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Conserved domains on  [gi|582933802|gb|EWC17959|]
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pathogenicity island protein [Staphylococcus aureus M44988]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 10611174)

helix-turn-helix (HTH) domain-containing protein may bind DNA and function as a transcriptional regulator

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_Crp_2 pfam13545
Crp-like helix-turn-helix domain; This family represents a crp-like helix-turn-helix domain ...
 34-55 2.37e-04

Crp-like helix-turn-helix domain; This family represents a crp-like helix-turn-helix domain that is likely to bind DNA.


:

Pssm-ID: 463917 [Multi-domain]  Cd Length: 68  Bit Score: 35.90  E-value: 2.37e-04
                         10        20
                 ....*....|....*....|..
gi 582933802  34 LASILGISYSSVNRILKEWEKD 55
Cdd:pfam13545 28 LADLLGTTRETVSRVLSELRRE 49
 
Name Accession Description Interval E-value
HTH_Crp_2 pfam13545
Crp-like helix-turn-helix domain; This family represents a crp-like helix-turn-helix domain ...
 34-55 2.37e-04

Crp-like helix-turn-helix domain; This family represents a crp-like helix-turn-helix domain that is likely to bind DNA.


Pssm-ID: 463917 [Multi-domain]  Cd Length: 68  Bit Score: 35.90  E-value: 2.37e-04
                         10        20
                 ....*....|....*....|..
gi 582933802  34 LASILGISYSSVNRILKEWEKD 55
Cdd:pfam13545 28 LADLLGTTRETVSRVLSELRRE 49
Crp COG0664
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal ...
 34-55 1.63e-03

cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms];


Pssm-ID: 440428 [Multi-domain]  Cd Length: 207  Bit Score: 35.35  E-value: 1.63e-03
                         10        20
                 ....*....|....*....|..
gi 582933802  34 LASILGISYSSVNRILKEWEKD 55
Cdd:COG0664  164 IASYLGLTRETVSRILKKLEKE 185
 
Name Accession Description Interval E-value
HTH_Crp_2 pfam13545
Crp-like helix-turn-helix domain; This family represents a crp-like helix-turn-helix domain ...
 34-55 2.37e-04

Crp-like helix-turn-helix domain; This family represents a crp-like helix-turn-helix domain that is likely to bind DNA.


Pssm-ID: 463917 [Multi-domain]  Cd Length: 68  Bit Score: 35.90  E-value: 2.37e-04
                         10        20
                 ....*....|....*....|..
gi 582933802  34 LASILGISYSSVNRILKEWEKD 55
Cdd:pfam13545 28 LADLLGTTRETVSRVLSELRRE 49
Crp COG0664
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal ...
 34-55 1.63e-03

cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms];


Pssm-ID: 440428 [Multi-domain]  Cd Length: 207  Bit Score: 35.35  E-value: 1.63e-03
                         10        20
                 ....*....|....*....|..
gi 582933802  34 LASILGISYSSVNRILKEWEKD 55
Cdd:COG0664  164 IASYLGLTRETVSRILKKLEKE 185
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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