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Conserved domains on  [gi|2753920154|dbj|GAB0344606|]
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phage head-tail connector protein [Staphylococcus pseudintermedius]

Protein Classification

phage head-tail connector protein( domain architecture ID 10524055)

phage gp6-like head-tail connector protein similar to Escherichia phage T5 head completion protein; the gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_connect_1 pfam05135
Phage gp6-like head-tail connector protein; This family of proteins contain head-tail ...
 5-89 1.77e-15

Phage gp6-like head-tail connector protein; This family of proteins contain head-tail connector proteins related to gp6 from bacteriophage HK97. A structure of this protein shows similarity to gp15 a well characterized connector component of bacteriophage SPP1.


:

Pssm-ID: 428326  Cd Length: 93  Bit Score: 65.89  E-value: 1.77e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753920154   5 LDKVKKRIGIEDHLQDKLLCEIITNVVDELKLRLPK-----EQAFIPQPLYFIVIEVAVKRYNKVGSEGMVSESVEGRSM 79
Cdd:pfam05135   4 LEDIKTLLGIDDDSDDALLNSYIDAAEEYIENYLGRslgdpDAISLPADLKYAVLELAVARYNNRGNEGMSSYSEEGVSL 83

                          90
                  ....*....|
gi 2753920154  80 SYEEDDFKQY 89
Cdd:pfam05135  84 SFEDNDPDGV 93
 
Name Accession Description Interval E-value
Phage_connect_1 pfam05135
Phage gp6-like head-tail connector protein; This family of proteins contain head-tail ...
 5-89 1.77e-15

Phage gp6-like head-tail connector protein; This family of proteins contain head-tail connector proteins related to gp6 from bacteriophage HK97. A structure of this protein shows similarity to gp15 a well characterized connector component of bacteriophage SPP1.


Pssm-ID: 428326  Cd Length: 93  Bit Score: 65.89  E-value: 1.77e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753920154   5 LDKVKKRIGIEDHLQDKLLCEIITNVVDELKLRLPK-----EQAFIPQPLYFIVIEVAVKRYNKVGSEGMVSESVEGRSM 79
Cdd:pfam05135   4 LEDIKTLLGIDDDSDDALLNSYIDAAEEYIENYLGRslgdpDAISLPADLKYAVLELAVARYNNRGNEGMSSYSEEGVSL 83

                          90
                  ....*....|
gi 2753920154  80 SYEEDDFKQY 89
Cdd:pfam05135  84 SFEDNDPDGV 93
 
Name Accession Description Interval E-value
Phage_connect_1 pfam05135
Phage gp6-like head-tail connector protein; This family of proteins contain head-tail ...
 5-89 1.77e-15

Phage gp6-like head-tail connector protein; This family of proteins contain head-tail connector proteins related to gp6 from bacteriophage HK97. A structure of this protein shows similarity to gp15 a well characterized connector component of bacteriophage SPP1.


Pssm-ID: 428326  Cd Length: 93  Bit Score: 65.89  E-value: 1.77e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753920154   5 LDKVKKRIGIEDHLQDKLLCEIITNVVDELKLRLPK-----EQAFIPQPLYFIVIEVAVKRYNKVGSEGMVSESVEGRSM 79
Cdd:pfam05135   4 LEDIKTLLGIDDDSDDALLNSYIDAAEEYIENYLGRslgdpDAISLPADLKYAVLELAVARYNNRGNEGMSSYSEEGVSL 83

                          90
                  ....*....|
gi 2753920154  80 SYEEDDFKQY 89
Cdd:pfam05135  84 SFEDNDPDGV 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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