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Conserved domains on  [gi|585005104|gb|EWL28483|]
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hypothetical protein U539_02688 [Staphylococcus aureus H47671]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3387 super family cl13329
Domain of unknown function (DUF3387); This domain is functionally uncharacterized. This domain ...
 7-85 4.15e-33

Domain of unknown function (DUF3387); This domain is functionally uncharacterized. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with pfam04851, pfam04313.


The actual alignment was detected with superfamily member pfam11867:

Pssm-ID: 432144  Cd Length: 331  Bit Score: 116.09  E-value: 4.15e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 585005104    7 ASHETAKEALGDKELRAIAHELTKTVKDNMSVDWSKRDSAKAKMRVQVRRLLKKYGYPPDLQKMAVEQVVEQAELMASQ 85
Cdd:pfam11867 253 AENESAVEVMGDDKLKEIARELVETVRKNATVDWTKREDVRAKLRVAVKRLLRKYGYPPDKQEEAVELVLEQAELLAKE 331
 
Name Accession Description Interval E-value
DUF3387 pfam11867
Domain of unknown function (DUF3387); This domain is functionally uncharacterized. This domain ...
 7-85 4.15e-33

Domain of unknown function (DUF3387); This domain is functionally uncharacterized. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with pfam04851, pfam04313.


Pssm-ID: 432144  Cd Length: 331  Bit Score: 116.09  E-value: 4.15e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 585005104    7 ASHETAKEALGDKELRAIAHELTKTVKDNMSVDWSKRDSAKAKMRVQVRRLLKKYGYPPDLQKMAVEQVVEQAELMASQ 85
Cdd:pfam11867 253 AENESAVEVMGDDKLKEIARELVETVRKNATVDWTKREDVRAKLRVAVKRLLRKYGYPPDKQEEAVELVLEQAELLAKE 331
COG0610 COG0610
Type I site-specific restriction-modification system, R (restriction) subunit and related ...
 13-79 5.48e-16

Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ... [Defense mechanisms];


Pssm-ID: 440375 [Multi-domain]  Cd Length: 936  Bit Score: 70.67  E-value: 5.48e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 585005104  13 KEALGDKELRAIAHELTKTVKDNMSVDWSKRDSAKAKMRVQVRRLLKKYGYPpdLQKMAVEQVVEQA 79
Cdd:COG0610  872 AENLGDEKLKELAKELDDLLKKNVTVDWRKRESVRAKLRDAIKRLLRKYGYP--KQDEAVEEVYEQA 936
 
Name Accession Description Interval E-value
DUF3387 pfam11867
Domain of unknown function (DUF3387); This domain is functionally uncharacterized. This domain ...
 7-85 4.15e-33

Domain of unknown function (DUF3387); This domain is functionally uncharacterized. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with pfam04851, pfam04313.


Pssm-ID: 432144  Cd Length: 331  Bit Score: 116.09  E-value: 4.15e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 585005104    7 ASHETAKEALGDKELRAIAHELTKTVKDNMSVDWSKRDSAKAKMRVQVRRLLKKYGYPPDLQKMAVEQVVEQAELMASQ 85
Cdd:pfam11867 253 AENESAVEVMGDDKLKEIARELVETVRKNATVDWTKREDVRAKLRVAVKRLLRKYGYPPDKQEEAVELVLEQAELLAKE 331
COG0610 COG0610
Type I site-specific restriction-modification system, R (restriction) subunit and related ...
 13-79 5.48e-16

Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ... [Defense mechanisms];


Pssm-ID: 440375 [Multi-domain]  Cd Length: 936  Bit Score: 70.67  E-value: 5.48e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 585005104  13 KEALGDKELRAIAHELTKTVKDNMSVDWSKRDSAKAKMRVQVRRLLKKYGYPpdLQKMAVEQVVEQA 79
Cdd:COG0610  872 AENLGDEKLKELAKELDDLLKKNVTVDWRKRESVRAKLRDAIKRLLRKYGYP--KQDEAVEEVYEQA 936
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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