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Conserved domains on  [gi|600315353|gb|EYM15417|]
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hypothetical protein V710_00568 [Staphylococcus aureus T59813]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF961 super family cl05582
Bacterial protein of unknown function (DUF961); This family consists of several hypothetical ...
 6-94 1.84e-10

Bacterial protein of unknown function (DUF961); This family consists of several hypothetical bacterial proteins of unknown function.


The actual alignment was detected with superfamily member pfam06125:

Pssm-ID: 461834  Cd Length: 96  Bit Score: 52.75  E-value: 1.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 600315353    6 DIKKTLGQLNFLGVDEKYKYENGE---RTDKTVYAYKLASQEQGEQITVKTPNKV---ELDYLQECELVEPDVKMYVQMS 79
Cdd:pfam06125   1 DMEKTFGTLKFAGERREVRVENEDgnrRTEVKSRSYNLYSSVQGDDIQVSIPAEAgekEFPYNAEVKLVNPKIDAVGNAI 80

                          90
                  ....*....|....*
gi 600315353   80 GDFGTIAYSWNAEDI 94
Cdd:pfam06125  81 NGRGFVDWKLKADDI 95
 
Name Accession Description Interval E-value
DUF961 pfam06125
Bacterial protein of unknown function (DUF961); This family consists of several hypothetical ...
 6-94 1.84e-10

Bacterial protein of unknown function (DUF961); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 461834  Cd Length: 96  Bit Score: 52.75  E-value: 1.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 600315353    6 DIKKTLGQLNFLGVDEKYKYENGE---RTDKTVYAYKLASQEQGEQITVKTPNKV---ELDYLQECELVEPDVKMYVQMS 79
Cdd:pfam06125   1 DMEKTFGTLKFAGERREVRVENEDgnrRTEVKSRSYNLYSSVQGDDIQVSIPAEAgekEFPYNAEVKLVNPKIDAVGNAI 80

                          90
                  ....*....|....*
gi 600315353   80 GDFGTIAYSWNAEDI 94
Cdd:pfam06125  81 NGRGFVDWKLKADDI 95
 
Name Accession Description Interval E-value
DUF961 pfam06125
Bacterial protein of unknown function (DUF961); This family consists of several hypothetical ...
 6-94 1.84e-10

Bacterial protein of unknown function (DUF961); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 461834  Cd Length: 96  Bit Score: 52.75  E-value: 1.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 600315353    6 DIKKTLGQLNFLGVDEKYKYENGE---RTDKTVYAYKLASQEQGEQITVKTPNKV---ELDYLQECELVEPDVKMYVQMS 79
Cdd:pfam06125   1 DMEKTFGTLKFAGERREVRVENEDgnrRTEVKSRSYNLYSSVQGDDIQVSIPAEAgekEFPYNAEVKLVNPKIDAVGNAI 80

                          90
                  ....*....|....*
gi 600315353   80 GDFGTIAYSWNAEDI 94
Cdd:pfam06125  81 NGRGFVDWKLKADDI 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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