NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|612532802|gb|EZR51870|]
View 

hypothetical protein W734_01859 [Staphylococcus aureus VET1896R]

Protein Classification

tandem-type lipoprotein( domain architecture ID 581133)

tandem-type lipoprotein is a DUF576 domain-containing protein; similar to Staphylococcus aureus lipoproteins

CATH:  2.50.20.40
Gene Ontology:  GO:0005886
PubMed:  23895222

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF576 super family cl23996
Csa1 family; This family contains several uncharacterized staphylococcal proteins. These ...
 1-89 3.21e-49

Csa1 family; This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).


The actual alignment was detected with superfamily member pfam04507:

Pssm-ID: 420141  Cd Length: 225  Bit Score: 155.23  E-value: 3.21e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612532802    1 MENYKDGEVTYNPEAPIYSAQYQLKNSDYNVEQLRKRYNIPTQKAPKLLLKGSGNLKGSSVGYKNIEFTFVENKGENIYF 80
Cdd:pfam04507 137 LKNYKDGDISYNPNVPSYSAKYQLSNDDYNVKQLRKRYDIPTNKAPKLLLKGDGDLKGSSVGYKKLEFTFVENKKENIYF 216


                  ....*....
gi 612532802   81 TDSVYFNPS 89
Cdd:pfam04507 217 TDSLNFNPS 225
 
Name Accession Description Interval E-value
DUF576 pfam04507
Csa1 family; This family contains several uncharacterized staphylococcal proteins. These ...
 1-89 3.21e-49

Csa1 family; This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).


Pssm-ID: 398286  Cd Length: 225  Bit Score: 155.23  E-value: 3.21e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612532802    1 MENYKDGEVTYNPEAPIYSAQYQLKNSDYNVEQLRKRYNIPTQKAPKLLLKGSGNLKGSSVGYKNIEFTFVENKGENIYF 80
Cdd:pfam04507 137 LKNYKDGDISYNPNVPSYSAKYQLSNDDYNVKQLRKRYDIPTNKAPKLLLKGDGDLKGSSVGYKKLEFTFVENKKENIYF 216


                  ....*....
gi 612532802   81 TDSVYFNPS 89
Cdd:pfam04507 217 TDSLNFNPS 225
SA_tandem_lipo TIGR01742
Staphylococcus tandem lipoproteins; Members of this family are predicted lipoproteins (mostly), ...
 1-89 6.04e-35

Staphylococcus tandem lipoproteins; Members of this family are predicted lipoproteins (mostly), found in Staphylococcus aureus in several different tandem clusters in pathogenicity islands. Members are also found, clustered, in Staphylococcus epidermidis.


Pssm-ID: 273786  Cd Length: 255  Bit Score: 119.56  E-value: 6.04e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612532802    1 MENYKDGEVTYNPEAPIYSAQYQLKNSDYNVEQLRKRYNIPTQKAPKLLLKGSGNLKGSSVGYKNIEFTFVENKGENIYF 80
Cdd:TIGR01742 167 LLNYNDGDVSYNPNVPSYSAKYKLSNDDPNVKQLKKRYNIPTNKAPKLLLKGSGDLKGSSVGYKKLEFYFSSPGKEQIIY 246


                  ....*....
gi 612532802   81 TDSVYFNPS 89
Cdd:TIGR01742 247 KDSLTYNPI 255
 
Name Accession Description Interval E-value
DUF576 pfam04507
Csa1 family; This family contains several uncharacterized staphylococcal proteins. These ...
 1-89 3.21e-49

Csa1 family; This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).


Pssm-ID: 398286  Cd Length: 225  Bit Score: 155.23  E-value: 3.21e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612532802    1 MENYKDGEVTYNPEAPIYSAQYQLKNSDYNVEQLRKRYNIPTQKAPKLLLKGSGNLKGSSVGYKNIEFTFVENKGENIYF 80
Cdd:pfam04507 137 LKNYKDGDISYNPNVPSYSAKYQLSNDDYNVKQLRKRYDIPTNKAPKLLLKGDGDLKGSSVGYKKLEFTFVENKKENIYF 216


                  ....*....
gi 612532802   81 TDSVYFNPS 89
Cdd:pfam04507 217 TDSLNFNPS 225
SA_tandem_lipo TIGR01742
Staphylococcus tandem lipoproteins; Members of this family are predicted lipoproteins (mostly), ...
 1-89 6.04e-35

Staphylococcus tandem lipoproteins; Members of this family are predicted lipoproteins (mostly), found in Staphylococcus aureus in several different tandem clusters in pathogenicity islands. Members are also found, clustered, in Staphylococcus epidermidis.


Pssm-ID: 273786  Cd Length: 255  Bit Score: 119.56  E-value: 6.04e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612532802    1 MENYKDGEVTYNPEAPIYSAQYQLKNSDYNVEQLRKRYNIPTQKAPKLLLKGSGNLKGSSVGYKNIEFTFVENKGENIYF 80
Cdd:TIGR01742 167 LLNYNDGDVSYNPNVPSYSAKYKLSNDDPNVKQLKKRYNIPTNKAPKLLLKGSGDLKGSSVGYKKLEFYFSSPGKEQIIY 246


                  ....*....
gi 612532802   81 TDSVYFNPS 89
Cdd:TIGR01742 247 KDSLTYNPI 255
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH