|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
122-480 |
7.67e-159 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 458.08 E-value: 7.67e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 122 QVYREMYDQARERGRSREPNlFRSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPV 201
Cdd:COG3829 117 RLERKLREEELERGLSAKYT-FDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAV 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 202 NCGAIPAELLESELFGHEKGAFTGAITS-RAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDV 280
Cdd:COG3829 196 NCAAIPENLLESELFGYEKGAFTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDV 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 281 RIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVEDIALLLNELISRMEHEKRGSI-RFNSAAIMSLCRHDWP 359
Cdd:COG3829 276 RIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIkGISPEALELLLAYDWP 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 360 GNVRELANLVERLAIMHPYGVIGVGELPKKFRHvddedeqlasslreeleeraainaglpgmDAPAMLPAEGLDLKDYLA 439
Cdd:COG3829 356 GNVRELENVIERAVVLSEGDVITPEHLPEYLLE-----------------------------EAEAASAAEEGSLKEALE 406
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1775801957 440 NLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYGM 480
Cdd:COG3829 407 EVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGI 447
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
143-479 |
2.25e-124 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 374.61 E-value: 2.25e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 143 FRSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRrEGPFVPVNCGAIPAELLESELFGHEKGA 222
Cdd:NF041552 266 FGKIIGKSKKIIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHQASGR-KGPFVPVNCSAIPEELFESEFFGYEEGA 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 223 FTGAITS-RAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFRE 301
Cdd:NF041552 345 FTGALKKgKIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFRE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 302 DLYYRLNVFPIEMAPLRERVEDIALLLNELISRM-EHEKRGSIRFNSAAIMSLCRHDWPGNVRELANLVERLAIMHPYGV 380
Cdd:NF041552 425 DLYYRLNVVEIELPPLRERKEDIPLLINYFLKEIcKENNKEIPKIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGT 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 381 IGVGELPKKFRHVDDEDEQlasslreeleeraainaglpgmdapaMLPAEGLDLKDYLANLEQGLIQQALDDAGGVVARA 460
Cdd:NF041552 505 ITKDSIPEYILESVKKKED--------------------------EEGDYPLDLNKAVEKLEIDTIKKALEMSNGNKAKA 558
|
330
....*....|....*....
gi 1775801957 461 AERLRIRRTTLVEKMRKYG 479
Cdd:NF041552 559 AKLLNIPRSTLYYKLKQYG 577
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
146-313 |
7.35e-114 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 332.83 E-value: 7.35e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 146 LVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTG 225
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 226 AITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYY 305
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 1775801957 306 RLNVFPIE 313
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
129-479 |
1.21e-108 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 332.84 E-value: 1.21e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 129 DQARERGRSREPNLFRS-------LVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPV 201
Cdd:TIGR01817 174 VQLSKQLRDKAPEIARRrsgkedgIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKV 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 202 NCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVR 281
Cdd:TIGR01817 254 NCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVR 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 282 IIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVEDIALLLNELISRMEHEKRGSIRFNSAAIMSLCRHDWPGN 361
Cdd:TIGR01817 334 LVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGN 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 362 VRELANLVERLAIMHPYGVIGVGELpkKFRHVDDEDEQLASSLREELEE-RAAINAGLPGMDAPAMLPAEGLDLKDYLAN 440
Cdd:TIGR01817 414 VRELENCLERTATLSRSGTITRSDF--SCQSGQCLSPMLAKTCPHGHISiDPLAGTTPPHSPASAALPGEPGLSGPTLSE 491
|
330 340 350
....*....|....*....|....*....|....*....
gi 1775801957 441 LEQgLIqQALDDAGGVVARAAERLRIRRTTLVEKMRKYG 479
Cdd:TIGR01817 492 RER-LI-AALEQAGWVQAKAARLLGMTPRQVGYALRKLN 528
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
167-480 |
1.75e-105 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 324.52 E-value: 1.75e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 167 DASVLILGESGTGKEVVARNLHYHSKRR---EGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLF 243
Cdd:NF038308 203 RAPILLTGPTGAGKSFLARRIYELKKRRhqvSGPFVEVNCATLRGDLAMSELFGHVKGAFTGAQADRAGLLRAADGGTLF 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 244 LDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVED 323
Cdd:NF038308 283 LDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLYARINLWTFRLPGLRERRED 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 324 IALLLNELISRMEHEKRGSIRFNS------AAIMSLCRHDWPGNVRELANLVERLAIMHPYGVIGVGElpkkfrhVDDED 397
Cdd:NF038308 363 IEPNLDYELDRFARELGRQVRFNKearfryLAFATSPEALWPGNFRELSASVTRMATLADGGRITEEL-------VEEEI 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 398 EQLASSLREELeeraainAGLPGMDAPAMLPAEGLDLKDYLANLEQGLIQQALDDAGGVVARAAERLRIRRTTL-----V 472
Cdd:NF038308 436 ARLRAAWQSAP-------AAADDDALADLLGGEQLAELDLFDRVQLAAVLRVCRQSRSLSAAGRRLFGVSRQQKaspndA 508
|
....*...
gi 1775801957 473 EKMRKYGM 480
Cdd:NF038308 509 DRLRKYLA 516
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
164-480 |
1.01e-104 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 320.26 E-value: 1.01e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 164 ADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLF 243
Cdd:PRK11361 163 ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 244 LDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVED 323
Cdd:PRK11361 243 LDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRRED 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 324 IALLLNELISRMEHE-KRGSIRFNSAAIMSLCRHDWPGNVRELANLVERLAIMHPYGVIGVGELPKKFrhvddedeqlas 402
Cdd:PRK11361 323 ISLLANHFLQKFSSEnQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQI------------ 390
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1775801957 403 slreeleeRAAINAGLPGMDAPamlPAEgLDLKDYLANLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYGM 480
Cdd:PRK11361 391 --------RQPVCNAGEVKTAP---VGE-RNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGI 456
|
|
| FleQ |
pfam06490 |
Flagellar regulatory protein FleQ; This domain is found at the N terminus of a subset of ... |
6-123 |
5.98e-35 |
|
Flagellar regulatory protein FleQ; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Pssm-ID: 428975 [Multi-domain] Cd Length: 108 Bit Score: 126.15 E-value: 5.98e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 6 KLLLIDDNLDRSRDLAVILNFLGEDQLTCNSEDWreVAAGLSNSREALCVLLGSVESKggavELLKQLASWDEYLPILLI 85
Cdd:pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAISSEDL--SAALWSSRWEALAVILGSVSAA----ELLKALAKWDPHLPVLLL 74
|
90 100 110
....*....|....*....|....*....|....*....
gi 1775801957 86 GE-PAPADWPEelrrrVLASLEMPPSYNKLLDSLHRAQV 123
Cdd:pfam06490 75 GEtDDALELAN-----VIGTLEEPLNYPQLTDLLHRCQV 108
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
165-308 |
4.90e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 94.91 E-value: 4.90e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 165 DTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEkgaftgAITSRAGRFELANGGTLFL 244
Cdd:cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLLFELAEKAKPGVLFI 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1775801957 245 DEIGDMPLPMQVKLLRVLQERTFERVgsnktQNVDVRIIAATHKNlekmiEDGTFREDLYYRLN 308
Cdd:cd00009 91 DEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRP-----LLGDLDRALYDRLD 144
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
169-307 |
7.82e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.16 E-value: 7.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 169 SVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLE--SELFGHEKGAFTGAITSRAGRFELA---NGGTLF 243
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqlLLIIVGGKKASGSGELRLRLALALArklKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1775801957 244 LDEIGDMPLPMQVKLLRVLQErtfERVGSNKTQNVDVRIIAATH--KNLEKMIEDGTFREDLYYRL 307
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
122-480 |
7.67e-159 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 458.08 E-value: 7.67e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 122 QVYREMYDQARERGRSREPNlFRSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPV 201
Cdd:COG3829 117 RLERKLREEELERGLSAKYT-FDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAV 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 202 NCGAIPAELLESELFGHEKGAFTGAITS-RAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDV 280
Cdd:COG3829 196 NCAAIPENLLESELFGYEKGAFTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDV 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 281 RIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVEDIALLLNELISRMEHEKRGSI-RFNSAAIMSLCRHDWP 359
Cdd:COG3829 276 RIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIkGISPEALELLLAYDWP 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 360 GNVRELANLVERLAIMHPYGVIGVGELPKKFRHvddedeqlasslreeleeraainaglpgmDAPAMLPAEGLDLKDYLA 439
Cdd:COG3829 356 GNVRELENVIERAVVLSEGDVITPEHLPEYLLE-----------------------------EAEAASAAEEGSLKEALE 406
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1775801957 440 NLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYGM 480
Cdd:COG3829 407 EVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGI 447
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
6-479 |
1.31e-152 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 440.94 E-value: 1.31e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 6 KLLLIDDNLDRSRDLAVILNFLGEDQLTCNS-EDWREVAaglsNSREALCVLLGSVESKGGAVELLKQLASWDEYLPILL 84
Cdd:COG2204 4 RILVVDDDPDIRRLLKELLERAGYEVETAASgEEALALL----REEPPDLVLLDLRMPGMDGLELLRELRALDPDLPVIL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 85 I-GEPAPADWPEELRRRVLASLEMPPSYNKLLDSLHRAQVYREMYDQARERgrsrepnlfRSLVGTSRAIQQVRQMMQQV 163
Cdd:COG2204 80 LtGYGDVETAVEAIKAGAFDYLTKPFDLEELLAAVERALERRRLRRENAED---------SGLIGRSPAMQEVRRLIEKV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 164 ADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLF 243
Cdd:COG2204 151 APSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVARRIGKFELADGGTLF 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 244 LDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVED 323
Cdd:COG2204 231 LDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERRED 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 324 IALLLNELISRMEHEKRGSIRFNSAAIMSLCRHDWPGNVRELANLVERLAIMHPYGVIGVGELPkkfrhvddedeqlass 403
Cdd:COG2204 311 IPLLARHFLARFAAELGKPVKLSPEALEALLAYDWPGNVRELENVIERAVILADGEVITAEDLP---------------- 374
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1775801957 404 lreeleeraainaglpgmdapamlpaegldlkDYLANLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYG 479
Cdd:COG2204 375 --------------------------------EALEEVERELIERALEETGGNVSRAAELLGISRRTLYRKLKKYG 418
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
143-479 |
2.25e-124 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 374.61 E-value: 2.25e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 143 FRSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRrEGPFVPVNCGAIPAELLESELFGHEKGA 222
Cdd:NF041552 266 FGKIIGKSKKIIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHQASGR-KGPFVPVNCSAIPEELFESEFFGYEEGA 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 223 FTGAITS-RAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFRE 301
Cdd:NF041552 345 FTGALKKgKIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFRE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 302 DLYYRLNVFPIEMAPLRERVEDIALLLNELISRM-EHEKRGSIRFNSAAIMSLCRHDWPGNVRELANLVERLAIMHPYGV 380
Cdd:NF041552 425 DLYYRLNVVEIELPPLRERKEDIPLLINYFLKEIcKENNKEIPKIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGT 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 381 IGVGELPKKFRHVDDEDEQlasslreeleeraainaglpgmdapaMLPAEGLDLKDYLANLEQGLIQQALDDAGGVVARA 460
Cdd:NF041552 505 ITKDSIPEYILESVKKKED--------------------------EEGDYPLDLNKAVEKLEIDTIKKALEMSNGNKAKA 558
|
330
....*....|....*....
gi 1775801957 461 AERLRIRRTTLVEKMRKYG 479
Cdd:NF041552 559 AKLLNIPRSTLYYKLKQYG 577
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
136-479 |
7.38e-118 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 359.21 E-value: 7.38e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 136 RSREPNLFRSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESEL 215
Cdd:COG3284 313 GAPAPAALAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESEL 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 216 FGHEKGAFTGAITS-RAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMI 294
Cdd:COG3284 393 FGYEPGAFTGARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELV 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 295 EDGTFREDLYYRLNVFPIEMAPLRERvEDIALLLNELISRmEHEKRGSIRFNSAAIMSLCRHDWPGNVRELANLVERLAI 374
Cdd:COG3284 473 AAGRFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLLRE-LAAGRGPLRLSPEALALLAAYPWPGNVRELRNVLRTALA 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 375 MHPYGVIGVGELPkkfrhvddedeqlasslrEELeeRAAINAGLPGMDAPAMLpaegldlkdyLANLEQGLIQQALDDAG 454
Cdd:COG3284 551 LADGGVITVEDLP------------------DEL--RAELAAAAPAAAAPLTS----------LEEAERDAILRALRACG 600
|
330 340
....*....|....*....|....*
gi 1775801957 455 GVVARAAERLRIRRTTLVEKMRKYG 479
Cdd:COG3284 601 GNVSAAARALGISRSTLYRKLKRYG 625
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
146-313 |
7.35e-114 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 332.83 E-value: 7.35e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 146 LVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTG 225
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 226 AITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYY 305
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 1775801957 306 RLNVFPIE 313
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
129-479 |
1.21e-108 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 332.84 E-value: 1.21e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 129 DQARERGRSREPNLFRS-------LVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPV 201
Cdd:TIGR01817 174 VQLSKQLRDKAPEIARRrsgkedgIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKV 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 202 NCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVR 281
Cdd:TIGR01817 254 NCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVR 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 282 IIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVEDIALLLNELISRMEHEKRGSIRFNSAAIMSLCRHDWPGN 361
Cdd:TIGR01817 334 LVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGN 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 362 VRELANLVERLAIMHPYGVIGVGELpkKFRHVDDEDEQLASSLREELEE-RAAINAGLPGMDAPAMLPAEGLDLKDYLAN 440
Cdd:TIGR01817 414 VRELENCLERTATLSRSGTITRSDF--SCQSGQCLSPMLAKTCPHGHISiDPLAGTTPPHSPASAALPGEPGLSGPTLSE 491
|
330 340 350
....*....|....*....|....*....|....*....
gi 1775801957 441 LEQgLIqQALDDAGGVVARAAERLRIRRTTLVEKMRKYG 479
Cdd:TIGR01817 492 RER-LI-AALEQAGWVQAKAARLLGMTPRQVGYALRKLN 528
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
167-480 |
1.75e-105 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 324.52 E-value: 1.75e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 167 DASVLILGESGTGKEVVARNLHYHSKRR---EGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLF 243
Cdd:NF038308 203 RAPILLTGPTGAGKSFLARRIYELKKRRhqvSGPFVEVNCATLRGDLAMSELFGHVKGAFTGAQADRAGLLRAADGGTLF 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 244 LDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVED 323
Cdd:NF038308 283 LDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLYARINLWTFRLPGLRERRED 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 324 IALLLNELISRMEHEKRGSIRFNS------AAIMSLCRHDWPGNVRELANLVERLAIMHPYGVIGVGElpkkfrhVDDED 397
Cdd:NF038308 363 IEPNLDYELDRFARELGRQVRFNKearfryLAFATSPEALWPGNFRELSASVTRMATLADGGRITEEL-------VEEEI 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 398 EQLASSLREELeeraainAGLPGMDAPAMLPAEGLDLKDYLANLEQGLIQQALDDAGGVVARAAERLRIRRTTL-----V 472
Cdd:NF038308 436 ARLRAAWQSAP-------AAADDDALADLLGGEQLAELDLFDRVQLAAVLRVCRQSRSLSAAGRRLFGVSRQQKaspndA 508
|
....*...
gi 1775801957 473 EKMRKYGM 480
Cdd:NF038308 509 DRLRKYLA 516
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
164-480 |
1.01e-104 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 320.26 E-value: 1.01e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 164 ADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLF 243
Cdd:PRK11361 163 ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 244 LDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVED 323
Cdd:PRK11361 243 LDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRRED 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 324 IALLLNELISRMEHE-KRGSIRFNSAAIMSLCRHDWPGNVRELANLVERLAIMHPYGVIGVGELPKKFrhvddedeqlas 402
Cdd:PRK11361 323 ISLLANHFLQKFSSEnQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQI------------ 390
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1775801957 403 slreeleeRAAINAGLPGMDAPamlPAEgLDLKDYLANLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYGM 480
Cdd:PRK11361 391 --------RQPVCNAGEVKTAP---VGE-RNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGI 456
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
146-476 |
1.77e-104 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 319.76 E-value: 1.77e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 146 LVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTG 225
Cdd:TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 226 AITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYY 305
Cdd:TIGR01818 216 ANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 306 RLNVFPIEMAPLRERVEDIALLLNELISRMehEKRGSI---RFNSAAIMSLCRHDWPGNVRELANLVERLAIMHPYGVIG 382
Cdd:TIGR01818 296 RLNVIRIHLPPLRERREDIPRLARHFLALA--ARELDVepkLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDEVL 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 383 V----GELPKKFRHVDDEDEQLASSLREELEE--RAAINAGLPGMDAPAmlpaegldlkdyLANLEQGLIQQALDDAGGV 456
Cdd:TIGR01818 374 VsdlpAELALTGRPASAPDSDGQDSWDEALEAwaKQALSRGEQGLLDRA------------LPEFERPLLEAALQHTRGH 441
|
330 340
....*....|....*....|
gi 1775801957 457 VARAAERLRIRRTTLVEKMR 476
Cdd:TIGR01818 442 KQEAAALLGWGRNTLTRKLK 461
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
115-480 |
1.07e-103 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 319.04 E-value: 1.07e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 115 LDSLHRAQVYREMYDQARErgrsrepnlfrsLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRR 194
Cdd:PRK05022 170 ELPQDVAEFLRQEALKEGE------------MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 195 EGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNK 274
Cdd:PRK05022 238 DKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDR 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 275 TQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVEDIALL----LNELISRMeheKRGSIRFNSAAI 350
Cdd:PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLagyfLEQNRARL---GLRSLRLSPAAQ 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 351 MSLCRHDWPGNVRELANLVERLAImhpygvigvgelpKKFRHVDDEDEQLASSLReELEERAAINAGLPgmdAPAMLPAE 430
Cdd:PRK05022 395 AALLAYDWPGNVRELEHVISRAAL-------------LARARGAGRIVTLEAQHL-DLPAEVALPPPEA---AAAPAAVV 457
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1775801957 431 GLDLKDYLANLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYGM 480
Cdd:PRK05022 458 SQNLREATEAFQRQLIRQALAQHQGNWAAAARALELDRANLHRLAKRLGL 507
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
120-480 |
1.66e-100 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 308.99 E-value: 1.66e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 120 RAQVYREMYDQARERGRSREPNLFRSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFV 199
Cdd:TIGR02915 115 RAFHLYTLETENRRLQSALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFV 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 200 PVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVD 279
Cdd:TIGR02915 195 AINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVD 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 280 VRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVEDIALLLNELISRMEHE-KRGSIRFNSAAIMSLCRHDW 358
Cdd:TIGR02915 275 VRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARElKRKTKGFTDDALRALEAHAW 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 359 PGNVRELANLVERLAIMHPYGVIGVGELpkKFRHVDDEDEQLASSLREELEeraainaglpgmdapamlpaegldlkdyl 438
Cdd:TIGR02915 355 PGNVRELENKVKRAVIMAEGNQITAEDL--GLDARERAETPLEVNLREVRE----------------------------- 403
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1775801957 439 aNLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYGM 480
Cdd:TIGR02915 404 -RAEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHGI 444
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
67-477 |
2.19e-91 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 285.39 E-value: 2.19e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 67 VELLKQLASWDEYLPILLIGEPAPADWP-EELRRRVLASLEMPPSYNKLLDSLHRAQVYREMYDQARERGRSREpnlfRS 145
Cdd:PRK10365 65 IATLKEIKALNPAIPVLIMTAYSSVETAvEALKTGALDYLIKPLDFDNLQATLEKALAHTHSIDAETPAVTASQ----FG 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 146 LVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTG 225
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTG 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 226 AITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYY 305
Cdd:PRK10365 221 ADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 306 RLNVFPIEMAPLRERVEDIALLLNELISRMEHEKRGSIR-FNSAAIMSLCRHDWPGNVRELANLVERLAIMHPYGVIGVG 384
Cdd:PRK10365 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKgFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISER 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 385 ELPkkfrhvddedeqlasslreeleeRAAINAGLPGMDAPAMLPaegldlkdyLANLEQGLIQQALDDAGGVVARAAERL 464
Cdd:PRK10365 381 ELP-----------------------LAIASTPIPLGQSQDIQP---------LVEVEKEVILAALEKTGGNKTEAARQL 428
|
410
....*....|...
gi 1775801957 465 RIRRTTLVEKMRK 477
Cdd:PRK10365 429 GITRKTLLAKLSR 441
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
143-480 |
5.78e-91 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 291.35 E-value: 5.78e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 143 FRSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGA 222
Cdd:PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 223 FTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFRED 302
Cdd:PRK15429 455 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 534
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 303 LYYRLNVFPIEMAPLRERVEDIALLLNELISRMEHEKRGSIRFNSAAIM-SLCRHDWPGNVRELANLVERlAIMHPYGVI 381
Cdd:PRK15429 535 LYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLrTLSNMEWPGNVRELENVIER-AVLLTRGNV 613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 382 gvgelpkkfrhvddedeqlassLREELEERAAINAGLPGmdAPAMLPAEGLDlkdylanlEQGLIQQALDDAGGVVA--- 458
Cdd:PRK15429 614 ----------------------LQLSLPDITLPEPETPP--AATVVAQEGED--------EYQLIVRVLKETNGVVAgpk 661
|
330 340
....*....|....*....|..
gi 1775801957 459 RAAERLRIRRTTLVEKMRKYGM 480
Cdd:PRK15429 662 GAAQRLGLKRTTLLSRMKRLGI 683
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
146-478 |
1.47e-87 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 271.48 E-value: 1.47e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 146 LVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTG 225
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 226 AITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYY 305
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 306 RLNVFPIEMAPLRERVEDIALLLNELISRM--EHEKRGSIRFNSAAIMSLCRHDWPGNVRELANLVERLAimhpygvigv 383
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMarELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSV---------- 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 384 gelpkkFRHvDDEDEQL--------ASSLREELEERAAINAGLPGMDAPAMLP---AEGLDLKDYLANLEQGLIQQALDD 452
Cdd:TIGR02974 231 ------YRH-GLEEAPIdeiiidpfASPWRPKQAAPAVDEVNSTPTDLPSPSSiaaAFPLDLKQAQQDYEIELLQQALAE 303
|
330 340
....*....|....*....|....*.
gi 1775801957 453 AGGVVARAAERLRIRRTTLVEKMRKY 478
Cdd:TIGR02974 304 AQFNQRKAAELLGLTYHQLRGLLRKH 329
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
134-477 |
6.74e-87 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 276.36 E-value: 6.74e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 134 RGRSREPNLFRSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLES 213
Cdd:TIGR02329 202 RNQLRTRYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEA 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 214 ELFGHEKGAFTGAIT-SRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEK 292
Cdd:TIGR02329 282 ELFGYEEGAFTGARRgGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTT 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 293 MIEDGTFREDLYYRLNVFPIEMAPLRERVEDIALLLNELISRMEHEKR-----GSIRFNSAAIMSLCRHDWPGNVRELAN 367
Cdd:TIGR02329 362 AVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRlpdseAAAQVLAGVADPLQRYPWPGNVRELRN 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 368 LVERLAI---MHPYGVIgvgelpkkfrhvddEDEQLASSLREELEERaainaglpgmdAPAMLPAEGLDLKdylANLEQG 444
Cdd:TIGR02329 442 LVERLALelsAMPAGAL--------------TPDVLRALAPELAEAS-----------GKGKTSALSLRER---SRVEAL 493
|
330 340 350
....*....|....*....|....*....|...
gi 1775801957 445 LIQQALDDAGGVVARAAERLRIRRTTLVEKMRK 477
Cdd:TIGR02329 494 AVRAALERFGGDRDAAAKALGISRTTLWRRLKA 526
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
136-371 |
7.41e-87 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 275.91 E-value: 7.41e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 136 RSREPNLFRSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESEL 215
Cdd:COG3283 196 QVNDDSGFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESEL 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 216 FGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIE 295
Cdd:COG3283 276 FGYAPGAFGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQ 355
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1775801957 296 DGTFREDLYYRLNVFPIEMAPLRERVEDIALLLNELISRMEHE-KRGSIRFNSAAIMSLCRHDWPGNVRELANLVER 371
Cdd:COG3283 356 EGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQlGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYR 432
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
164-477 |
2.87e-84 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 269.67 E-value: 2.87e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 164 ADTDASVLILGESGTGKEVVARNLH--------YHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTGAITS-RAGRF 234
Cdd:PRK15424 239 ARSSAAVLIQGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGgRAGLF 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 235 ELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEM 314
Cdd:PRK15424 319 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 315 APLRERVEDIALL--------LNELISRMEHEKRGSIrfnSAAIMSLCRHDWPGNVRELANLVERLAImhpygvigvgel 386
Cdd:PRK15424 399 PPLRERVADILPLaesflkqsLAALSAPFSAALRQGL---QQCETLLLHYDWPGNVRELRNLMERLAL------------ 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 387 pkkFRHVDDEDEQLASSLREELEERAAINAGLPGMDApamlpaegldlkdylanlEQGLIQQALDDAGGVVARAAERLRI 466
Cdd:PRK15424 464 ---FLSVEPTPDLTPQFLQLLLPELARESAKTPAPRL------------------LAATLQQALERFNGDKTAAANYLGI 522
|
330
....*....|.
gi 1775801957 467 RRTTLVEKMRK 477
Cdd:PRK15424 523 SRTTLWRRLKA 533
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
164-382 |
1.43e-83 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 265.16 E-value: 1.43e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 164 ADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLF 243
Cdd:PRK15115 154 AQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 244 LDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVED 323
Cdd:PRK15115 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTED 313
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 324 IALLLNELISRMEHEKRGSIR-FNSAAIMSLCRHDWPGNVRELANLVERLAIMHPYGVIG 382
Cdd:PRK15115 314 IPLLANHLLRQAAERHKPFVRaFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVIS 373
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
169-480 |
2.83e-80 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 257.49 E-value: 2.83e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 169 SVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIG 248
Cdd:PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 249 DMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVEDIALLL 328
Cdd:PRK10923 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLA 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 329 NELISRMEHEKRGSIR-FNSAAIMSLCRHDWPGNVRELANLVERLAIMHPYGVIGVGELPKKFRHVDDEDEQ---LASSL 404
Cdd:PRK10923 323 RHFLQVAARELGVEAKlLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVPESTsqmQPDSW 402
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1775801957 405 REELEERA--AINAGLPGMdapamlpaegldLKDYLANLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYGM 480
Cdd:PRK10923 403 ATLLAQWAdrALRSGHQNL------------LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
168-480 |
1.17e-76 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 243.99 E-value: 1.17e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 168 ASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESelfghekgaftgaitsragrfelanggtlfldei 247
Cdd:COG3604 116 AAVAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES---------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 248 gdmplpmqvkllrvLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVEDIALL 327
Cdd:COG3604 162 --------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLL 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 328 LNELISRMEHE-KRGSIRFNSAAIMSLCRHDWPGNVRELANLVERLAIMHPYGVIgvgelpkkfrhvddEDEQLASSLRE 406
Cdd:COG3604 228 AEHFLEKFSRRlGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVL--------------DADDLAPGSRE 293
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1775801957 407 ELEEraainaglpgmdapamlpaegldlkdylanLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYGM 480
Cdd:COG3604 294 ALEE------------------------------VEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLGI 337
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
164-480 |
8.95e-74 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 235.72 E-value: 8.95e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 164 ADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLF 243
Cdd:PRK11608 26 APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLF 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 244 LDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVED 323
Cdd:PRK11608 106 LDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSD 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 324 IALLLNELISRMEHEKRGSI--RFNSAAIMSLCRHDWPGNVRELANLVERlaimhpygvigvgelpKKFRHVDDEDEqLA 401
Cdd:PRK11608 186 IMLMAEHFAIQMCRELGLPLfpGFTERARETLLNYRWPGNIRELKNVVER----------------SVYRHGTSEYP-LD 248
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1775801957 402 SSLREELEERAAINAglPGMDAPAMLPAEGLDLKDYLANLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYGM 480
Cdd:PRK11608 249 NIIIDPFKRRPAEEA--IAVSETTSLPTLPLDLREWQHQQEKELLQRSLQQAKFNQKRAAELLGLTYHQLRALLKKHQI 325
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
167-371 |
6.12e-68 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 226.49 E-value: 6.12e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 167 DASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDE 246
Cdd:PRK10820 227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDE 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 247 IGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVEDIAL 326
Cdd:PRK10820 307 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMP 386
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1775801957 327 LLNELISRMEHEKrGSIRFNSAAIMS--LCRHDWPGNVRELANLVER 371
Cdd:PRK10820 387 LTELFVARFADEQ-GVPRPKLAADLNtvLTRYGWPGNVRQLKNAIYR 432
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
143-480 |
3.42e-63 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 216.85 E-value: 3.42e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 143 FRSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGhekGA 222
Cdd:PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SD 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 223 FTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFRED 302
Cdd:PRK11388 401 RTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQ 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 303 LYYRLNVFPIEMAPLRERVEDIALLLNELISRMEHEKRGSIRFNSAAIMSLCRHDWPGNVRELANLVERLAIMHPYGVIG 382
Cdd:PRK11388 481 LYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRIR 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 383 VGELPKKFRH----VDDEDEQLASSLR-EELEERAAINAglpgmdapamlpaegldlkdylANLEQGLIQQalddaggvv 457
Cdd:PRK11388 561 LSDLPEHLFTeqatDDVSATRLSTSLSlAELEKEAIINA----------------------AQVCGGRIQE--------- 609
|
330 340
....*....|....*....|...
gi 1775801957 458 arAAERLRIRRTTLVEKMRKYGM 480
Cdd:PRK11388 610 --MAALLGIGRTTLWRKMKQHGI 630
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
168-437 |
1.89e-45 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 166.55 E-value: 1.89e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 168 ASVLILGESGTGKEVVARNLHYHSKRR---EGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFL 244
Cdd:COG4650 209 APILLTGPTGAGKSQLARRIYELKKARhqvSGRFVEVNCATLRGDGAMSALFGHVKGAFTGAVSDRAGLLRSADGGVLFL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 245 DEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVEDI 324
Cdd:COG4650 289 DEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLPGLAERREDI 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 325 ALLLNELISRMEHEKRGSIRFNSAAimslcRHD-----------WPGNVRELANLVERLAIMHPYGVIGVGelpkkfrHV 393
Cdd:COG4650 369 EPNLDYELARFAREQGRRVRFNKEA-----RARylafatspealWSGNFRDLNASVTRMATLAEGGRITVA-------LV 436
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1775801957 394 DDEDEQLASSLREELEERAAInaglpgmDAPAMLPAEGLDLKDY 437
Cdd:COG4650 437 DEEIARLRRLWQRAEAATGDD-------LLAELLGAEQAAELDL 473
|
|
| FleQ |
pfam06490 |
Flagellar regulatory protein FleQ; This domain is found at the N terminus of a subset of ... |
6-123 |
5.98e-35 |
|
Flagellar regulatory protein FleQ; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Pssm-ID: 428975 [Multi-domain] Cd Length: 108 Bit Score: 126.15 E-value: 5.98e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 6 KLLLIDDNLDRSRDLAVILNFLGEDQLTCNSEDWreVAAGLSNSREALCVLLGSVESKggavELLKQLASWDEYLPILLI 85
Cdd:pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAISSEDL--SAALWSSRWEALAVILGSVSAA----ELLKALAKWDPHLPVLLL 74
|
90 100 110
....*....|....*....|....*....|....*....
gi 1775801957 86 GE-PAPADWPEelrrrVLASLEMPPSYNKLLDSLHRAQV 123
Cdd:pfam06490 75 GEtDDALELAN-----VIGTLEEPLNYPQLTDLLHRCQV 108
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
170-369 |
5.73e-28 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 117.90 E-value: 5.73e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 170 VLILGESGTGKEVVARNLH-Y--HSKR--REGPFVPVNCgaipA------ELLESELFGHEKGAFTGAITSRAGRFELAN 238
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYeYaiEIGVlpEDAPFVVFNC----AdyannpQLLMSQLFGYVKGAFTGADKDKEGLIEKAD 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 239 GGTLFLDEIGDMPLPMQVKLLRVLQERTFERVG-SNKTQNVDVRIIAATHKNLEKmiedgTFredlyyrLNVF------- 310
Cdd:COG1221 209 GGILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGeTEKTRKANVRIIFATTEDPES-----SL-------LKTFlrripmv 276
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1775801957 311 ----PIEMAPLRERVEDIALLLNELISRMEHekrgSIRFNSAAIMSLCRHDWPGNVRELANLV 369
Cdd:COG1221 277 iklpSLEERSLEERLELIKHFFKEEAKRLNK----PIKVSKEVLKALLLYDCPGNIGQLKSDI 335
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
165-308 |
4.90e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 94.91 E-value: 4.90e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 165 DTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEkgaftgAITSRAGRFELANGGTLFL 244
Cdd:cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLLFELAEKAKPGVLFI 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1775801957 245 DEIGDMPLPMQVKLLRVLQERTFERVgsnktQNVDVRIIAATHKNlekmiEDGTFREDLYYRLN 308
Cdd:cd00009 91 DEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRP-----LLGDLDRALYDRLD 144
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
147-317 |
1.01e-16 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 76.61 E-value: 1.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 147 VGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESelfghekgaftga 226
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 227 itsragrfelANGGTLFLDEIGDMPlpmqvkllRVLQERTFERVGSNKTQNvdVRIIAATHKNLEKMIEDGTFREDLYYR 306
Cdd:pfam14532 68 ----------AKGGTLYLKDIADLS--------KALQKGLLLLLAKAEGYR--VRLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 1775801957 307 LNVFPIEMAPL 317
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
169-307 |
7.82e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.16 E-value: 7.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 169 SVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLE--SELFGHEKGAFTGAITSRAGRFELA---NGGTLF 243
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqlLLIIVGGKKASGSGELRLRLALALArklKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1775801957 244 LDEIGDMPLPMQVKLLRVLQErtfERVGSNKTQNVDVRIIAATH--KNLEKMIEDGTFREDLYYRL 307
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
438-477 |
1.02e-08 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 50.85 E-value: 1.02e-08
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1775801957 438 LANLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRK 477
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
169-287 |
1.88e-05 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 44.21 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1775801957 169 SVLILGESGTGKEVVARnlHYHSKRREGPFVPVNCgaiPAELLESELFGH-----EKGAFTGAITSRAGRfelaNGGTLF 243
Cdd:pfam07728 1 GVLLVGPPGTGKTELAE--RLAAALSNRPVFYVQL---TRDTTEEDLFGRrnidpGGASWVDGPLVRAAR----EGEIAV 71
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1775801957 244 LDEIGDMPLPMQVKLLRVLQERTF---ERVGSNKTQNVDVRIIAATH 287
Cdd:pfam07728 72 LDEINRANPDVLNSLLSLLDERRLllpDGGELVKAAPDGFRLIATMN 118
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
438-480 |
3.67e-04 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 39.41 E-value: 3.67e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1775801957 438 LANLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYGM 480
Cdd:COG2901 40 LAEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYGL 82
|
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