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Conserved domains on  [gi|582950769|gb|EWC39107|]
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Fe-S protein [Stutzerimonas stutzeri KOS6]

Protein Classification

DUF1289 domain-containing protein( domain architecture ID 10007186)

DUF1289 domain-containing protein similar to Escherichia coli YdhL

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdhL COG3313
Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];
5-57 1.50e-17

Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];


:

Pssm-ID: 442542  Cd Length: 59  Bit Score: 68.03  E-value: 1.50e-17
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 582950769  5 EKPVASPCVSLCALD-EDDLCVGCQRSADEIRRWGLMGNEERRQVLQRCSERAR 57
Cdd:COG3313   4 EQPVPSPCIGVCSLDpEDGVCRGCGRTLDEIARWSKMSDEERRAVLRRLPQRRA 57
 
Name Accession Description Interval E-value
YdhL COG3313
Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];
5-57 1.50e-17

Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];


Pssm-ID: 442542  Cd Length: 59  Bit Score: 68.03  E-value: 1.50e-17
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 582950769  5 EKPVASPCVSLCALD-EDDLCVGCQRSADEIRRWGLMGNEERRQVLQRCSERAR 57
Cdd:COG3313   4 EQPVPSPCIGVCSLDpEDGVCRGCGRTLDEIARWSKMSDEERRAVLRRLPQRRA 57
DUF1289 pfam06945
Protein of unknown function (DUF1289); This family consists of a number of hypothetical ...
 10-56 1.68e-17

Protein of unknown function (DUF1289); This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 462046  Cd Length: 47  Bit Score: 67.58  E-value: 1.68e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 582950769  10 SPCVSLCALDEDDLCVGCQRSADEIRRWGLMGNEERRQVLQRCSERA 56
Cdd:pfam06945  1 SPCIGVCSLDEDGLCRGCGRTLDEIAGWSRMSDEERRAVLARLPQRR 47
 
Name Accession Description Interval E-value
YdhL COG3313
Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];
5-57 1.50e-17

Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];


Pssm-ID: 442542  Cd Length: 59  Bit Score: 68.03  E-value: 1.50e-17
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 582950769  5 EKPVASPCVSLCALD-EDDLCVGCQRSADEIRRWGLMGNEERRQVLQRCSERAR 57
Cdd:COG3313   4 EQPVPSPCIGVCSLDpEDGVCRGCGRTLDEIARWSKMSDEERRAVLRRLPQRRA 57
DUF1289 pfam06945
Protein of unknown function (DUF1289); This family consists of a number of hypothetical ...
 10-56 1.68e-17

Protein of unknown function (DUF1289); This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 462046  Cd Length: 47  Bit Score: 67.58  E-value: 1.68e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 582950769  10 SPCVSLCALDEDDLCVGCQRSADEIRRWGLMGNEERRQVLQRCSERA 56
Cdd:pfam06945  1 SPCIGVCSLDEDGLCRGCGRTLDEIAGWSRMSDEERRAVLARLPQRR 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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