COG0275  164 RRIARAIVEARKEKPITTTGELAEIIKRAVPAKA-RKGIHPATRTFQALRIEVNDELEELEEALEAALDLLKPGGRLAVI 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 582337147 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVAE 308
Cdd:COG0275  243 SFHSLEDRIVKRFFREGSKGCECPPDLPVCECGHKPPLKLLTKKPIVPSEEEIARNPRARSAKLRVAE 310
Methyltransf_5 pfam01795
MraW methylase family; Members of this family are probably SAM dependent methyltransferases ...
 1-310 0e+00

MraW methylase family; Members of this family are probably SAM dependent methyltransferases based on Swiss:P18595. This family appears to be related to pfam01596.


Pssm-ID: 396387  Cd Length: 309  Bit Score: 524.21  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147    1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDdGRLIAIDQDQTAIDNAKEVLKDHLHKVTFVHSNFR 80
Cdd:pfam01795   1 EFHHIPVLLQETVDLLNPKPDGVYIDCTLGGGGHSEAILEQLPE-LRLIGIDRDPQAIARAKERLKPFEDRVTLVHGNFR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147   81 ELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFS 160
Cdd:pfam01795  80 FFKEALAELGVTKVDGILLDLGVSSPQLDGAERGFSFAHDAPLDMRMDQSQGLTAAEIVNTYSEEDLARIFKEYGEERFS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147  161 KQIARRIEAHREQQPITTTLELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240
Cdd:pfam01795 160 KRIARAIVERRKKKPIETTKELAEIISKAVPAKAKRKKGHPATRTFQALRIAVNDELESLEESLQQAPDLLAPGGRLAVI 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147  241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVAEIL 310
Cdd:pfam01795 240 SFHSLEDRIVKHFFREASKGPEVPAGLPVIPEGLEPKLRLITKKPITPSEEEIKENPRSRSAKLRVAEKI 309
TIGR00006 TIGR00006
16S rRNA (cytosine(1402)-N(4))-methyltransferase; This model describes RsmH, a 16S rRNA ...
 1-308 7.37e-144

16S rRNA (cytosine(1402)-N(4))-methyltransferase; This model describes RsmH, a 16S rRNA methyltransferase. Previously, this gene was designated MraW, known to be essential in E. coli and widely conserved in bacteria. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 272849  Cd Length: 307  Bit Score: 407.56  E-value: 7.37e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147    1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLnDDGRLIAIDQDQTAIDNAKEVLKDHlhKVTFVHSNFR 80
Cdd:TIGR00006   1 NFKHQSVLLDEVVEGLNIKPDGIYIDGTLGRGGHSKAILSQL-GEGRLIGIDRDPQAIAFAKEILSDL--RFVIIHDNFA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147   81 ELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFS 160
Cdd:TIGR00006  78 NFFEYLKELLVTKIDGILVDLGVSSPQLDDPERGFSFMHDGPLDMRMDQSQKLSAAEILNTYSEEDLEWILKKYGEERFS 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147  161 KQIARRIEAHREQQPITTTLELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240
Cdd:TIGR00006 158 KRIARAIVERRKKKPIQTTKELAEVISKAVPGFSKYKSIHPATRVFQAIRIYVNDELEELEEALQFAPNLLAPGGRLSII 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 582337147  241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVAE 308
Cdd:TIGR00006 238 SFHSLEDRIVKNFFRELSKGPQVPPGLPVKEEQLYALGKRITKKPITPSEEEIKENPRSRSAKLRVAE 305
TrmR COG4122
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; ...
 35-100 2.41e-04

tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; tRNA 5-hydroxyU34 O-methylase TrmR/YrrM is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443298  Cd Length: 173  Bit Score: 40.94  E-value: 2.41e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 582337147  35 ALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKD--HLHKVTFVHSNFREltqILKDLNIEKVDGIYYD 100
Cdd:COG4122   31 TLWLARALPDDGRLTTIEIDPERAAIARENFARagLADRIRLILGDALE---VLPRLADGPFDLVFID 95
Methyltransf_31 pfam13847
Methyltransferase domain; This family appears to have methyltransferase activity.
 19-94 3.08e-04

Methyltransferase domain; This family appears to have methyltransferase activity.


Pssm-ID: 463998 [Multi-domain]  Cd Length: 150  Bit Score: 40.48  E-value: 3.08e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 582337147   19 KENGVYIDctLG-GAGHALYLLNQ-LNDDGRLIAIDQDQTAIDNAKEVLKDHLHK-VTFVHSNFRELTQILKDLNIEKV 94
Cdd:pfam13847   2 DKGMRVLD--LGcGTGHLSFELAEeLGPNAEVVGIDISEEAIEKARENAQKLGFDnVEFEQGDIEELPELLEDDKFDVV 78
SmtA COG0500
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ...
 30-98 6.15e-04

SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 440266 [Multi-domain]  Cd Length: 199  Bit Score: 40.28  E-value: 6.15e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147  30 GGAGHALYLLNQLNddGRLIAIDQDQTAIDNAKEVLKD-HLHKVTFVHSNFREltqiLKDLNIEKVDGIY 98
Cdd:COG0500   36 GTGRNLLALAARFG--GRVIGIDLSPEAIALARARAAKaGLGNVEFLVADLAE----LDPLPAESFDLVV 99
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
 30-82 7.77e-04

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 37.93  E-value: 7.77e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 582337147   30 GGAGHALYLLNQLNddGRLIAIDQDQTAIDNAKEVLKDHLHKVTFVHSNFREL 82
Cdd:pfam13649   7 GTGRLTLALARRGG--ARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAEDL 57
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 11-82 6.14e-03

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 36.51  E-value: 6.14e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 582337147  11 ETIDYLNVKENGVYIDctLG-GAGHALYLLNQLndDGRLIAIDQDQTAIDNAKEVLKDHLHKVTFVHSNFREL 82
Cdd:COG2226   13 ALLAALGLRPGARVLD--LGcGTGRLALALAER--GARVTGVDISPEMLELARERAAEAGLNVEFVVGDAEDL 81
Tam COG4106
Trans-aconitate methyltransferase [Energy production and conversion];
29-83 6.23e-03

Trans-aconitate methyltransferase [Energy production and conversion];


Pssm-ID: 443282 [Multi-domain]  Cd Length: 100  Bit Score: 35.57  E-value: 6.23e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 582337147  29 LG-GAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEvlkdHLHKVTFVHSNFRELT 83
Cdd:COG4106    8 LGcGTGRLTALLAERFPGARVTGVDLSPEMLARARA----RLPNVRFVVADLRDLD 59
Methyltransf_3 pfam01596
O-methyltransferase; Members of this family are O-methyltransferases. The family includes ...
 8-105 7.83e-03

O-methyltransferase; Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production.


Pssm-ID: 396257 [Multi-domain]  Cd Length: 203  Bit Score: 37.09  E-value: 7.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 582337147    8 MLNETIDYLNVKENGVYIDCTlggaghALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKDH--LHKVTFVHSNFRE-LTQ 84
Cdd:pfam01596  37 MLVKLTGAKNVLEIGVFTGYS------ALAMALALPEDGKITAIDIDPEAYEIAKKFIQKAgvAHKISFILGPALKvLEQ 110

                          90       100
                  ....*....|....*....|.
gi 582337147   85 ILKDLNIEKVDGIYYDLGVSS 105
Cdd:pfam01596 111 LTQDKPLPEFDFIFIDADKSN 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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