NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|600880736|gb|EYQ71876|]
View 

hypothetical protein W274_02730 [Staphylococcus aureus DAR2075]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF722 super family cl23883
Protein of unknown function (DUF722); This family contains several bacteriophage proteins of ...
 3-136 7.80e-31

Protein of unknown function (DUF722); This family contains several bacteriophage proteins of unknown function.


The actual alignment was detected with superfamily member TIGR01636:

Pssm-ID: 451594  Cd Length: 134  Bit Score: 107.30  E-value: 7.80e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 600880736    3 LRKSTQRYLESELSNYNYFDKDIASVRDEVLNPWSQQDTNIGGDRVQSNVSVTEIKAIRVVNDRRLSQLARMKSAIEVVY 82
Cdd:TIGR01636   1 LRTSTFNYIEDELADYYKTEKYLRQREEELRHPYQEADLNAGGRGQGLHSVVTERMVITIAMDRRLWNLERNRDAIENCL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 600880736   83 NHSTVETQKLMELYYFKKpRTLNLTGVAQEINVSKSTAYDMRKDILTRLADELG 136
Cdd:TIGR01636  81 NEADEQTRVIIQELYMKK-RPLTLVGLAQQLFISKSTAYRLRNHIIEAVAEELG 133
 
Name Accession Description Interval E-value
phage_rinA TIGR01636
phage transcriptional activator, RinA family; This model represents a family of phage proteins, ...
 3-136 7.80e-31

phage transcriptional activator, RinA family; This model represents a family of phage proteins, including RinA, a transcriptional activator in staphylococcal phage phi 11. This family shows similarity to ArpU, a phage-related putative autolysin regulator, and to some sporulation-specific sigma factors. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]


Pssm-ID: 130697  Cd Length: 134  Bit Score: 107.30  E-value: 7.80e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 600880736    3 LRKSTQRYLESELSNYNYFDKDIASVRDEVLNPWSQQDTNIGGDRVQSNVSVTEIKAIRVVNDRRLSQLARMKSAIEVVY 82
Cdd:TIGR01636   1 LRTSTFNYIEDELADYYKTEKYLRQREEELRHPYQEADLNAGGRGQGLHSVVTERMVITIAMDRRLWNLERNRDAIENCL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 600880736   83 NHSTVETQKLMELYYFKKpRTLNLTGVAQEINVSKSTAYDMRKDILTRLADELG 136
Cdd:TIGR01636  81 NEADEQTRVIIQELYMKK-RPLTLVGLAQQLFISKSTAYRLRNHIIEAVAEELG 133
FliA COG1191
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ...
 90-136 5.16e-03

DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 440804 [Multi-domain]  Cd Length: 236  Bit Score: 35.57  E-value: 5.16e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 600880736  90 QKLMELYYFKKprtLNLTGVAQEINVSKSTAYDMRKDILTRLADELG 136
Cdd:COG1191  192 RLVLSLYYFEE---LTLKEIAEVLGVSESRVSRLHKKALARLREYLK 235
 
Name Accession Description Interval E-value
phage_rinA TIGR01636
phage transcriptional activator, RinA family; This model represents a family of phage proteins, ...
 3-136 7.80e-31

phage transcriptional activator, RinA family; This model represents a family of phage proteins, including RinA, a transcriptional activator in staphylococcal phage phi 11. This family shows similarity to ArpU, a phage-related putative autolysin regulator, and to some sporulation-specific sigma factors. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]


Pssm-ID: 130697  Cd Length: 134  Bit Score: 107.30  E-value: 7.80e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 600880736    3 LRKSTQRYLESELSNYNYFDKDIASVRDEVLNPWSQQDTNIGGDRVQSNVSVTEIKAIRVVNDRRLSQLARMKSAIEVVY 82
Cdd:TIGR01636   1 LRTSTFNYIEDELADYYKTEKYLRQREEELRHPYQEADLNAGGRGQGLHSVVTERMVITIAMDRRLWNLERNRDAIENCL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 600880736   83 NHSTVETQKLMELYYFKKpRTLNLTGVAQEINVSKSTAYDMRKDILTRLADELG 136
Cdd:TIGR01636  81 NEADEQTRVIIQELYMKK-RPLTLVGLAQQLFISKSTAYRLRNHIIEAVAEELG 133
FliA COG1191
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ...
 90-136 5.16e-03

DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 440804 [Multi-domain]  Cd Length: 236  Bit Score: 35.57  E-value: 5.16e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 600880736  90 QKLMELYYFKKprtLNLTGVAQEINVSKSTAYDMRKDILTRLADELG 136
Cdd:COG1191  192 RLVLSLYYFEE---LTLKEIAEVLGVSESRVSRLHKKALARLREYLK 235
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH